Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8341881.1

Orthogroup ID

OG0002078

Physical Location & Seq

Genomic Coordinates Reverse (-)

56 .. 790

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8341881.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgactcttctgggtaagcatccatatgtgctactgctgtctactggacccaatggttccggagtagctaacattccttgttttaaatcacaggttgaaggaaaaactgtcaaggcacagatctgggatacagcagggcaggagcgatatcgtgctatcaccagtgcatactatagaggggcagtgggtgctctccttgtctatgacataactaagcgcccaacatttgataatgtccaaaggtggctccgtgaattgagggaccatgcggattctaatattgtcatcatgatggctggaaataagtccgacttgaaccatcttagagctgtttcagaggatgatggtcaggccttggctgagagggaaggtctctcatttcttgagacatcagcactcgaagcaaccaatattgagaaggcatttcaaactattttaacagagatctaccatatcattagcaaaaaggcactggcagctcaggaagcagtcgcgagcactacccttcctggtcaaggaactactatcaatgttggtgatgcttctgggaatacgaaaagaggttgctgctctacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009504 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0030054 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

192

Amino Acids

20.79

Weight (kDa)

6.9

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07410 AT3G46830 AT3G46830 AT5G59150 AT5G59150
fragaria_vesca	FvH4_3g37150 FvH4_7g23580 FvH4_7g23580
malus_domestica	MD01G1141600.v1.1 MD03G1084700.v1.1 MD07G1205800.v1.1 MD11G1092300.v1.1
prunus_persica	Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.6G068000_v2.0.a1
pyrus_communis	pycom01g16190 pycom03g06690 pycom07g19270
rosa_chinensis	RchiOBHm_Chr1g0368751 RchiOBHm_Chr5g0042031 RchiOBHm_Chr5g0066871
rosa_laevigata	RLG00000027191 RLG00000035884
rosa_multiflora	Rmu_co8341881.1_g000001 Rmu_sc0000605.1_g000057 Rmu_sc0001791.1_g000018 Rmu_sc0005860.1_g000001 Rmu_sc0042332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014250 Rroxscaffold_4G00288300
rosa_rugosa	Rorug01G0344800 Rorug05G0379000 Rorug05G0379000 Rorug05G0379100
rosa_samantha	Rh1AG351800 Rh1BG315500 Rh1CG330200 Rh1DG347000 Rh5AG438800 Rh5BG455700 Rh5CG477800 Rh5DG470500
rosa_wichuraiana	Rw5G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	41
AccII	CGCG	1 cut(s)	494
AccIII	TCCGGA	1 cut(s)	59
AciI	CCGC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	515
AgsI	TTSAA	3 cut(s)	98, 316, 428
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	3 cut(s)	68, 329, 479
AluI	AGCT	3 cut(s)	68, 329, 479
Alw21I	GWGCWC	2 cut(s)	193, 500
Alw26I	GTCTC	2 cut(s)	377, 380
Aor13HI	TCCGGA	1 cut(s)	59
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	476, 567
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	47, 262
AsuHPI	GGTGA	2 cut(s)	151, 548
AvaII	GGWCC	2 cut(s)	47, 262
Bbv12I	GWGCWC	2 cut(s)	193, 500
BbvI	GCAGC	2 cut(s)	488, 554
BccI	CCATC	3 cut(s)	286, 327, 338
BciT130I	CCWGG	1 cut(s)	510
BciVI	GTATCC	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	377, 380
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	220
BfuI	GTATCC	1 cut(s)	121
BglII	AGATCT	2 cut(s)	120, 444
BisI	GCNGC	2 cut(s)	477, 568
BlsI	GCNGC	2 cut(s)	478, 569
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	2 cut(s)	47, 262
BmgT120I	GGNCC	2 cut(s)	47, 262
BmiI	GGNNCC	4 cut(s)	49, 58, 248, 263
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	2 cut(s)	28, 529
Bpu10I	CCTNAGC	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	354
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse1I	ACTGG	3 cut(s)	49, 162, 477
BseAI	TCCGGA	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	2 cut(s)	19, 346
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMII	CTCAG	2 cut(s)	351, 494
BseNI	ACTGG	3 cut(s)	49, 162, 477
BseXI	GCAGC	2 cut(s)	488, 554
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	1 cut(s)	353
BsiHKAI	GWGCWC	2 cut(s)	193, 500
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	2 cut(s)	377, 380
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	353
Bso31I	GGTCTC	1 cut(s)	377
Bsp1286I	GDGCHC	2 cut(s)	193, 500
Bsp13I	TCCGGA	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	120, 444
Bsp68I	TCGCGA	1 cut(s)	494
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	2 cut(s)	352, 493
BspEI	TCCGGA	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	494
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	4 cut(s)	49, 58, 248, 263
BspTNI	GGTCTC	1 cut(s)	377
BsrI	ACTGG	3 cut(s)	49, 162, 477
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	2 cut(s)	120, 444
