Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006113

Physical Location & Seq

Genomic Coordinates Forward (+)

483949 .. 485591

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G000240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGGAGATCCATCAGGCCCTCACGCGCTCCTCCACCATCCGCAATGTTCTCCCCCGCCACGAGCAAGGTGGCATCTTCGCTGCTGAGGGCTACGCGCGCGCCTCGGGCCTTCCCGGCGTCTGTATCGCAACCTCGGGCCCTGGCGCTACCAACTTAGTCAGTGGCCTTGCTGACGCACTCCTTGACAGCGTTCCGGTCGTCGCTATCACCGGACAAGTCCCCCGCCGGATGATCGGTACCGACGCTTTTCAAGAGACCCCAATTGTAGAGGTAACCAGGTCCATTACAAAGCATAACTATCTTGTTCTTGATGTTGAAGAAATTCCTAGAATTGTTAGTGAGGCATTTTTCTTGGCCACCTCCGGCCGCCCCGGCCCAGTTTTGATAGATATACCAAAAGACATACAGCAACAGCTTGTTGTTCCGGATTGGAATCAACCCATTAGATTAGCGGGGTACCTGTCTAGGCTGCCCAATCCTCCCAATGAGGCCCATTTGGAGCAGATTGTAAGGTTGGTTTCCGAATCCAAGAAGCCTGTGTTGTATGTTGGTGGAGGGTGCTTGAACTCGAGTGAGGAATTGAGGCGATTTGTGGAGTTTACTGGGATCCCTGTCGCGACTACCTTGATGGGTCTCGGGGCATATCCTAGCTCAGATGAGCTGTCACTCCAAATGTTGGGAATGCATGGGACAGTGCATGCTAATTATGCAGTGGATAAGTCTGACTTGTTGCTTGCATTTGGGGTTAGGTTTGATGACCGGGTTACAGGGAAGCTCGAAGCTTTTGCTAGCCGAGCTAAGATTGTTCACATTGATATTGATTCTGCAGAGATTGGAAAGAATAAGCAGCCTCATGTATCTGTTTGTGCAGATGTATTGGAGGGAAAAGGATACAAGTTCAAACTTGATTTCTCAGCCTGGAGGGAGGAGCTGAAAGAGCAGAAAATTAGTTATCCATTAAATTATAAGACATTTGGTGACGCCATTCCTCCTCAGTGTGCTATTCAGGTTCTTGATGAATTAACTGATGGGAATGCAATCATAAGCACCGGTGTCGGGCAGCATCAAATGTGGGCAGCTCAATTTTACAAATATAAGAGGCCTAGACAGTGGTTGACATCAGGAGGTTTAGGAGCTATGGGTTTTGGATTGCCTGCTGCTATTGGGGCAGCTGTGGCAAATCCAGATGCCATTGTTGTTGATATTGATGGTGATGGAAGCTTCATGATGAATGTTCAGGAATTAGCAACTATCAGGGTGGAAAATCTTCCCATTAAGATAATGCTGTTGAATAATCAGCATTTGGGTATGGTTGTTCAATGGGAGGATCGCTTCTATAAGGCGAATAGGGCTCACACTTATTTAGGGAACCCATTAAATGAGTCTGAGATATTCCCTAATATGCTCAAGTTCGCAGAAGCTTGTGGGATACCAGCTGCCCGTGTGACAAAGAAGGAACATCTTAAAGAGGCAATTCAGAAAATGCTGGACACTCCTGGTCCATACTTGTTGGATGTAGTAGTACCTCATCAAGAGCATGTCTTGCCCATGATTCCGAGTGGTGGTGCTTTTAAAGATGTGATAACTGAGGGTGATGGAAGATCATCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009099 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

537

Amino Acids

58.67

Weight (kDa)

