Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006113

Physical Location & Seq

Genomic Coordinates Reverse (-)

18001283 .. 18003749

Gene Structure 2467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2013 bp

ATGGCGGCGGCAACAACAACAACAACAACATCTTCTTCGATCTCCTTCTCCACCAAACCATCTCCTTCCTCCTCCAAATCACCATTACCAATCTCCAGATTCTCCCTCCCATTCTCCCTAAACCCCAACAAATCATCCTCCTCCTCCCGCCGCCGCGGTATCAAATCCAGCTCTCCCTCCTCCATCTCCGCCGTGCTCAACACAACCACCAATGTCACAACCACTCCCTCTCCAACCAAACCTACCAAACCCGAAACATTCATCTCCCGATTCGCTCCAGATCAACCCCGCAAAGGCGCTGATATCCTCGTCGAAGCTTTAGAACGTCAAGGCGTAGAAACCGTATTCGCTTACCCTGGAGGTGCATCAATGGAGATTCACCAAGCCTTAACCCGCTCTTCCTCAATCCGTAACGTCCTTCCTCGTCACGAACAAGGAGGTGTATTCGCAGCAGAAGGATACGCTCGATCCTCAGGTAAACCAGGTATCTGTATAGCCACTTCAGGTCCCGGAGCTACAAATCTCGTTAGCGGATTAGCCGATGCGTTGTTAGATAGTGTTCCTCTTGTAGCAATCACAGGACAAGTCCCTCGTCGTATGATTGGTACAGATGCGTTTCAAGAGACTCCGATTGTTGAGGTAACGCGTTCGATTACGAAGCATAACTATCTTGTGATGGATGTTGAAGATATCCCTAGGATTATTGAGGAAGCTTTCTTTTTAGCTACTTCTGGTAGACCTGGACCTGTTTTGGTTGATGTTCCTAAAGATATTCAACAACAGCTTGCGATTCCTAATTGGGAACAGGCTATGAGATTACCTGGTTATATGTCTAGGATGCCTAAACCTCCGGAAGATTCTCATTTGGAGCAGATTGTTAGGTTGATTTCTGAGTCTAAGAAGCCTGTGTTGTATGTTGGTGGTGGTTGTTTGAATTCTAGCGATGAATTGGGTAGGTTTGTTGAGCTTACGGGGATCCCTGTTGCGAGTACGTTGATGGGGCTGGGATCTTATCCTTGTGATGATGAGTTGTCGTTACATATGCTTGGAATGCATGGGACTGTGTATGCAAATTACGCTGTGGAGCATAGTGATTTGTTGTTGGCGTTTGGGGTAAGGTTTGATGATCGTGTCACGGGTAAGCTTGAGGCTTTTGCTAGTAGGGCTAAGATTGTTCATATTGATATTGACTCGGCTGAGATTGGGAAGAATAAGACTCCTCATGTGTCTGTGTGTGGTGATGTTAAGCTGGCTTTGCAAGGGATGAATAAGGTTCTTGAGAACCGAGCGGAGGAGCTTAAGCTTGATTTTGGAGTTTGGAGGAATGAGTTGAACGTACAGAAACAGAAGTTTCCGTTGAGCTTTAAGACGTTTGGGGAAGCTATTCCTCCACAGTATGCGATTAAGGTCCTTGATGAGTTGACTGATGGAAAAGCCATAATAAGTACTGGTGTCGGGCAACATCAAATGTGGGCGGCGCAGTTCTACAATTACAAGAAACCAAGGCAGTGGCTATCATCAGGAGGCCTTGGAGCTATGGGATTTGGACTTCCTGCTGCGATTGGAGCGTCTGTTGCTAACCCTGATGCGATAGTTGTGGATATTGACGGAGATGGAAGCTTTATAATGAATGTGCAAGAGCTAGCCACTATTCGTGTAGAGAATCTTCCAGTGAAGGTACTTTTATTAAACAACCAGCATCTTGGCATGGTTATGCAATGGGAAGATCGGTTCTACAAAGCTAACCGAGCTCACACATTTCTCGGGGATCCGGCTCAGGAGGACGAGATATTCCCGAACATGTTGCTGTTTGCAGCAGCTTGCGGGATTCCAGCGGCGAGGGTGACAAAGAAAGCAGATCTCCGAGAAGCTATTCAGACAATGCTGGATACACCAGGACCTTACCTGTTGGATGTGATTTGTCCGCACCAAGAACATGTGTTGCCGATGATCCCGAGTGGTGGCACTTTCAACGATGTCATAACGGAAGGAGATGGCCGGATTAAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009099 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

