Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002078

Physical Location & Seq

Genomic Coordinates Reverse (-)

51450993 .. 51452129

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0379100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGGAGCCTTGGGACAGCCAAGGCCTTATTGGCTCATTTCAGTGTTTTATGGTTTGGCATTGTGCTTCTTAGCTAGTACTACTGTTCTTGCTAACAGTCCTTACACTTATTCTTCACCACCACCTCCTCACCATGCCCCTCAATACCCTCCTCCCCAGTATCAATCACCACCACCAAAATATCCTGAGCACCCTCCACACCATTACAAGTCACCACCACCCCCGCCACCGCCGAAGCATGTGATACATCCTCCGTATCACTACAAGTCTCCCCCGCCACCCTCACCTTCACCTCCACCTCCTTATGTCTACAAGTCTCCACCACCCCCATCACCTTCACCGCCACCTCCATATGTATACAAGTCTCCACCACCTCCATCACCTTCACCTCCTCCTCCCTATGTCTACAAGTCTCCTCCACCCCCATCACCTTCACCGCCACCTCCCTATGTCTACAAGTCTCCACCACCCCCATCACCTTCACCACCACCGCCATACATTTATAAATCACCACCACCACCATCTCCATCACCACCTCCTCCTTACGTTTACAAGTCTCCACCACCACCATCTCCATCACCTCCTCCTCCTTATGTCTACAAGTCTCCACCCCCACCATCACCGTCACCGCCTCCACCATATGTATACAAGTCCCCACCTCCTCCCTCTCCATCACCGCCACCTCCTTATGTTTACAAATCTCCACCACCACCTTCTCCATCACCGCCTCCACCATATGTCTACAAGTCCCCACCTCCTCCTTCTCCATCACCGCCACCTCCTTATGTTTACAAATCTCCACCACCACCTTCTCCATCACCGCCTCCACCATACGTCTACAAGTCCCCACCTCCTCCATCTCCATCACCGCCTCCTCCATACGTCTACAAGTCACCACCACCTCCTCCCTATATTTATAAGTCACCTCCACCACCCTCACCGTCACCTCCTCCTCCTTATCTATACAAGTCCCCACCTCCACCTTCCCCATCACCGCCACCTCCATATGTCTATAAGTCTCCCCCTCCACCATCTCCCTCACCTCCTCCTCCTTATCTCTACAAGTCTCCTCCTCCCCCATCTCACTCTCCACCACCATACTACTACAAGTCCCCTCCACCTCCAAACCACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009504 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0030054 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

378

Amino Acids

40.84

Weight (kDa)

9.61

Isoelectric Point (pI)

