Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002078

Physical Location & Seq

Genomic Coordinates Reverse (-)

25072323 .. 25074281

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1141600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCGTATAAGGTGGATCACGAATATGATTACCTCTTCAAGATTGTATTGATTGGAGATTCGGGTGTCGGAAAATCGAACATTCTTTCGAGGTTTACGAGGAATGAGTTTTGTTTGGAGTCTAAGTCCACCATTGGAGTTGAATTTGCAACTAGGACATTGCAGGTAGAGGGGAAGACAGTGAAAGCACAAATATGGGACACGGCAGGTCAAGAGAGGTACCGAGCCATTACGAGTGCTTACTACAGAGGGGCTGTTGGTGCCTTATTGGTGTATGACATAACCAAGAGGCAAACATTTGACAATGCGCAGAGGTGGCTCCGCGAACTAAGAGACCATGCAGACTCTAACATTGTCATAATGATGGCCGGGAACAAATCTGACTTGAATCACCTGAGAGCAGTTCCGGCAGATGATGCTCAAATCTTGGCTGAGAAGGAAGGTCTCTCGTTCCTTGAAACTTCAGCATTGGAGGCCTTCAATGTCGAGAATGCGTTTCAGACCATTTTGTTGGACATTTACCACATAATAAGCAAGAAGGCACTAGCAGCACAGGAGGCAGTTTCTACTGGACTTCCTCAAGGAACTACCATCAATGTTGCAAATATTTCCAGCGACATGAACAAGAGAACTTGTTGCTCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

23.95

Weight (kDa)