670

Amino Acids

72.58

Weight (kDa)

6.2

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPP_enzyme_N	PF02776	98 - 208	7e-38	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_M	PF00205	289 - 420	2.1e-45	Thiamine pyrophosphate enzyme, central domain
TPP_enzyme_C	PF02775	484 - 639	4.5e-49	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48560
fragaria_vesca	FvH4_7g06770
malus_domestica	MD06G1028700.v1.1 MD10G1013700.v1.1
prunus_persica	Prupe.5G043100_v2.0.a1 Prupe.8G001300_v2.0.a1 Prupe.8G001300_v2.0.a1
pyrus_communis	pycom06g02280 pycom10g00840
rosa_chinensis	RchiOBHm_Chr7g0208791
rosa_laevigata	RLG00000003195 RLG00000015583
rosa_multiflora	Rmu_co8493263.1_g000001 Rmu_sc0000278.1_g000002 Rmu_sc0008663.1_g000001 Rmu_sc0018750.1_g000002
rosa_roxburghii	Rroxscaffold_3G00250260 Rroxscaffold_7G00217760
rosa_rugosa	Rorug05G0492000 Rorug07G0105800
rosa_samantha	Rh6AG001800 Rh7AG241000 Rh7BG235900 Rh7CG255600 Rh7DG247000
rosa_wichuraiana	Rw6G000240 Rw7G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1625
AccBSI	CCGCTC	2 cut(s)	396, 1289
AccI	GTMKAC	1 cut(s)	736
AccII	CGCG	2 cut(s)	156, 646
AccIII	TCCGGA	1 cut(s)	850
AclWI	GGATC	7 cut(s)	462, 970, 983, 1015, 1763, 1776, 1945
AcoI	YGGCCR	1 cut(s)	1996
AcsI	RAATTY	1 cut(s)	934
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	5 cut(s)	607, 991, 1338, 1447, 1680
AfiI	CCNNNNNNNGG	3 cut(s)	293, 1291, 1961
AflII	CTTAAG	1 cut(s)	1298
AflIII	ACRYGT	3 cut(s)	644, 1800, 1936
AgsI	TTSAA	6 cut(s)	620, 686, 776, 934, 1333, 1972
AjnI	CCWGG	5 cut(s)	355, 481, 739, 820, 1894
AloI	GAACNNNNNNTCC	2 cut(s)	1715, 1747
Alw21I	GWGCWC	2 cut(s)	198, 1753
Alw26I	GTCTC	1 cut(s)	617
AlwI	GGATC	7 cut(s)	462, 970, 983, 1015, 1763, 1776, 1945
Ama87I	CYCGRG	2 cut(s)	1763, 1954
Aor13HI	TCCGGA	1 cut(s)	850
AoxI	GGCC	2 cut(s)	1525, 1996
ApeKI	GCWGC	4 cut(s)	449, 1556, 1814, 1817
ApoI	RAATTY	1 cut(s)	934
Asp700I	GAANNNNTTC	2 cut(s)	1383, 1872
AspA2I	CCTAGG	1 cut(s)	695
AspLEI	GCGC	2 cut(s)	299, 1480
AspS9I	GGNCC	4 cut(s)	506, 743, 1408, 1898
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	4 cut(s)	72, 371, 1250, 1855
