Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002078

Physical Location & Seq

Genomic Coordinates Reverse (-)

26092348 .. 26094731

Gene Structure 2384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G241900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCGTACAAAGTAGATCACGAATATGATTACCTCTTCAAGATTGTATTGATTGGAGATTCGGGCGTTGGAAAATCGAACATTCTTTCGAGATTTACGCGGAATGAGTTTTGTTTGGAGTCTAAGTCCACCATTGGAGTTGAATTTGCAACTAGGACATTGCAGGTAGAGGGGAAGACAGTGAAAGCACAAATATGGGACACAGCAGGTCAAGAAAGGTACCGAGCCATAACCAGTGCTTACTACCGAGGGGCTGTTGGTGCACTATTGGTCTATGACATAACCAAACGGCAAACATTTGACAATGTGCTGAGGTGGCTCCGTGAACTGAGAGACCATGCAGACTCTAACATTGTCATAATGATGGCCGGTAACAAATCTGACTTGAATCACCTGAGGGCAGTCCCAGGAGAAGATGCTCAACTGTTGGCTGAGAAGGAAGGCCTCTCTTTCCTTGAAACCTCAGCATTGGAAGCCTTCAATGTTGAGAATGCATTTCAAACCATTTTGTTGGATATCTACCACATAATAAGTAAGAAGGCACTAGCAGCACAGGAGGCAGTTTCCGCTACTGGACTTCCTCATGGCACTACCATCAATGTTGCAAATCTATCCGGTGACGTGAATAAGAGAAATTGTTGCTCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

217

Amino Acids

23.99

Weight (kDa)