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	12
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	4 cut(s)	213, 323, 360, 480
BstENI	CCTNNNNNAGG	1 cut(s)	513
BstF5I	GGATG	2 cut(s)	19, 346
BstFNI	CGCG	1 cut(s)	494
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	2 cut(s)	123, 447
BstMAI	GTCTC	2 cut(s)	377, 380
BstMBI	GATC	2 cut(s)	120, 444
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 401, 476, 485
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	172
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	2 cut(s)	488, 554
BstX2I	RGATCY	2 cut(s)	120, 444
BstYI	RGATCY	2 cut(s)	120, 444
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	19, 346
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	3 cut(s)	169, 189, 470
BtuMI	TCGCGA	1 cut(s)	494
Cac8I	GCNNGC	1 cut(s)	496
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	2 cut(s)	47, 262
CviAII	CATG	2 cut(s)	266, 289
CviJI	RGCY	7 cut(s)	68, 247, 296, 329, 353, 359, 479
CviKI_1	RGCY	7 cut(s)	68, 247, 296, 329, 353, 359, 479
DdeI	CTNAG	4 cut(s)	213, 323, 360, 480
DpnI	GATC	2 cut(s)	122, 446
DpnII	GATC	2 cut(s)	120, 444
DraI	TTTAAA	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	354
Eco147I	AGGCCT	1 cut(s)	353
Eco31I	GGTCTC	1 cut(s)	377
Eco32I	GATATC	1 cut(s)	149
Eco47I	GGWCC	2 cut(s)	47, 262
EcoNI	CCTNNNNNAGG	1 cut(s)	513
EcoRII	CCWGG	1 cut(s)	508
EcoRV	GATATC	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	2 cut(s)	269, 292
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	2 cut(s)	265, 288
FauNDI	CATATG	1 cut(s)	25
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	2 cut(s)	477, 568
FokI	GGATG	2 cut(s)	6, 353
Fsp4HI	GCNGC	2 cut(s)	477, 568
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	2 cut(s)	477, 568
HaeII	RGCGCY	1 cut(s)	220
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	60
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	269, 292
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HinfI	GANTC	2 cut(s)	4, 272
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	2 cut(s)	151, 548
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	2 cut(s)	310, 337
Hpy188III	TCNNGA	5 cut(s)	60, 289, 383, 482, 493
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	4 cut(s)	92, 362, 412, 515
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 401, 476, 485
HpyF3I	CTNAG	4 cut(s)	213, 323, 360, 480
Hsp92II	CATG	2 cut(s)	269, 292
HspAI	GCGC	1 cut(s)	217
Kpn2I	TCCGGA	1 cut(s)	59
Kzo9I	GATC	2 cut(s)	120, 444
LmnI	GCTCC	2 cut(s)	142, 252
Lsp1109I	GCAGC	2 cut(s)	488, 554
LweI	GCATC	2 cut(s)	28, 529
MalI	GATC	2 cut(s)	122, 446
MboI	GATC	2 cut(s)	120, 444
MflI	RGATCY	2 cut(s)	120, 444
MhlI	GDGCHC	2 cut(s)	193, 500
MluCI	AATT	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	5 cut(s)	170, 252, 331, 357, 554
MroI	TCCGGA	1 cut(s)	59
MseI	TTAA	2 cut(s)	84, 437
MslI	CAYNNNNRTG	2 cut(s)	24, 290
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	4 cut(s)	188, 401, 476, 485
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	2 cut(s)	120, 444
NlaIII	CATG	2 cut(s)	269, 292
NlaIV	GGNNCC	4 cut(s)	49, 58, 248, 263
NruI	TCGCGA	1 cut(s)	494
PagI	TCATGA	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	478, 569
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	4 cut(s)	49, 58, 248, 263
PspPI	GGNCC	2 cut(s)	47, 262
PsuI	RGATCY	2 cut(s)	120, 444
RruI	TCGCGA	1 cut(s)	494
RseI	CAYNNNNRTG	2 cut(s)	24, 290
SaqAI	TTAA	2 cut(s)	84, 437
SatI	GCNGC	2 cut(s)	477, 568
Sau3AI	GATC	2 cut(s)	120, 444
Sau96I	GGNCC	2 cut(s)	47, 262
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	2 cut(s)	193, 500
SetI	ASST	7 cut(s)	70, 96, 245, 331, 373, 481, 565
SfaNI	GCATC	2 cut(s)	28, 529
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	2 cut(s)	47, 262
SmiMI	CAYNNNNRTG	2 cut(s)	24, 290
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	1 cut(s)	254
SseBI	AGGCCT	1 cut(s)	353
SsiI	CCGC	1 cut(s)	269
SspI	AATATT	2 cut(s)	280, 412
StuI	AGGCCT	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	399
TasI	AATT	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	84, 437
Tru9I	TTAA	2 cut(s)	84, 437
TscAI	CASTG	3 cut(s)	169, 189, 477
TseI	GCWGC	2 cut(s)	476, 567
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	3 cut(s)	169, 189, 477
VpaK11BI	GGWCC	2 cut(s)	47, 262
XagI	CCTNNNNNAGG	1 cut(s)	513
XmiI	GTMKAC	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.