AsuNHI	GCTAGC	1 cut(s)	1642
AvaI	CYCGRG	2 cut(s)	1763, 1954
AvaII	GGWCC	4 cut(s)	506, 743, 1408, 1898
AvrII	CCTAGG	1 cut(s)	695
AxyI	CCTNAGG	1 cut(s)	472
BamHI	GGATCC	2 cut(s)	975, 1768
BanII	GRGCYC	1 cut(s)	1753
BarI	GAAGNNNNNNTAC	4 cut(s)	484, 516, 1650, 1682
Bbv12I	GWGCWC	2 cut(s)	198, 1753
BbvI	GCAGC	4 cut(s)	461, 1543, 1826, 1829
BccI	CCATC	7 cut(s)	67, 191, 670, 991, 1421, 1607, 1988
BceAI	ACGGC	1 cut(s)	176
BcgI	CGANNNNNNTGC	2 cut(s)	1786, 1820
BciT130I	CCWGG	5 cut(s)	357, 483, 741, 822, 1896
BciVI	GTATCC	2 cut(s)	452, 1882
BcnI	CCSGG	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	617
BfaI	CTAG	5 cut(s)	696, 834, 939, 1158, 1643
BfoI	RGCGCY	1 cut(s)	300
BfrI	CTTAAG	1 cut(s)	1298
BfuI	GTATCC	2 cut(s)	452, 1882
BglII	AGATCT	1 cut(s)	1858
BlnI	CCTAGG	1 cut(s)	695
BmcAI	AGTACT	1 cut(s)	1447
Bme1390I	CCNGG	6 cut(s)	357, 483, 510, 741, 822, 1896
Bme18I	GGWCC	4 cut(s)	506, 743, 1408, 1898
BmeT110I	CYCGRG	2 cut(s)	1763, 1954
BmgT120I	GGNCC	4 cut(s)	506, 743, 1408, 1898
BmiI	GGNNCC	3 cut(s)	508, 977, 1770
BmrFI	CCNGG	6 cut(s)	357, 483, 510, 741, 822, 1896
BmsI	GCATC	6 cut(s)	374, 532, 601, 828, 1576, 1708
BmtI	GCTAGC	1 cut(s)	1646
BpmI	CTGGAG	3 cut(s)	79, 261, 378
Bpu10I	CCTNAGC	1 cut(s)	1776
BpuEI	CTTGAG	2 cut(s)	1166, 1298
BpuMI	CCSGG	1 cut(s)	510
BsaJI	CCNNGG	5 cut(s)	154, 355, 695, 1502, 1528
BsaWI	WCCGGW	1 cut(s)	850
BsaXI	ACNNNNNCTCC	6 cut(s)	208, 214, 238, 244, 1557, 1587
Bsc4I	CCNNNNNNNGG	3 cut(s)	293, 1291, 1961
Bse1I	ACTGG	2 cut(s)	1453, 1670
Bse21I	CCTNAGG	1 cut(s)	472
Bse3DI	GCAATG	1 cut(s)	1724
BseAI	TCCGGA	1 cut(s)	850
BseBI	CCWGG	5 cut(s)	357, 483, 741, 822, 1896
BseDI	CCNNGG	5 cut(s)	154, 355, 695, 1502, 1528
BseGI	GGATG	5 cut(s)	134, 685, 843, 1269, 1918
BseLI	CCNNNNNNNGG	3 cut(s)	293, 1291, 1961
BseMI	GCAATG	1 cut(s)	1724
BseMII	CTCAG	4 cut(s)	486, 882, 1188, 1790
BseNI	ACTGG	2 cut(s)	1453, 1670
BseRI	GAGGAG	6 cut(s)	61, 130, 133, 169, 1209, 1307
BseXI	GCAGC	4 cut(s)	461, 1543, 1826, 1829
BseYI	CCCAGC	1 cut(s)	1003
Bsh1236I	CGCG	2 cut(s)	156, 646
BshFI	GGCC	2 cut(s)	1527, 1998
BsiHKAI	GWGCWC	2 cut(s)	198, 1753
BsiHKCI	CYCGRG	2 cut(s)	1763, 1954
BsiSI	CCGG	4 cut(s)	510, 851, 1772, 1999
BslFI	GGGAC	3 cut(s)	492, 572, 1072
