Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002078

Physical Location & Seq

Genomic Coordinates Forward (+)

5225391 .. 5227127

Gene Structure 1737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCGAGTAGAGTAGACCACGAATACGACTACCTGTTCAAGATCGTGTTGATCGGTGACTCTGGTGTGGGCAAATCTAACATTCTCTCTAGATTTACCAGGAATGAGTTCTGCTTGGAGTCCAAATCCACTATCGGAGTCGAGTTCGCCACCCGAACTCTCCAGGTTGAGGGAAAGACTGTGAAGGCACAGATCTGGGATACAGCAGGTCAGGAGCGATACCGTGCTATCACCAGTGCTTACTATAGAGGGGCAGTGGGTGCTTTCCTTGTCTACGACATAACTAAGCGACCAACTTTTGAGAATGTCCAAAGGTGGCTCCGTGAGTTGAGGGACCATGCAGATTCGAACATTGTTATCATGATGACAGGAAACAAGTCTGACTTGAACCATCTCAGAGCTGTTTCAGAGGACGATGGTCAGTCGTTGGCTGAGAGGGAAGGTCTCTCATTTCTCGAGACATCTGCACTGGAAGCAACCAACATTGAGAAAGCATTTCAAACTATTCTAACCGAGATCTACCATATCGTCAGCAAAAAAGCACTGGCAGCCCAAGAAACAGTCTCAACTACCCTACCTGGTCAAGGAACCACCATCAACGTTGGTGATGCTTCTGGGAATACGAAGAGAGGTTGCTGCTCGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009504 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0030054 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

23.83

Weight (kDa)

