RchiOBHm_Chr5g0042031

Rab subfamily of small GTPases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002078
Physical Location & Seq
Forward (+)
36911466 .. 36911756
291 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32045

Sequence Viewer

Length: 291 bp
ATGATGGCTGGAAATAAGTCTGACTTGAACCATCTTAGAGCTGTTTCAGAGGATGATGGTCAGGCCTTGGCTGAGAGGGAAGGTCTCTCATTTCTTGAGACATCAGCACTCGAAGCAACCAATATTGAGAAGGCATTTCAAACTATTTTAACAGAGATCTACCATATCATTAGCAAAAAGGCACTGGCAGCTCAGGAAGCAGTCGCGAGCACTACCCTTTCTAGTCAAGGAACTACTATCAATGTTGGTGATGCTTCTGGGAATACGAAAAGAGGTTGCTGCTCTACATAA

Protein Analysis

96

Amino Acids

10.1

Weight (kDa)

5.0

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 1 - 54 4.2e-13 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 206
AgsI TTSAA 2 cut(s) 28, 140
AluBI AGCT 2 cut(s) 41, 191
AluI AGCT 2 cut(s) 41, 191
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 2 cut(s) 89, 92
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 2 cut(s) 188, 279
AsuHPI GGTGA 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 2 cut(s) 200, 266
BccI CCATC 2 cut(s) 39, 50
BcoDI GTCTC 2 cut(s) 89, 92
BfaI CTAG 1 cut(s) 222
BglII AGATCT 1 cut(s) 156
BisI GCNGC 2 cut(s) 189, 280
BlsI GCNGC 2 cut(s) 190, 281
BmsI GCATC 1 cut(s) 241
Bpu10I CCTNAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 63, 206
BseNI ACTGG 1 cut(s) 189
BseXI GCAGC 2 cut(s) 200, 266
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 212
BsmAI GTCTC 2 cut(s) 89, 92
BsnI GGCC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 1 cut(s) 156
Bsp68I TCGCGA 1 cut(s) 206
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 2 cut(s) 64, 205
BspFNI CGCG 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 89
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 3 cut(s) 35, 72, 192
BstF5I GGATG 1 cut(s) 58
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 1 cut(s) 159
BstMAI GTCTC 2 cut(s) 89, 92
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 3 cut(s) 113, 188, 197
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 2 cut(s) 200, 266
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 182
BtuMI TCGCGA 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 208
CviJI RGCY 5 cut(s) 8, 41, 65, 71, 191
CviKI_1 RGCY 5 cut(s) 8, 41, 65, 71, 191
DdeI CTNAG 3 cut(s) 35, 72, 192
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 66
Eco147I AGGCCT 1 cut(s) 65
Eco31I GGTCTC 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaiI YATR 2 cut(s) 165, 289
FalI AAGNNNNNCTT 2 cut(s) 8, 40
Fnu4HI GCNGC 2 cut(s) 189, 280
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 189, 280
FspBI CTAG 1 cut(s) 222
GluI GCNGC 2 cut(s) 189, 280
HaeIII GGCC 1 cut(s) 65
HphI GGTGA 1 cut(s) 260
Hpy188I TCNGA 2 cut(s) 22, 49
Hpy188III TCNNGA 3 cut(s) 95, 194, 205
HpyAV CCTTC 2 cut(s) 74, 124
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 188, 197
HpyF3I CTNAG 3 cut(s) 35, 72, 192
Kzo9I GATC 1 cut(s) 156
LpnPI CCDG 4 cut(s) 47, 170, 179, 243
Lsp1109I GCAGC 2 cut(s) 200, 266
LweI GCATC 1 cut(s) 241
MaeI CTAG 1 cut(s) 222
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 212
MnlI CCTC 3 cut(s) 43, 69, 266
MseI TTAA 1 cut(s) 149
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 3 cut(s) 113, 188, 197
NdeII GATC 1 cut(s) 156
NruI TCGCGA 1 cut(s) 206
PceI AGGCCT 1 cut(s) 65
PkrI GCNGC 2 cut(s) 190, 281
PsuI RGATCY 1 cut(s) 156
RruI TCGCGA 1 cut(s) 206
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 2 cut(s) 189, 280
Sau3AI GATC 1 cut(s) 156
SduI GDGCHC 1 cut(s) 212
SetI ASST 4 cut(s) 43, 85, 193, 277
SfaNI GCATC 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SseBI AGGCCT 1 cut(s) 65
SspI AATATT 1 cut(s) 124
SspMI CTAG 1 cut(s) 222
StuI AGGCCT 1 cut(s) 65
StyI CCWWGG 1 cut(s) 66
TaqI TCGA 1 cut(s) 111
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 1 cut(s) 189
TseI GCWGC 2 cut(s) 188, 279
TspRI CASTG 1 cut(s) 189
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.