5.82

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPP_enzyme_N	PF02776	3 - 85	3.2e-26	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_M	PF00205	166 - 292	3.1e-44	Thiamine pyrophosphate enzyme, central domain
TPP_enzyme_C	PF02775	351 - 506	2.4e-52	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48560
fragaria_vesca	FvH4_7g06770
malus_domestica	MD06G1028700.v1.1 MD10G1013700.v1.1
prunus_persica	Prupe.5G043100_v2.0.a1 Prupe.8G001300_v2.0.a1 Prupe.8G001300_v2.0.a1
pyrus_communis	pycom06g02280 pycom10g00840
rosa_chinensis	RchiOBHm_Chr7g0208791
rosa_laevigata	RLG00000003195 RLG00000015583
rosa_multiflora	Rmu_co8493263.1_g000001 Rmu_sc0000278.1_g000002 Rmu_sc0008663.1_g000001 Rmu_sc0018750.1_g000002
rosa_roxburghii	Rroxscaffold_3G00250260 Rroxscaffold_7G00217760
rosa_rugosa	Rorug05G0492000 Rorug07G0105800
rosa_samantha	Rh6AG001800 Rh7AG241000 Rh7BG235900 Rh7CG255600 Rh7DG247000
rosa_wichuraiana	Rw6G000240 Rw7G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	966
Acc65I	GGTACC	2 cut(s)	236, 456
AccB1I	GGYRCC	2 cut(s)	236, 456
AccB7I	CCANNNNNTGG	1 cut(s)	676
AccII	CGCG	5 cut(s)	25, 95, 97, 99, 617
AccIII	TCCGGA	1 cut(s)	424
AciI	CCGC	5 cut(s)	40, 55, 223, 367, 452
AclWI	GGATC	3 cut(s)	601, 614, 1335
AcoI	YGGCCR	2 cut(s)	354, 364
AcsI	RAATTY	1 cut(s)	321
AcyI	GRCGYC	2 cut(s)	117, 981
AfaI	GTAC	3 cut(s)	238, 458, 1524
AfiI	CCNNNNNNNGG	3 cut(s)	676, 1056, 1562
AgeI	ACCGGT	1 cut(s)	1049
AgsI	TTSAA	6 cut(s)	251, 317, 565, 901, 1291, 1319
AjnI	CCWGG	4 cut(s)	139, 275, 917, 1495
Alw26I	GTCTC	2 cut(s)	248, 638
AlwI	GGATC	3 cut(s)	601, 614, 1335
Ama87I	CYCGRG	4 cut(s)	103, 133, 568, 635
Aor13HI	TCCGGA	1 cut(s)	424
AoxI	GGCC	9 cut(s)	15, 106, 136, 163, 354, 364, 373, 489, 1100
ApaI	GGGCCC	1 cut(s)	140
ApeKI	GCWGC	8 cut(s)	80, 469, 847, 1060, 1076, 1157, 1169, 1436
ApoI	RAATTY	1 cut(s)	321
AsiGI	ACCGGT	1 cut(s)	1049
Asp700I	GAANNNNTTC	2 cut(s)	321, 1266
Asp718I	GGTACC	2 cut(s)	236, 456
AspLEI	GCGC	5 cut(s)	27, 97, 99, 101, 146
AspS9I	GGNCC	8 cut(s)	16, 106, 136, 137, 279, 374, 490, 1499
AsuC2I	CCSGG	3 cut(s)	114, 372, 761
AsuHPI	GGTGA	4 cut(s)	199, 989, 1223, 1604
AsuNHI	GCTAGC	1 cut(s)	788
AvaI	CYCGRG	4 cut(s)	103, 133, 568, 635
AvaII	GGWCC	2 cut(s)	279, 1499
BaeGI	GKGCMC	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	606
BanI	GGYRCC	2 cut(s)	236, 456
BanII	GRGCYC	2 cut(s)	140, 1354
BauI	CACGAG	1 cut(s)	59
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	8 cut(s)	67, 456, 859, 1072, 1088, 1144, 1181, 1423
BccI	CCATC	7 cut(s)	18, 44, 622, 1022, 1202, 1208, 1589
BcgI	CGANNNNNNTGC	4 cut(s)	767, 801, 1036, 1070
BciT130I	CCWGG	4 cut(s)	141, 277, 919, 1497
BciVI	GTATCC	2 cut(s)	884, 1422
BcnI	CCSGG	3 cut(s)	114, 372, 761
BcoDI	GTCTC	2 cut(s)	248, 638
BfaI	CTAG	5 cut(s)	327, 465, 648, 789, 1104
BfmI	CTRYAG	1 cut(s)	825
BfoI	RGCGCY	1 cut(s)	147
BfuI	GTATCC	2 cut(s)	884, 1422
BglI	GCCNNNNNGGC	2 cut(s)	114, 372
BisI	GCNGC	9 cut(s)	81, 367, 470, 848, 1061, 1077, 1158, 1170, 1437
BlsI	GCNGC	9 cut(s)	82, 368, 471, 849, 1062, 1078, 1159, 1171, 1438
Bme1390I	CCNGG	7 cut(s)	114, 141, 277, 372, 761, 919, 1497
Bme18I	GGWCC	2 cut(s)	279, 1499
BmeT110I	CYCGRG	4 cut(s)	103, 133, 568, 635
BmgT120I	GGNCC	8 cut(s)	16, 106, 136, 137, 279, 374, 490, 1499
BmiI	GGNNCC	5 cut(s)	138, 238, 458, 608, 1370