BslI	CCNNNNNNNGG	3 cut(s)	293, 1291, 1961
BsmAI	GTCTC	1 cut(s)	617
BsmFI	GGGAC	3 cut(s)	492, 572, 1072
BsmI	GAATGC	1 cut(s)	1056
BsnI	GGCC	2 cut(s)	1527, 1998
BsoBI	CYCGRG	2 cut(s)	1763, 1954
Bsp1286I	GDGCHC	2 cut(s)	198, 1753
Bsp13I	TCCGGA	1 cut(s)	850
BspANI	GGCC	2 cut(s)	1527, 1998
BspCNI	CTCAG	4 cut(s)	485, 883, 1189, 1789
BspEI	TCCGGA	1 cut(s)	850
BspFNI	CGCG	2 cut(s)	156, 646
BspLI	GGNNCC	3 cut(s)	508, 977, 1770
BspOI	GCTAGC	1 cut(s)	1646
BspPI	GGATC	7 cut(s)	462, 970, 983, 1015, 1763, 1776, 1945
BspQI	GCTCTTC	1 cut(s)	403
BspTI	CTTAAG	1 cut(s)	1298
BsrBI	CCGCTC	2 cut(s)	396, 1289
BsrDI	GCAATG	1 cut(s)	1724
BsrI	ACTGG	2 cut(s)	1453, 1670
BssECI	CCNNGG	5 cut(s)	154, 355, 695, 1502, 1528
BssT1I	CCWWGG	3 cut(s)	695, 1502, 1528
Bst2UI	CCWGG	5 cut(s)	357, 483, 741, 822, 1896
Bst4CI	ACNGT	3 cut(s)	343, 1063, 1395
Bst6I	CTCTTC	1 cut(s)	403
BstAFI	CTTAAG	1 cut(s)	1298
BstC8I	GCNNGC	4 cut(s)	786, 1251, 1644, 1822
BstDEI	CTNAG	6 cut(s)	472, 891, 897, 1167, 1197, 1776
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	5 cut(s)	134, 685, 843, 1269, 1918
BstFNI	CGCG	2 cut(s)	156, 646
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	2 cut(s)	299, 1480
BstMAI	GTCTC	1 cut(s)	617
BstMWI	GCNNNNNNNGC	7 cut(s)	1051, 1076, 1163, 1255, 1565, 1574, 1748
BstNI	CCWGG	5 cut(s)	357, 483, 741, 822, 1896
BstNSI	RCATGY	2 cut(s)	1804, 1940
BstSCI	CCNGG	6 cut(s)	355, 481, 508, 739, 820, 1894
BstUI	CGCG	2 cut(s)	156, 646
BstV1I	GCAGC	4 cut(s)	461, 1543, 1826, 1829
BstX2I	RGATCY	4 cut(s)	975, 1007, 1768, 1858
BstXI	CCANNNNNNTGG	2 cut(s)	1509, 1703
BstYI	RGATCY	4 cut(s)	975, 1007, 1768, 1858
Bsu36I	CCTNAGG	1 cut(s)	472
BsuI	GTATCC	2 cut(s)	452, 1882
BsuRI	GGCC	2 cut(s)	1527, 1998
BtgI	CCRYGG	1 cut(s)	154
BtgZI	GCGATG	1 cut(s)	957
BtsCI	GGATG	5 cut(s)	134, 685, 843, 1269, 1918
BtsI	GCAGTG	1 cut(s)	1514
BtsIMutI	CAGTG	2 cut(s)	1514, 1677
Cac8I	GCNNGC	4 cut(s)	786, 1251, 1644, 1822
CfoI	GCGC	2 cut(s)	299, 1480
Cfr13I	GGNCC	4 cut(s)	506, 743, 1408, 1898
Cfr42I	CCGCGG	1 cut(s)	157
CseI	GACGC	1 cut(s)	1557
CsiI	ACCWGGT	2 cut(s)	481, 820
Csp6I	GTAC	5 cut(s)	606, 990, 1337, 1446, 1679
CviAII	CATG	5 cut(s)	1055, 1223, 1708, 1801, 1937
CviQI	GTAC	5 cut(s)	606, 990, 1337, 1446, 1679
DdeI	CTNAG	6 cut(s)	472, 891, 897, 1167, 1197, 1776