6.12

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 166	4.7e-13	ADP-ribosylation factor family
Ras	PF00071	14 - 174	3.7e-62	Ras family
Roc	PF08477	14 - 128	4.7e-34	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07410 AT3G46830 AT3G46830 AT5G59150 AT5G59150
fragaria_vesca	FvH4_3g37150 FvH4_7g23580 FvH4_7g23580
malus_domestica	MD01G1141600.v1.1 MD03G1084700.v1.1 MD07G1205800.v1.1 MD11G1092300.v1.1
prunus_persica	Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.6G068000_v2.0.a1
pyrus_communis	pycom01g16190 pycom03g06690 pycom07g19270
rosa_chinensis	RchiOBHm_Chr1g0368751 RchiOBHm_Chr5g0042031 RchiOBHm_Chr5g0066871
rosa_laevigata	RLG00000027191 RLG00000035884
rosa_multiflora	Rmu_co8341881.1_g000001 Rmu_sc0000605.1_g000057 Rmu_sc0001791.1_g000018 Rmu_sc0005860.1_g000001 Rmu_sc0042332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014250 Rroxscaffold_4G00288300
rosa_rugosa	Rorug01G0344800 Rorug05G0379000 Rorug05G0379000 Rorug05G0379100
rosa_samantha	Rh1AG351800 Rh1BG315500 Rh1CG330200 Rh1DG347000 Rh5AG438800 Rh5BG455700 Rh5CG477800 Rh5DG470500
rosa_wichuraiana	Rw5G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
AccI	GTMKAC	2 cut(s)	15, 273
AclI	AACGTT	1 cut(s)	600
AfiI	CCNNNNNNNGG	2 cut(s)	169, 584
AgsI	TTSAA	3 cut(s)	40, 388, 500
AjnI	CCWGG	3 cut(s)	98, 162, 577
AluBI	AGCT	1 cut(s)	401
AluI	AGCT	1 cut(s)	401
Alw26I	GTCTC	3 cut(s)	449, 452, 568
Ama87I	CYCGRG	1 cut(s)	455
ApeKI	GCWGC	2 cut(s)	548, 636
Asp700I	GAANNNNTTC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	334
AsuHPI	GGTGA	3 cut(s)	68, 223, 617
AsuII	TTCGAA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	560, 623
BccI	CCATC	3 cut(s)	399, 410, 602
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciT130I	CCWGG	3 cut(s)	100, 164, 579
BciVI	GTATCC	1 cut(s)	193
BcoDI	GTCTC	3 cut(s)	449, 452, 568
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	193
BglII	AGATCT	2 cut(s)	192, 516
BisI	GCNGC	2 cut(s)	549, 637
BlsI	GCNGC	2 cut(s)	550, 638
Bme1390I	CCNGG	3 cut(s)	100, 164, 579
Bme18I	GGWCC	1 cut(s)	334
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	3 cut(s)	320, 335, 589
BmrFI	CCNGG	3 cut(s)	100, 164, 579
BmsI	GCATC	1 cut(s)	598
BoxI	GACNNNNGTC	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	347
BsaI	GGTCTC	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 584
Bse1I	ACTGG	3 cut(s)	234, 474, 549
BseBI	CCWGG	3 cut(s)	100, 164, 579
BseLI	CCNNNNNNNGG	2 cut(s)	169, 584
BseMII	CTCAG	2 cut(s)	409, 423
BseNI	ACTGG	3 cut(s)	234, 474, 549
BseXI	GCAGC	2 cut(s)	560, 623
BsgI	GTGCAG	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	169, 584
BsmAI	GTCTC	3 cut(s)	449, 452, 568
BsmFI	GGGAC	1 cut(s)	347
Bso31I	GGTCTC	1 cut(s)	449
BsoBI	CYCGRG	1 cut(s)	455
Bsp119I	TTCGAA	1 cut(s)	347
Bsp143I	GATC	4 cut(s)	42, 51, 192, 516
BspCNI	CTCAG	2 cut(s)	408, 424
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	3 cut(s)	320, 335, 589
BspMI	ACCTGC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	449
BsrI	ACTGG	3 cut(s)	234, 474, 549
BssMI	GATC	4 cut(s)	42, 51, 192, 516
Bst2UI	CCWGG	3 cut(s)	100, 164, 579
Bst4CI	ACNGT	3 cut(s)	181, 224, 562
Bst6I	CTCTTC	1 cut(s)	620
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstBI	TTCGAA	1 cut(s)	347
BstDEI	CTNAG	3 cut(s)	285, 395, 432
BstENI	CCTNNNNNAGG	1 cut(s)	582
BstKTI	GATC	4 cut(s)	45, 54, 195, 519
BstMAI	GTCTC	3 cut(s)	449, 452, 568
BstMBI	GATC	4 cut(s)	42, 51, 192, 516
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 473, 548
BstNI	CCWGG	3 cut(s)	100, 164, 579
BstPAI	GACNNNNGTC	1 cut(s)	417
BstSCI	CCNGG	3 cut(s)	98, 162, 577
BstSFI	CTRYAG	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	560, 623
BstX2I	RGATCY	2 cut(s)	192, 516
