Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002078

Physical Location & Seq

Genomic Coordinates Reverse (-)

28368375 .. 28370433

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1205800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCGTACAAGGTGGATCACGAATACGATTACCTCTTCAAGATTGTATTGATTGGAGATTCGGGTGTCGGAAAATCGAACATTCTTTCGAGGTTTACGAGGAATGAGTTTTCTTTGGAGTCTAAGTCCACCATTGGAGTTGAATTTGCAACTAGGACATTGCAGATAGAGGGGAAGACTGTGAAAGCACAAATATGGGACACGGCAGGTCAAGAGAGGTACCGAGCCATAACGAGTGCTTACTACAGAGGGGCTGTTGGTGCCTTAATGGTGTATGACATAACCAAGAGGCAAACATTTGACAACGTGCAGAGGTGGCTCCGCGAACTAAGAGACCATGCAGATTCTAACATTGTTATAATGATGGCCGGAAACAAATCTGACTTGAATCACTTGAGAGCAGTTCCAGCAGATGATGCTCAAACCTTGGCCGAGAAGGAAGGCCTCTCGTTCCTCGAAACTTCAGCATTGGAGGCCTTCAATGTCGAGAATGCGTTTCAGACCATTTTGTTGGACATTTATCACATAATAAGCAAGAAGGCACTAGCAGCACAGGAGGCAGTTTCAACTGGACTCCCTCAAGGAACTACCATCAATGTTGGAAATATTTCAGGTGACATGAACAAGAGAACTTGTTGCTCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

23.94

Weight (kDa)