EaeI	YGGCCR	1 cut(s)	1996
Eam1104I	CTCTTC	1 cut(s)	403
EarI	CTCTTC	1 cut(s)	403
EciI	GGCGGA	1 cut(s)	178
Ecl136II	GAGCTC	1 cut(s)	1751
Eco130I	CCWWGG	3 cut(s)	695, 1502, 1528
Eco147I	AGGCCT	1 cut(s)	1527
Eco24I	GRGCYC	1 cut(s)	1753
Eco32I	GATATC	2 cut(s)	304, 691
Eco47I	GGWCC	4 cut(s)	506, 743, 1408, 1898
Eco53kI	GAGCTC	1 cut(s)	1751
Eco57I	CTGAAG	1 cut(s)	486
Eco81I	CCTNAGG	1 cut(s)	472
Eco88I	CYCGRG	2 cut(s)	1763, 1954
EcoICRI	GAGCTC	1 cut(s)	1751
EcoO109I	RGGNCCY	3 cut(s)	506, 1408, 1898
EcoRI	GAATTC	1 cut(s)	934
EcoRII	CCWGG	5 cut(s)	355, 481, 739, 820, 1894
EcoRV	GATATC	2 cut(s)	304, 691
EcoT14I	CCWWGG	3 cut(s)	695, 1502, 1528
EcoT22I	ATGCAT	1 cut(s)	1056
EcoT38I	GRGCYC	1 cut(s)	1753
ErhI	CCWWGG	3 cut(s)	695, 1502, 1528
FaeI	CATG	5 cut(s)	1058, 1226, 1711, 1804, 1940
FaqI	GGGAC	3 cut(s)	492, 572, 1072
FatI	CATG	5 cut(s)	1054, 1222, 1707, 1800, 1936
FauI	CCCGC	4 cut(s)	155, 296, 401, 1817
FauNDI	CATATG	1 cut(s)	1041
FblI	GTMKAC	1 cut(s)	736
FokI	GGATG	5 cut(s)	121, 692, 850, 1276, 1925
FriOI	GRGCYC	1 cut(s)	1753
FspBI	CTAG	5 cut(s)	696, 834, 939, 1158, 1643
GlaI	GCGC	2 cut(s)	298, 1479
GsaI	CCCAGC	1 cut(s)	1007
GsuI	CTGGAG	3 cut(s)	79, 261, 378
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	1527, 1998
HapII	CCGG	4 cut(s)	510, 851, 1772, 1999
HgaI	GACGC	1 cut(s)	1557
HhaI	GCGC	2 cut(s)	299, 1480
Hin1II	CATG	5 cut(s)	1058, 1226, 1711, 1804, 1940
Hin6I	GCGC	2 cut(s)	297, 1478
HinP1I	GCGC	2 cut(s)	297, 1478
HincII	GTYRAC	1 cut(s)	1422
HindII	GTYRAC	1 cut(s)	1422
HindIII	AAGCTT	5 cut(s)	315, 711, 1142, 1301, 1618
HpaII	CCGG	4 cut(s)	510, 851, 1772, 1999
HphI	GGTGA	4 cut(s)	72, 371, 1250, 1855
Hpy166II	GTNNAC	3 cut(s)	479, 737, 1422
Hpy188I	TCNGA	4 cut(s)	630, 892, 1865, 1878
Hpy8I	GTNNAC	3 cut(s)	479, 737, 1422
Hpy99I	CGWCG	2 cut(s)	314, 597
HpyAV	CCTTC	6 cut(s)	55, 75, 428, 449, 1669, 1982
HpyCH4III	ACNGT	3 cut(s)	343, 1063, 1395
HpyCH4IV	ACGT	5 cut(s)	325, 414, 992, 1335, 1370
HpyCH4V	TGCA	7 cut(s)	365, 1054, 1070, 1258, 1636, 1717, 1814
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1051, 1076, 1163, 1255, 1565, 1574, 1748
HpyF3I	CTNAG	6 cut(s)	472, 891, 897, 1167, 1197, 1776
HpySE526I	ACGT	5 cut(s)	325, 414, 992, 1335, 1370
