MD11G1092300.v1.1

Rab subfamily of small GTPases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0002078
Physical Location & Seq
Forward (+)
7656810 .. 7661280
4471 bp
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UTR
Exon/CDS
Intron
MD11G1092300.v1.1.491

Sequence Viewer

Length: 291 bp
ATGATGACAGGAAACAAGTCTGACTTGATCAATCTCCGAGCTGTTTCAGAGGATGATGGTCAGTCCTTGGCTGAGAGGGAGGGTCTCTCATTTCTCGAGACATCAGCACTGGAAGCAACCAACGTTGAGAAGGCATTTCAAACTATTCTAACCGAGATCTACCATATTGTCAGCAAGAAAGCACTGGCAGCTCAAGAAGCAGTCTCAACTACCCTACCTGGTCAAGGAACCACCATCAACGTTGGTGACGCTTCTGGGAATACGAACAAGAGAGGTTGCTGCTCGACATAA

Protein Analysis

97

Amino Acids

10.12

Weight (kDa)

4.81

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 1 - 54 7.3e-13 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 2 cut(s) 123, 240
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 1 cut(s) 140
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 2 cut(s) 41, 191
AluI AGCT 2 cut(s) 41, 191
Alw26I GTCTC 3 cut(s) 89, 92, 208
Ama87I CYCGRG 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 188, 279
AsuHPI GGTGA 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 95
BbvI GCAGC 2 cut(s) 200, 266
BccI CCATC 2 cut(s) 50, 242
BciT130I CCWGG 1 cut(s) 219
BclI TGATCA 1 cut(s) 27
BcoDI GTCTC 3 cut(s) 89, 92, 208
BglII AGATCT 1 cut(s) 156
BisI GCNGC 2 cut(s) 189, 280
BlsI GCNGC 2 cut(s) 190, 281
Bme1390I CCNGG 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 219
BplI GAGNNNNNCTC 2 cut(s) 71, 103
BpuEI CTTGAG 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 2 cut(s) 114, 189
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 2 cut(s) 114, 189
BseXI GCAGC 2 cut(s) 200, 266
BsiHKCI CYCGRG 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 3 cut(s) 89, 92, 208
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 95
Bsp143I GATC 2 cut(s) 27, 156
BspCNI CTCAG 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 229
BspTNI GGTCTC 1 cut(s) 89
BsrI ACTGG 2 cut(s) 114, 189
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 2 cut(s) 27, 156
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 72
BstENI CCTNNNNNAGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 2 cut(s) 30, 159
BstMAI GTCTC 3 cut(s) 89, 92, 208
BstMBI GATC 2 cut(s) 27, 156
BstMWI GCNNNNNNNGC 3 cut(s) 113, 188, 197
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 200, 266
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 2 cut(s) 107, 182
CseI GACGC 1 cut(s) 257
CsiI ACCWGGT 1 cut(s) 217
CviJI RGCY 3 cut(s) 41, 71, 191
CviKI_1 RGCY 3 cut(s) 41, 71, 191
DdeI CTNAG 1 cut(s) 72
DpnI GATC 2 cut(s) 29, 158
DpnII GATC 2 cut(s) 27, 156
Eco130I CCWWGG 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaiI YATR 2 cut(s) 165, 289
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 189, 280
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 189, 280
GluI GCNGC 2 cut(s) 189, 280
HgaI GACGC 1 cut(s) 257
HphI GGTGA 1 cut(s) 257
Hpy188I TCNGA 3 cut(s) 22, 38, 49
Hpy188III TCNNGA 3 cut(s) 95, 97, 194
HpyAV CCTTC 1 cut(s) 124
HpyCH4IV ACGT 2 cut(s) 123, 240
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 188, 197
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 2 cut(s) 123, 240
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 2 cut(s) 27, 156
LpnPI CCDG 5 cut(s) 95, 170, 204, 231, 240
Lsp1109I GCAGC 2 cut(s) 200, 266
MabI ACCWGGT 1 cut(s) 217
MaeII ACGT 2 cut(s) 123, 240
MaeIII GTNAC 1 cut(s) 245
MalI GATC 2 cut(s) 29, 158
MboI GATC 2 cut(s) 27, 156
MflI RGATCY 1 cut(s) 156
MnlI CCTC 4 cut(s) 43, 69, 73, 266
MspR9I CCNGG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 3 cut(s) 113, 188, 197
NdeII GATC 2 cut(s) 27, 156
NlaIV GGNNCC 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 245
PaeR7I CTCGAG 1 cut(s) 95
PkrI GCNGC 2 cut(s) 190, 281
Psp1406I AACGTT 2 cut(s) 123, 240
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 229
PsuI RGATCY 1 cut(s) 156
SatI GCNGC 2 cut(s) 189, 280
Sau3AI GATC 2 cut(s) 27, 156
ScrFI CCNGG 1 cut(s) 219
SetI ASST 6 cut(s) 43, 126, 193, 220, 243, 277
SexAI ACCWGGT 1 cut(s) 217
Sfr274I CTCGAG 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 95
SmlI CTYRAG 2 cut(s) 95, 192
SmoI CTYRAG 2 cut(s) 95, 192
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 66
TaiI ACGT 2 cut(s) 126, 243
TaqI TCGA 2 cut(s) 96, 284
TscAI CASTG 2 cut(s) 114, 189
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 2 cut(s) 188, 279
Tsp45I GTSAC 1 cut(s) 245
TspRI CASTG 2 cut(s) 114, 189
XagI CCTNNNNNAGG 1 cut(s) 222
XhoI CTCGAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.