6.22

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07410 AT3G46830 AT3G46830 AT5G59150 AT5G59150
fragaria_vesca	FvH4_3g37150 FvH4_7g23580 FvH4_7g23580
malus_domestica	MD01G1141600.v1.1 MD03G1084700.v1.1 MD07G1205800.v1.1 MD11G1092300.v1.1
prunus_persica	Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.6G068000_v2.0.a1
pyrus_communis	pycom01g16190 pycom03g06690 pycom07g19270
rosa_chinensis	RchiOBHm_Chr1g0368751 RchiOBHm_Chr5g0042031 RchiOBHm_Chr5g0066871
rosa_laevigata	RLG00000027191 RLG00000035884
rosa_multiflora	Rmu_co8341881.1_g000001 Rmu_sc0000605.1_g000057 Rmu_sc0001791.1_g000018 Rmu_sc0005860.1_g000001 Rmu_sc0042332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014250 Rroxscaffold_4G00288300
rosa_rugosa	Rorug01G0344800 Rorug05G0379000 Rorug05G0379000 Rorug05G0379100
rosa_samantha	Rh1AG351800 Rh1BG315500 Rh1CG330200 Rh1DG347000 Rh5AG438800 Rh5BG455700 Rh5CG477800 Rh5DG470500
rosa_wichuraiana	Rw5G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	154, 197
Acc65I	GGTACC	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	219
AccII	CGCG	1 cut(s)	100
AciI	CCGC	2 cut(s)	100, 567
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	2 cut(s)	8, 221
AgsI	TTSAA	6 cut(s)	40, 143, 388, 458, 481, 500
AjiI	CACGTC	1 cut(s)	622
AjnI	CCWGG	1 cut(s)	406
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	327
Alw44I	GTGCAC	1 cut(s)	261
AoxI	GGCC	2 cut(s)	366, 442
ApaLI	GTGCAC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	1 cut(s)	143
Asp718I	GGTACC	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	383, 629
AxyI	CCTNAGG	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	265
BbvCI	CCTCAGC	2 cut(s)	311, 463
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	2 cut(s)	358, 602
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	2 cut(s)	153, 545
BfuAI	ACCTGC	2 cut(s)	154, 197
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
Bme1390I	CCNGG	1 cut(s)	408
BmgBI	CACGTC	1 cut(s)	622
BmiI	GGNNCC	2 cut(s)	221, 320
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	1 cut(s)	406
BpiI	GAAGAC	1 cut(s)	182
Bpu10I	CCTNAGC	2 cut(s)	311, 463
BsaI	GGTCTC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	247, 406
BsaWI	WCCGGW	1 cut(s)	614
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	2 cut(s)	234, 577
Bse21I	CCTNAGG	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	247, 406
BseMI	GCAATG	1 cut(s)	158
BseMII	CTCAG	5 cut(s)	302, 320, 386, 423, 477
BseNI	ACTGG	2 cut(s)	234, 577
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	560
Bsh1236I	CGCG	1 cut(s)	100
BshFI	GGCC	2 cut(s)	368, 444
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	369, 615
BslFI	GGGAC	2 cut(s)	212, 389
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	2 cut(s)	212, 389
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	368, 444
Bso31I	GGTCTC	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	16
BspACI	CCGC	2 cut(s)	100, 567
BspANI	GGCC	2 cut(s)	368, 444
BspCNI	CTCAG	5 cut(s)	303, 321, 387, 424, 476
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	221, 320
BspMI	ACCTGC	2 cut(s)	154, 197
BspT107I	GGYRCC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	368
BsrI	ACTGG	2 cut(s)	234, 577
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	2 cut(s)	247, 406
BssMI	GATC	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	2 cut(s)	181, 426
Bst6I	CTCTTC	1 cut(s)	41
BstDEI	CTNAG	6 cut(s)	123, 311, 329, 395, 432, 463
BstFNI	CGCG	1 cut(s)	100
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	6 cut(s)	260, 316, 473, 548, 557, 566
BstNI	CCWGG	1 cut(s)	408
BstSCI	CCNGG	1 cut(s)	406
BstSLI	GKGCMC	1 cut(s)	265
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	560
BstV2I	GAAGAC	1 cut(s)	182
BstXI	CCANNNNNNTGG	1 cut(s)	511
Bsu36I	CCTNAGG	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	368, 444
BtrI	CACGTC	1 cut(s)	622
BtsIMutI	CAGTG	2 cut(s)	186, 241
BveI	ACCTGC	2 cut(s)	154, 197
Cfr10I	RCCGGY	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	7, 220
CviAII	CATG	2 cut(s)	338, 584
CviJI	RGCY	7 cut(s)	227, 254, 319, 368, 431, 444, 476
CviKI_1	RGCY	7 cut(s)	227, 254, 319, 368, 431, 444, 476
CviQI	GTAC	2 cut(s)	7, 220
DdeI	CTNAG	6 cut(s)	123, 311, 329, 395, 432, 463
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	444
Eco31I	GGTCTC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	517
Eco81I	CCTNAGG	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	517
EcoT22I	ATGCAT	1 cut(s)	496
FaeI	CATG	2 cut(s)	341, 587
FaiI	YATR	9 cut(s)	27, 196, 230, 276, 281, 339, 359, 527, 585
FaqI	GGGAC	2 cut(s)	212, 389
FatI	CATG	2 cut(s)	337, 583
Fnu4HI	GCNGC	1 cut(s)	549
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	2 cut(s)	153, 545
GluI	GCNGC	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	368, 444
HapII	CCGG	2 cut(s)	369, 615
Hin1II	CATG	2 cut(s)	341, 587
HinfI	GANTC	4 cut(s)	59, 119, 344, 388
HpaII	CCGG	2 cut(s)	369, 615
HphI	GGTGA	2 cut(s)	383, 629
Hpy166II	GTNNAC	3 cut(s)	129, 263, 326
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	4 cut(s)	20, 40, 90, 212
Hpy8I	GTNNAC	3 cut(s)	129, 263, 326
HpyAV	CCTTC	4 cut(s)	430, 434, 487, 532
HpyCH4III	ACNGT	2 cut(s)	181, 426
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	6 cut(s)	149, 163, 263, 341, 494, 605
HpyF10VI	GCNNNNNNNGC	6 cut(s)	260, 316, 473, 548, 557, 566
HpyF3I	CTNAG	6 cut(s)	123, 311, 329, 395, 432, 463
HpySE526I	ACGT	1 cut(s)	621
Hsp92II	CATG	2 cut(s)	341, 587
KpnI	GGTACC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	324
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	2 cut(s)	153, 545
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	2 cut(s)	371, 617
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	3 cut(s)	28, 187, 425
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	2 cut(s)	143, 634
MlyI	GAGTC	2 cut(s)	128, 338
MmeI	TCCRAC	2 cut(s)	49, 492
MnlI	CCTC	9 cut(s)	44, 163, 242, 306, 390, 455, 472, 550, 591
Mph1103I	ATGCAT	1 cut(s)	496
MslI	CAYNNNNRTG	3 cut(s)	24, 193, 362
MspI	CCGG	2 cut(s)	369, 615
MspR9I	CCNGG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	6 cut(s)	260, 316, 473, 548, 557, 566
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	2 cut(s)	341, 587
NlaIV	GGNNCC	2 cut(s)	221, 320
NmuCI	GTSAC	1 cut(s)	617
NsiI	ATGCAT	1 cut(s)	496
PceI	AGGCCT	1 cut(s)	444
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	59, 388
PkrI	GCNGC	1 cut(s)	550
PleI	GAGTC	2 cut(s)	127, 338
PpsI	GAGTC	2 cut(s)	127, 338
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	2 cut(s)	221, 320
RsaI	GTAC	2 cut(s)	8, 221
RsaNI	GTAC	2 cut(s)	7, 220
RseI	CAYNNNNRTG	3 cut(s)	24, 193, 362
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	1 cut(s)	16
SchI	GAGTC	2 cut(s)	128, 338
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	8 cut(s)	36, 168, 211, 221, 317, 396, 464, 624
SfaNI	GCATC	1 cut(s)	406
SmiMI	CAYNNNNRTG	3 cut(s)	24, 193, 362
Sse9I	AATT	2 cut(s)	143, 634
SseBI	AGGCCT	1 cut(s)	444
SsiI	CCGC	2 cut(s)	100, 567
SspMI	CTAG	2 cut(s)	153, 545
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	406
TaaI	ACNGT	2 cut(s)	181, 426
TaiI	ACGT	1 cut(s)	624
TaqI	TCGA	2 cut(s)	77, 89
TasI	AATT	2 cut(s)	143, 634
TfiI	GAWTC	2 cut(s)	59, 388
TscAI	CASTG	2 cut(s)	186, 241
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	617
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	2 cut(s)	186, 241
VneI	GTGCAC	1 cut(s)	261
XapI	RAATTY	1 cut(s)	143
XspI	CTAG	2 cut(s)	153, 545
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.