Hsp92II	CATG	5 cut(s)	1058, 1226, 1711, 1804, 1940
HspAI	GCGC	2 cut(s)	297, 1478
Kpn2I	TCCGGA	1 cut(s)	850
KspI	CCGCGG	1 cut(s)	157
LguI	GCTCTTC	1 cut(s)	403
LmnI	GCTCC	7 cut(s)	280, 512, 868, 1084, 1294, 1532, 1565
Lsp1109I	GCAGC	4 cut(s)	461, 1543, 1826, 1829
LweI	GCATC	6 cut(s)	374, 532, 601, 828, 1576, 1708
MabI	ACCWGGT	2 cut(s)	481, 820
MaeI	CTAG	5 cut(s)	696, 834, 939, 1158, 1643
MaeII	ACGT	5 cut(s)	325, 414, 992, 1335, 1370
MaeIII	GTNAC	7 cut(s)	214, 410, 425, 640, 1035, 1132, 1843
MbiI	CCGCTC	2 cut(s)	396, 1289
MboII	GAAGA	8 cut(s)	24, 27, 390, 698, 866, 1219, 1658, 1736
MflI	RGATCY	4 cut(s)	975, 1007, 1768, 1858
MhlI	GDGCHC	2 cut(s)	198, 1753
MluCI	AATT	5 cut(s)	796, 934, 947, 1072, 1489
MluI	ACGCGT	1 cut(s)	644
MlyI	GAGTC	4 cut(s)	619, 902, 1184, 1210
MmeI	TCCRAC	2 cut(s)	257, 1890
Mph1103I	ATGCAT	1 cut(s)	1056
MroI	TCCGGA	1 cut(s)	850
MroXI	GAANNNNTTC	2 cut(s)	1383, 1872
MseI	TTAA	7 cut(s)	389, 1245, 1299, 1365, 1404, 1688, 2004
MslI	CAYNNNNRTG	1 cut(s)	1712
MspA1I	CMGCKG	2 cut(s)	156, 1835
MspCI	CTTAAG	1 cut(s)	1298
MspI	CCGG	4 cut(s)	510, 851, 1772, 1999
MspR9I	CCNGG	6 cut(s)	357, 483, 510, 741, 822, 1896
Mva1269I	GAATGC	1 cut(s)	1056
MvaI	CCWGG	5 cut(s)	357, 483, 741, 822, 1896
MvnI	CGCG	2 cut(s)	156, 646
MwoI	GCNNNNNNNGC	7 cut(s)	1051, 1076, 1163, 1255, 1565, 1574, 1748
NciI	CCSGG	1 cut(s)	510
NdeI	CATATG	1 cut(s)	1041
NheI	GCTAGC	1 cut(s)	1642
NlaIII	CATG	5 cut(s)	1058, 1226, 1711, 1804, 1940
NlaIV	GGNNCC	3 cut(s)	508, 977, 1770
NmeAIII	GCCGAG	1 cut(s)	1172
NmuCI	GTSAC	4 cut(s)	214, 425, 1132, 1843
NsiI	ATGCAT	1 cut(s)	1056
NspI	RCATGY	2 cut(s)	1804, 1940
PceI	AGGCCT	1 cut(s)	1527
PciI	ACATGT	2 cut(s)	1800, 1936
PciSI	GCTCTTC	1 cut(s)	403
PctI	GAATGC	1 cut(s)	1056
PdmI	GAANNNNTTC	2 cut(s)	1383, 1872
PfeI	GAWTC	7 cut(s)	99, 270, 376, 790, 857, 1663, 1828
PfoI	TCCNGGA	1 cut(s)	508
PleI	GAGTC	4 cut(s)	619, 901, 1184, 1210
PpsI	GAGTC	4 cut(s)	619, 901, 1184, 1210
PpuMI	RGGWCCY	3 cut(s)	506, 1408, 1898
PscI	ACATGT	2 cut(s)	1800, 1936
PsiI	TTATAA	1 cut(s)	1625
Psp124BI	GAGCTC	1 cut(s)	1753
Psp5II	RGGWCCY	3 cut(s)	506, 1408, 1898
Psp6I	CCWGG	5 cut(s)	355, 481, 739, 820, 1894
PspFI	CCCAGC	1 cut(s)	1003
PspGI	CCWGG	5 cut(s)	355, 481, 739, 820, 1894
PspN4I	GGNNCC	3 cut(s)	508, 977, 1770