161.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07410 AT3G46830 AT3G46830 AT5G59150 AT5G59150
fragaria_vesca	FvH4_3g37150 FvH4_7g23580 FvH4_7g23580
malus_domestica	MD01G1141600.v1.1 MD03G1084700.v1.1 MD07G1205800.v1.1 MD11G1092300.v1.1
prunus_persica	Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.6G068000_v2.0.a1
pyrus_communis	pycom01g16190 pycom03g06690 pycom07g19270
rosa_chinensis	RchiOBHm_Chr1g0368751 RchiOBHm_Chr5g0042031 RchiOBHm_Chr5g0066871
rosa_laevigata	RLG00000027191 RLG00000035884
rosa_multiflora	Rmu_co8341881.1_g000001 Rmu_sc0000605.1_g000057 Rmu_sc0001791.1_g000018 Rmu_sc0005860.1_g000001 Rmu_sc0042332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014250 Rroxscaffold_4G00288300
rosa_rugosa	Rorug01G0344800 Rorug05G0379000 Rorug05G0379000 Rorug05G0379100
rosa_samantha	Rh1AG351800 Rh1BG315500 Rh1CG330200 Rh1DG347000 Rh5AG438800 Rh5BG455700 Rh5CG477800 Rh5DG470500
rosa_wichuraiana	Rw5G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	504, 918
AccI	GTMKAC	9 cut(s)	309, 357, 405, 453, 597, 645, 741, 837, 885
AfaI	GTAC	1 cut(s)	79
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	9 cut(s)	273, 321, 369, 417, 465, 561, 609, 1023, 1071
AoxI	GGCC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	192
BcoDI	GTCTC	9 cut(s)	273, 321, 369, 417, 465, 561, 609, 1023, 1071
BfaI	CTAG	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	31
BmcAI	AGTACT	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	7
BmrI	ACTGGG	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	9, 20
Bse1I	ACTGG	1 cut(s)	157
BseDI	CCNNGG	2 cut(s)	9, 20
BseGI	GGATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	192
BslFI	GGGAC	6 cut(s)	27, 637, 733, 829, 955, 1096
BsmAI	GTCTC	9 cut(s)	273, 321, 369, 417, 465, 561, 609, 1023, 1071
BsmFI	GGGAC	6 cut(s)	27, 637, 733, 829, 955, 1096
BsnI	GGCC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	192
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	2 cut(s)	9, 20
BssNAI	GTATAC	2 cut(s)	358, 646
BssT1I	CCWWGG	2 cut(s)	9, 20
Bst1107I	GTATAC	2 cut(s)	358, 646
Bst4CI	ACNGT	4 cut(s)	85, 98, 624, 942
BstDEI	CTNAG	2 cut(s)	70, 186
BstF5I	GGATG	1 cut(s)	247
BstMAI	GTCTC	9 cut(s)	273, 321, 369, 417, 465, 561, 609, 1023, 1071
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	242
BstZ17I	GTATAC	2 cut(s)	358, 646
BsuRI	GGCC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	2 cut(s)	134, 239
CviJI	RGCY	5 cut(s)	8, 19, 25, 34, 74
CviKI_1	RGCY	5 cut(s)	8, 19, 25, 34, 74
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	2 cut(s)	70, 186
Eco130I	CCWWGG	2 cut(s)	9, 20
Eco147I	AGGCCT	1 cut(s)	25
EcoT14I	CCWWGG	2 cut(s)	9, 20
ErhI	CCWWGG	2 cut(s)	9, 20
FaeI	CATG	2 cut(s)	137, 242
FaqI	GGGAC	6 cut(s)	27, 637, 733, 829, 955, 1096
FatI	CATG	2 cut(s)	133, 238
FauI	CCCGC	2 cut(s)	231, 282
FauNDI	CATATG	4 cut(s)	352, 640, 736, 1006
FblI	GTMKAC	9 cut(s)	309, 357, 405, 453, 597, 645, 741, 837, 885
FokI	GGATG	1 cut(s)	234
FspBI	CTAG	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	25
Hin1II	CATG	2 cut(s)	137, 242
Hpy188III	TCNNGA	1 cut(s)	185
HpyAV	CCTTC	9 cut(s)	297, 345, 393, 441, 489, 723, 771, 819, 993
HpyCH4III	ACNGT	4 cut(s)	85, 98, 624, 942
HpyCH4IV	ACGT	3 cut(s)	546, 834, 882
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	2 cut(s)	70, 186
HpySE526I	ACGT	3 cut(s)	546, 834, 882
Hsp92II	CATG	2 cut(s)	137, 242
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	2 cut(s)	170, 198
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	3 cut(s)	546, 834, 882
MaeIII	GTNAC	5 cut(s)	210, 624, 891, 921, 942
MboII	GAAGA	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeI	CATATG	4 cut(s)	352, 640, 736, 1006
NlaIII	CATG	2 cut(s)	137, 242
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	5 cut(s)	210, 624, 891, 921, 942
NspI	RCATGY	1 cut(s)	242
PceI	AGGCCT	1 cut(s)	25
PsiI	TTATAA	2 cut(s)	504, 918
PspN4I	GGNNCC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	41
ScaI	AGTACT	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	41
SseBI	AGGCCT	1 cut(s)	25
SspMI	CTAG	1 cut(s)	75
StuI	AGGCCT	1 cut(s)	25
StyI	CCWWGG	2 cut(s)	9, 20
TaaI	ACNGT	4 cut(s)	85, 98, 624, 942
TaiI	ACGT	3 cut(s)	549, 837, 885
TatI	WGTACW	1 cut(s)	77
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	5 cut(s)	210, 624, 891, 921, 942
Tsp45I	GTSAC	5 cut(s)	210, 624, 891, 921, 942
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	48
XceI	RCATGY	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XmiI	GTMKAC	9 cut(s)	309, 357, 405, 453, 597, 645, 741, 837, 885
XspI	CTAG	1 cut(s)	75
ZrmI	AGTACT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.