6.1

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 140	1.1e-13	ADP-ribosylation factor family
Ras	PF00071	14 - 173	2.2e-62	Ras family
Roc	PF08477	14 - 128	2.5e-35	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	14 - 120	3.5e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07410 AT3G46830 AT3G46830 AT5G59150 AT5G59150
fragaria_vesca	FvH4_3g37150 FvH4_7g23580 FvH4_7g23580
malus_domestica	MD01G1141600.v1.1 MD03G1084700.v1.1 MD07G1205800.v1.1 MD11G1092300.v1.1
prunus_persica	Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.2G241900_v2.0.a1 Prupe.6G068000_v2.0.a1
pyrus_communis	pycom01g16190 pycom03g06690 pycom07g19270
rosa_chinensis	RchiOBHm_Chr1g0368751 RchiOBHm_Chr5g0042031 RchiOBHm_Chr5g0066871
rosa_laevigata	RLG00000027191 RLG00000035884
rosa_multiflora	Rmu_co8341881.1_g000001 Rmu_sc0000605.1_g000057 Rmu_sc0001791.1_g000018 Rmu_sc0005860.1_g000001 Rmu_sc0042332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014250 Rroxscaffold_4G00288300
rosa_rugosa	Rorug01G0344800 Rorug05G0379000 Rorug05G0379000 Rorug05G0379100
rosa_samantha	Rh1AG351800 Rh1BG315500 Rh1CG330200 Rh1DG347000 Rh5AG438800 Rh5BG455700 Rh5CG477800 Rh5DG470500
rosa_wichuraiana	Rw5G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	197
Acc65I	GGTACC	1 cut(s)	219
AccB1I	GGYRCC	2 cut(s)	219, 260
AccII	CGCG	1 cut(s)	324
AciI	CCGC	1 cut(s)	322
AclWI	GGATC	1 cut(s)	24
AcoI	YGGCCR	2 cut(s)	366, 429
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	2 cut(s)	8, 221
AgsI	TTSAA	5 cut(s)	40, 143, 388, 481, 567
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	24
AoxI	GGCC	4 cut(s)	366, 429, 442, 474
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	607
Asp718I	GGTACC	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	626
BanI	GGYRCC	2 cut(s)	219, 260
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	2 cut(s)	358, 599
BceAI	ACGGC	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	2 cut(s)	153, 545
BfmI	CTRYAG	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
BmiI	GGNNCC	3 cut(s)	221, 262, 320
BmsI	GCATC	1 cut(s)	406
BpiI	GAAGAC	1 cut(s)	182
BpuEI	CTTGAG	2 cut(s)	415, 564
BsaI	GGTCTC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bse1I	ACTGG	1 cut(s)	574
Bse3DI	GCAATG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	426
BseMI	GCAATG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	574
BseXI	GCAGC	1 cut(s)	560
BsgI	GTGCAG	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	4 cut(s)	368, 431, 444, 476
BshNI	GGYRCC	2 cut(s)	219, 260
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	4 cut(s)	368, 431, 444, 476
Bso31I	GGTCTC	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	16
BspACI	CCGC	1 cut(s)	322
BspANI	GGCC	4 cut(s)	368, 431, 444, 476
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	3 cut(s)	221, 262, 320
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	1 cut(s)	24
BspT107I	GGYRCC	2 cut(s)	219, 260
BspTNI	GGTCTC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	574
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstDEI	CTNAG	2 cut(s)	123, 329
BstFNI	CGCG	1 cut(s)	324
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	7 cut(s)	260, 316, 407, 416, 473, 548, 557
BstSFI	CTRYAG	1 cut(s)	244
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	1 cut(s)	560
BstV2I	GAAGAC	1 cut(s)	182
BstXI	CCANNNNNNTGG	1 cut(s)	511
BsuRI	GGCC	4 cut(s)	368, 431, 444, 476
BveI	ACCTGC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	7, 220
CviAII	CATG	2 cut(s)	338, 619
CviJI	RGCY	7 cut(s)	227, 254, 319, 368, 431, 444, 476
CviKI_1	RGCY	7 cut(s)	227, 254, 319, 368, 431, 444, 476
CviQI	GTAC	2 cut(s)	7, 220
DdeI	CTNAG	2 cut(s)	123, 329
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
EaeI	YGGCCR	2 cut(s)	366, 429
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	426
Eco147I	AGGCCT	2 cut(s)	444, 476
Eco31I	GGTCTC	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	2 cut(s)	341, 622
FaiI	YATR	8 cut(s)	196, 230, 276, 281, 339, 359, 527, 620
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	337, 618
Fnu4HI	GCNGC	1 cut(s)	549
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	2 cut(s)	153, 545
GluI	GCNGC	1 cut(s)	549
HaeIII	GGCC	4 cut(s)	368, 431, 444, 476
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	2 cut(s)	341, 622
HinfI	GANTC	5 cut(s)	59, 119, 344, 388, 573
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	1 cut(s)	626
Hpy166II	GTNNAC	2 cut(s)	96, 129
Hpy188I	TCNGA	3 cut(s)	71, 382, 501
Hpy188III	TCNNGA	4 cut(s)	20, 40, 212, 487
Hpy8I	GTNNAC	2 cut(s)	96, 129
HpyAV	CCTTC	4 cut(s)	430, 434, 487, 532
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	4 cut(s)	149, 163, 310, 341
HpyF10VI	GCNNNNNNNGC	7 cut(s)	260, 316, 407, 416, 473, 548, 557
HpyF3I	CTNAG	2 cut(s)	123, 329
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	341, 622
KpnI	GGTACC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	6 cut(s)	192, 382, 420, 539, 555, 597
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	2 cut(s)	153, 545
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	614
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	2 cut(s)	28, 187
MluCI	AATT	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	128, 567
MmeI	TCCRAC	3 cut(s)	49, 492, 580
MroXI	GAANNNNTTC	1 cut(s)	607
MseI	TTAA	1 cut(s)	266
MslI	CAYNNNNRTG	1 cut(s)	193
MspI	CCGG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	496
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	7 cut(s)	260, 316, 407, 416, 473, 548, 557
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	2 cut(s)	341, 622
NlaIV	GGNNCC	3 cut(s)	221, 262, 320
NmeAIII	GCCGAG	1 cut(s)	457
NmuCI	GTSAC	1 cut(s)	614
PceI	AGGCCT	2 cut(s)	444, 476
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PctI	GAATGC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	607
PfeI	GAWTC	3 cut(s)	59, 344, 388
PkrI	GCNGC	1 cut(s)	550
PleI	GAGTC	2 cut(s)	127, 567
PpsI	GAGTC	2 cut(s)	127, 567
PsiI	TTATAA	1 cut(s)	359
PspN4I	GGNNCC	3 cut(s)	221, 262, 320
RsaI	GTAC	2 cut(s)	8, 221
RsaNI	GTAC	2 cut(s)	7, 220
RseI	CAYNNNNRTG	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	1 cut(s)	16
SchI	GAGTC	2 cut(s)	128, 567
SetI	ASST	9 cut(s)	15, 36, 95, 211, 221, 309, 317, 428, 616
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	193
SmlI	CTYRAG	2 cut(s)	394, 579
SmoI	CTYRAG	2 cut(s)	394, 579
Sse9I	AATT	1 cut(s)	143
SseBI	AGGCCT	2 cut(s)	444, 476
SsiI	CCGC	1 cut(s)	322
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	2 cut(s)	153, 545
StuI	AGGCCT	2 cut(s)	444, 476
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	4 cut(s)	77, 89, 456, 486
TasI	AATT	1 cut(s)	143
TfiI	GAWTC	3 cut(s)	59, 344, 388
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	1 cut(s)	635
XapI	RAATTY	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	607
XspI	CTAG	2 cut(s)	153, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.