PspPI	GGNCC	4 cut(s)	506, 743, 1408, 1898
PspPPI	RGGWCCY	3 cut(s)	506, 1408, 1898
PsuI	RGATCY	4 cut(s)	975, 1007, 1768, 1858
RsaI	GTAC	5 cut(s)	607, 991, 1338, 1447, 1680
RsaNI	GTAC	5 cut(s)	606, 990, 1337, 1446, 1679
RseI	CAYNNNNRTG	1 cut(s)	1712
SacI	GAGCTC	1 cut(s)	1753
SacII	CCGCGG	1 cut(s)	157
SapI	GCTCTTC	1 cut(s)	403
SaqAI	TTAA	7 cut(s)	389, 1245, 1299, 1365, 1404, 1688, 2004
Sau96I	GGNCC	4 cut(s)	506, 743, 1408, 1898
ScaI	AGTACT	1 cut(s)	1447
SchI	GAGTC	4 cut(s)	619, 902, 1184, 1210
ScrFI	CCNGG	6 cut(s)	357, 483, 510, 741, 822, 1896
SduI	GDGCHC	2 cut(s)	198, 1753
SexAI	ACCWGGT	2 cut(s)	481, 820
SfaNI	GCATC	6 cut(s)	374, 532, 601, 828, 1576, 1708
Sfr303I	CCGCGG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	157
SinI	GGWCC	4 cut(s)	506, 743, 1408, 1898
SmiMI	CAYNNNNRTG	1 cut(s)	1712
SmlI	CTYRAG	3 cut(s)	1145, 1277, 1298
SmoI	CTYRAG	3 cut(s)	1145, 1277, 1298
Sse9I	AATT	5 cut(s)	796, 934, 947, 1072, 1489
SseBI	AGGCCT	1 cut(s)	1527
SspMI	CTAG	5 cut(s)	696, 834, 939, 1158, 1643
SstI	GAGCTC	1 cut(s)	1753
StuI	AGGCCT	1 cut(s)	1527
StyD4I	CCNGG	6 cut(s)	355, 481, 508, 739, 820, 1894
StyI	CCWWGG	3 cut(s)	695, 1502, 1528
TaaI	ACNGT	3 cut(s)	343, 1063, 1395
TaiI	ACGT	5 cut(s)	328, 417, 995, 1338, 1373
TaqI	TCGA	4 cut(s)	38, 312, 466, 650
TasI	AATT	5 cut(s)	796, 934, 947, 1072, 1489
TatI	WGTACW	1 cut(s)	1445
TauI	GCSGC	6 cut(s)	8, 11, 153, 156, 1478, 1838
TfiI	GAWTC	7 cut(s)	99, 270, 376, 790, 857, 1663, 1828
Tru1I	TTAA	7 cut(s)	389, 1245, 1299, 1365, 1404, 1688, 2004
Tru9I	TTAA	7 cut(s)	389, 1245, 1299, 1365, 1404, 1688, 2004
TscAI	CASTG	2 cut(s)	1514, 1677
TseFI	GTSAC	4 cut(s)	214, 425, 1132, 1843
TseI	GCWGC	4 cut(s)	449, 1556, 1814, 1817
Tsp45I	GTSAC	4 cut(s)	214, 425, 1132, 1843
TspDTI	ATGAA	5 cut(s)	250, 960, 1166, 1280, 1643
TspGWI	ACGGA	4 cut(s)	398, 1344, 1623, 2000
TspRI	CASTG	2 cut(s)	1514, 1677
Vha464I	CTTAAG	1 cut(s)	1298
VpaK11BI	GGWCC	4 cut(s)	506, 743, 1408, 1898
XapI	RAATTY	1 cut(s)	934
XceI	RCATGY	2 cut(s)	1804, 1940
XmaJI	CCTAGG	1 cut(s)	695
XmiI	GTMKAC	1 cut(s)	736
XmnI	GAANNNNTTC	2 cut(s)	1383, 1872
XspI	CTAG	5 cut(s)	696, 834, 939, 1158, 1643
ZrmI	AGTACT	1 cut(s)	1447
Zsp2I	ATGCAT	1 cut(s)	1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.