6.1

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 131	1.3e-13	ADP-ribosylation factor family
Ras	PF00071	14 - 173	3.5e-61	Ras family
Roc	PF08477	14 - 128	1.4e-34	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	14 - 120	7.7e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07410 AT3G46830 AT3G46830 AT5G59150 AT5G59150
fragaria_vesca	FvH4_3g37150 FvH4_7g23580 FvH4_7g23580
malus_domestica	MD01G1141600.v1.1 MD03G1084700.v1.1 MD07G1205800.v1.1 MD11G1092300.v1.1
prunus_persica	Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.6G068000_v2.0.a1
pyrus_communis	pycom01g16190 pycom03g06690 pycom07g19270
rosa_chinensis	RchiOBHm_Chr1g0368751 RchiOBHm_Chr5g0042031 RchiOBHm_Chr5g0066871
rosa_laevigata	RLG00000027191 RLG00000035884
rosa_multiflora	Rmu_co8341881.1_g000001 Rmu_sc0000605.1_g000057 Rmu_sc0001791.1_g000018 Rmu_sc0005860.1_g000001 Rmu_sc0042332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014250 Rroxscaffold_4G00288300
rosa_rugosa	Rorug01G0344800 Rorug05G0379000 Rorug05G0379000 Rorug05G0379100
rosa_samantha	Rh1AG351800 Rh1BG315500 Rh1CG330200 Rh1DG347000 Rh5AG438800 Rh5BG455700 Rh5CG477800 Rh5DG470500
rosa_wichuraiana	Rw5G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	309
Acc36I	ACCTGC	2 cut(s)	154, 197
Acc65I	GGTACC	1 cut(s)	219
AccB1I	GGYRCC	2 cut(s)	219, 260
AccII	CGCG	1 cut(s)	324
AciI	CCGC	1 cut(s)	322
AclWI	GGATC	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	1 cut(s)	221
AgsI	TTSAA	5 cut(s)	40, 143, 388, 458, 481
Alw26I	GTCTC	2 cut(s)	327, 449
AlwI	GGATC	1 cut(s)	24
AoxI	GGCC	2 cut(s)	366, 474
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	1 cut(s)	143
Asp718I	GGTACC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	310
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	383
BanI	GGYRCC	2 cut(s)	219, 260
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	2 cut(s)	358, 599
BceAI	ACGGC	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	327, 449
BfaI	CTAG	2 cut(s)	153, 545
BfmI	CTRYAG	1 cut(s)	244
BfuAI	ACCTGC	2 cut(s)	154, 197
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
Bme1390I	CCNGG	1 cut(s)	370
BmiI	GGNNCC	3 cut(s)	221, 262, 320
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	406
BpiI	GAAGAC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	564
BpuMI	CCSGG	1 cut(s)	370
BsaI	GGTCTC	2 cut(s)	327, 449
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bse1I	ACTGG	1 cut(s)	574
Bse3DI	GCAATG	1 cut(s)	158
BseMI	GCAATG	1 cut(s)	158
BseMII	CTCAG	2 cut(s)	386, 423
BseNI	ACTGG	1 cut(s)	574
BseXI	GCAGC	1 cut(s)	560
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	2 cut(s)	368, 476
BshNI	GGYRCC	2 cut(s)	219, 260
BsiSI	CCGG	2 cut(s)	369, 407
BslFI	GGGAC	1 cut(s)	212
BsmAI	GTCTC	2 cut(s)	327, 449
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	368, 476
Bso31I	GGTCTC	2 cut(s)	327, 449
Bsp143I	GATC	1 cut(s)	16
BspACI	CCGC	1 cut(s)	322
BspANI	GGCC	2 cut(s)	368, 476
BspCNI	CTCAG	2 cut(s)	387, 424
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	3 cut(s)	221, 262, 320
BspMI	ACCTGC	2 cut(s)	154, 197
BspPI	GGATC	1 cut(s)	24
BspT107I	GGYRCC	2 cut(s)	219, 260
BspTNI	GGTCTC	2 cut(s)	327, 449
BsrDI	GCAATG	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	574
BssMI	GATC	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstDEI	CTNAG	4 cut(s)	123, 329, 395, 432
BstFNI	CGCG	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	2 cut(s)	327, 449
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	7 cut(s)	260, 316, 407, 416, 473, 548, 557
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	244
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	1 cut(s)	560
BstV2I	GAAGAC	1 cut(s)	182
BstXI	CCANNNNNNTGG	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	368, 476
BtsIMutI	CAGTG	1 cut(s)	186
BveI	ACCTGC	2 cut(s)	154, 197
CfoI	GCGC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	2 cut(s)	338, 619
CviJI	RGCY	6 cut(s)	227, 254, 319, 368, 431, 476
CviKI_1	RGCY	6 cut(s)	227, 254, 319, 368, 431, 476
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	4 cut(s)	123, 329, 395, 432
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	476
Eco31I	GGTCTC	2 cut(s)	327, 449
Eco57I	CTGAAG	1 cut(s)	447
FaeI	CATG	2 cut(s)	341, 622
FaiI	YATR	9 cut(s)	9, 27, 196, 276, 281, 339, 359, 527, 620
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	337, 618
Fnu4HI	GCNGC	1 cut(s)	549
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	2 cut(s)	153, 545
FspI	TGCGCA	1 cut(s)	309
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	368, 476
HapII	CCGG	2 cut(s)	369, 407
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	2 cut(s)	341, 622
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HinfI	GANTC	4 cut(s)	59, 119, 344, 388
HpaII	CCGG	2 cut(s)	369, 407
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	2 cut(s)	96, 129
Hpy188I	TCNGA	3 cut(s)	71, 382, 501
Hpy188III	TCNNGA	4 cut(s)	20, 40, 212, 487
Hpy8I	GTNNAC	2 cut(s)	96, 129
HpyAV	CCTTC	4 cut(s)	430, 434, 487, 532
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	4 cut(s)	149, 163, 341, 602
HpyF10VI	GCNNNNNNNGC	7 cut(s)	260, 316, 407, 416, 473, 548, 557
HpyF3I	CTNAG	4 cut(s)	123, 329, 395, 432
Hsp92II	CATG	2 cut(s)	341, 622
HspAI	GCGC	1 cut(s)	308
KpnI	GGTACC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	8 cut(s)	149, 192, 382, 407, 420, 539, 555, 625
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	2 cut(s)	153, 545
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	2 cut(s)	28, 187
MluCI	AATT	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	128, 338
MmeI	TCCRAC	2 cut(s)	49, 492
MslI	CAYNNNNRTG	3 cut(s)	24, 193, 362
MspI	CCGG	2 cut(s)	369, 407
MspR9I	CCNGG	1 cut(s)	370
Mva1269I	GAATGC	1 cut(s)	496
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	7 cut(s)	260, 316, 407, 416, 473, 548, 557
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	2 cut(s)	341, 622
NlaIV	GGNNCC	3 cut(s)	221, 262, 320
NsbI	TGCGCA	1 cut(s)	309
PceI	AGGCCT	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	59, 388
PkrI	GCNGC	1 cut(s)	550
PleI	GAGTC	2 cut(s)	127, 338
PpsI	GAGTC	2 cut(s)	127, 338
PspN4I	GGNNCC	3 cut(s)	221, 262, 320
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	3 cut(s)	24, 193, 362
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	1 cut(s)	16
SchI	GAGTC	2 cut(s)	128, 338
ScrFI	CCNGG	1 cut(s)	370
SetI	ASST	9 cut(s)	15, 36, 95, 168, 211, 221, 317, 396, 445
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	3 cut(s)	24, 193, 362
SmlI	CTYRAG	1 cut(s)	579
SmoI	CTYRAG	1 cut(s)	579
Sse9I	AATT	1 cut(s)	143
SseBI	AGGCCT	1 cut(s)	476
SsiI	CCGC	1 cut(s)	322
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	2 cut(s)	153, 545
StuI	AGGCCT	1 cut(s)	476
StyD4I	CCNGG	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	3 cut(s)	77, 89, 486
TasI	AATT	1 cut(s)	143
TfiI	GAWTC	2 cut(s)	59, 388
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	1 cut(s)	548
TspDTI	ATGAA	1 cut(s)	635
TspRI	CASTG	1 cut(s)	186
XapI	RAATTY	1 cut(s)	143
XspI	CTAG	2 cut(s)	153, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.