BstYI	RGATCY	2 cut(s)	192, 516
BsuI	GTATCC	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	4 cut(s)	241, 261, 467, 542
BveI	ACCTGC	1 cut(s)	197
CciI	TCATGA	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	334
CsiI	ACCWGGT	1 cut(s)	577
CviAII	CATG	2 cut(s)	338, 361
CviJI	RGCY	4 cut(s)	319, 401, 431, 551
CviKI_1	RGCY	4 cut(s)	319, 401, 431, 551
DdeI	CTNAG	3 cut(s)	285, 395, 432
DpnI	GATC	4 cut(s)	44, 53, 194, 518
DpnII	GATC	4 cut(s)	42, 51, 192, 516
Eam1104I	CTCTTC	1 cut(s)	620
EarI	CTCTTC	1 cut(s)	620
Eco31I	GGTCTC	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	455
EcoNI	CCTNNNNNAGG	1 cut(s)	582
EcoRII	CCWGG	3 cut(s)	98, 162, 577
FaeI	CATG	2 cut(s)	341, 364
FaiI	YATR	6 cut(s)	246, 281, 339, 362, 525, 646
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	2 cut(s)	337, 360
FblI	GTMKAC	2 cut(s)	15, 273
Fnu4HI	GCNGC	2 cut(s)	549, 637
Fsp4HI	GCNGC	2 cut(s)	549, 637
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	2 cut(s)	549, 637
GsuI	CTGGAG	1 cut(s)	146
Hin1II	CATG	2 cut(s)	341, 364
HinfI	GANTC	4 cut(s)	59, 119, 138, 344
HphI	GGTGA	3 cut(s)	68, 223, 617
Hpy166II	GTNNAC	2 cut(s)	16, 274
Hpy188I	TCNGA	4 cut(s)	137, 382, 398, 409
Hpy188III	TCNNGA	6 cut(s)	40, 90, 212, 361, 455, 457
Hpy8I	GTNNAC	2 cut(s)	16, 274
HpyAV	CCTTC	2 cut(s)	178, 434
HpyCH4III	ACNGT	3 cut(s)	181, 224, 562
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	2 cut(s)	341, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 473, 548
HpyF3I	CTNAG	3 cut(s)	285, 395, 432
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	2 cut(s)	341, 364
Kzo9I	GATC	4 cut(s)	42, 51, 192, 516
LmnI	GCTCC	2 cut(s)	214, 324
Lsp1109I	GCAGC	2 cut(s)	560, 623
LweI	GCATC	1 cut(s)	598
MabI	ACCWGGT	1 cut(s)	577
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	4 cut(s)	44, 53, 194, 518
MboI	GATC	4 cut(s)	42, 51, 192, 516
MboII	GAAGA	1 cut(s)	637
MflI	RGATCY	2 cut(s)	192, 516
MlyI	GAGTC	3 cut(s)	53, 128, 147
MnlI	CCTC	6 cut(s)	163, 242, 324, 403, 429, 623
MroXI	GAANNNNTTC	1 cut(s)	107
MspR9I	CCNGG	3 cut(s)	100, 164, 579
MvaI	CCWGG	3 cut(s)	100, 164, 579
MwoI	GCNNNNNNNGC	3 cut(s)	260, 473, 548
NdeII	GATC	4 cut(s)	42, 51, 192, 516
NlaIII	CATG	2 cut(s)	341, 364
NlaIV	GGNNCC	3 cut(s)	320, 335, 589
NmuCI	GTSAC	1 cut(s)	56
NspV	TTCGAA	1 cut(s)	347
PaeR7I	CTCGAG	1 cut(s)	455
PagI	TCATGA	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	2 cut(s)	550, 638
PleI	GAGTC	3 cut(s)	53, 127, 146
PpsI	GAGTC	3 cut(s)	53, 127, 146
PshAI	GACNNNNGTC	1 cut(s)	417
Psp1406I	AACGTT	1 cut(s)	600
Psp6I	CCWGG	3 cut(s)	98, 162, 577
PspGI	CCWGG	3 cut(s)	98, 162, 577
PspN4I	GGNNCC	3 cut(s)	320, 335, 589
PspPI	GGNCC	1 cut(s)	334
PsuI	RGATCY	2 cut(s)	192, 516
SatI	GCNGC	2 cut(s)	549, 637
Sau3AI	GATC	4 cut(s)	42, 51, 192, 516
Sau96I	GGNCC	1 cut(s)	334
SchI	GAGTC	3 cut(s)	53, 128, 147
ScrFI	CCNGG	3 cut(s)	100, 164, 579
SetI	ASST	9 cut(s)	36, 168, 211, 317, 403, 445, 580, 603, 634
SexAI	ACCWGGT	1 cut(s)	577
SfaNI	GCATC	1 cut(s)	598
SfcI	CTRYAG	1 cut(s)	244
Sfr274I	CTCGAG	1 cut(s)	455
SfuI	TTCGAA	1 cut(s)	347
SinI	GGWCC	1 cut(s)	334
SlaI	CTCGAG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	3 cut(s)	98, 162, 577
TaaI	ACNGT	3 cut(s)	181, 224, 562
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	4 cut(s)	141, 347, 456, 641
TfiI	GAWTC	1 cut(s)	344
TscAI	CASTG	4 cut(s)	241, 261, 474, 549
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	2 cut(s)	548, 636
Tsp45I	GTSAC	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	4 cut(s)	241, 261, 474, 549
VpaK11BI	GGWCC	1 cut(s)	334
XagI	CCTNNNNNAGG	1 cut(s)	582
XbaI	TCTAGA	1 cut(s)	89
XhoI	CTCGAG	1 cut(s)	455
XmiI	GTMKAC	2 cut(s)	15, 273
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.