BmrFI	CCNGG	7 cut(s)	114, 141, 277, 372, 761, 919, 1497
BmrI	ACTGGG	2 cut(s)	371, 612
BmsI	GCATC	3 cut(s)	81, 1072, 1177
BmtI	GCTAGC	1 cut(s)	792
BmuI	ACTGGG	2 cut(s)	371, 612
BpmI	CTGGAG	1 cut(s)	940
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	1391
BpuMI	CCSGG	3 cut(s)	114, 372, 761
BsaBI	GATNNNNATC	1 cut(s)	432
BsaHI	GRCGYC	2 cut(s)	117, 981
BsaI	GGTCTC	2 cut(s)	248, 638
BsaJI	CCNNGG	4 cut(s)	102, 132, 139, 370
BsaWI	WCCGGW	4 cut(s)	193, 209, 424, 1049
Bsc4I	CCNNNNNNNGG	3 cut(s)	676, 1056, 1562
Bse118I	RCCGGY	1 cut(s)	1049
Bse1I	ACTGG	2 cut(s)	377, 607
Bse3DI	GCAATG	1 cut(s)	49
Bse8I	GATNNNNATC	1 cut(s)	432
BseAI	TCCGGA	1 cut(s)	424
BseBI	CCWGG	4 cut(s)	141, 277, 919, 1497
BseDI	CCNNGG	4 cut(s)	102, 132, 139, 370
BseGI	GGATG	3 cut(s)	36, 234, 1519
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	3 cut(s)	676, 1056, 1562
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	6 cut(s)	75, 666, 927, 1007, 1377, 1578
BseNI	ACTGG	2 cut(s)	377, 607
BsePI	GCGCGC	2 cut(s)	95, 97
BseRI	GAGGAG	3 cut(s)	19, 941, 981
BseSI	GKGCMC	1 cut(s)	140
BseX3I	CGGCCG	1 cut(s)	364
BseXI	GCAGC	8 cut(s)	67, 456, 859, 1072, 1088, 1144, 1181, 1423
BsgI	GTGCAG	1 cut(s)	888
Bsh1236I	CGCG	5 cut(s)	25, 95, 97, 99, 617
Bsh1285I	CGRYCG	2 cut(s)	198, 367
BshFI	GGCC	9 cut(s)	17, 108, 138, 165, 356, 366, 375, 491, 1102
BshNI	GGYRCC	2 cut(s)	236, 456
BshTI	ACCGGT	1 cut(s)	1049
BsiEI	CGRYCG	2 cut(s)	198, 367
BsiHKCI	CYCGRG	4 cut(s)	103, 133, 568, 635
BsiSI	CCGG	9 cut(s)	114, 194, 210, 226, 363, 372, 425, 760, 1050
BslFI	GGGAC	2 cut(s)	203, 703
BslI	CCNNNNNNNGG	3 cut(s)	676, 1056, 1562
BsmAI	GTCTC	2 cut(s)	248, 638
BsmFI	GGGAC	2 cut(s)	203, 703
BsmI	GAATGC	2 cut(s)	687, 1039
BsnI	GGCC	9 cut(s)	17, 108, 138, 165, 356, 366, 375, 491, 1102
Bso31I	GGTCTC	2 cut(s)	248, 638
BsoBI	CYCGRG	4 cut(s)	103, 133, 568, 635
Bsp120I	GGGCCC	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	140, 1354
Bsp13I	TCCGGA	1 cut(s)	424
Bsp143I	GATC	5 cut(s)	6, 231, 606, 1327, 1601
Bsp68I	TCGCGA	1 cut(s)	617
BspACI	CCGC	5 cut(s)	40, 55, 223, 367, 452
BspANI	GGCC	9 cut(s)	17, 108, 138, 165, 356, 366, 375, 491, 1102
BspCNI	CTCAG	6 cut(s)	76, 665, 926, 1006, 1378, 1579
BspEI	TCCGGA	1 cut(s)	424
BspFNI	CGCG	5 cut(s)	25, 95, 97, 99, 617
BspHI	TCATGA	1 cut(s)	1224
BspLI	GGNNCC	5 cut(s)	138, 238, 458, 608, 1370
BspMAI	CTGCAG	1 cut(s)	829
BspOI	GCTAGC	1 cut(s)	792
BspPI	GGATC	3 cut(s)	601, 614, 1335
BspT107I	GGYRCC	2 cut(s)	236, 456
BspTNI	GGTCTC	2 cut(s)	248, 638
BsrDI	GCAATG	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	1049
BsrI	ACTGG	2 cut(s)	377, 607
BssAI	RCCGGY	1 cut(s)	1049
BssECI	CCNNGG	4 cut(s)	102, 132, 139, 370
BssHII	GCGCGC	2 cut(s)	95, 97
BssMI	GATC	5 cut(s)	6, 231, 606, 1327, 1601
BssNI	GRCGYC	2 cut(s)	117, 981
BssSI	CACGAG	1 cut(s)	59
Bst2BI	CACGAG	1 cut(s)	59
Bst2UI	CCWGG	4 cut(s)	141, 277, 919, 1497
Bst4CI	ACNGT	2 cut(s)	694, 1110
BstACI	GRCGYC	2 cut(s)	117, 981
BstAPI	GCANNNNNTGC	1 cut(s)	1543
BstC8I	GCNNGC	6 cut(s)	97, 99, 699, 735, 790, 1155
BstDEI	CTNAG	8 cut(s)	84, 154, 652, 798, 913, 993, 1386, 1587
BstEII	GGTNACC	1 cut(s)	271
BstF5I	GGATG	3 cut(s)	36, 234, 1519
BstFNI	CGCG	5 cut(s)	25, 95, 97, 99, 617
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	5 cut(s)	27, 97, 99, 101, 146
BstKTI	GATC	5 cut(s)	9, 234, 609, 1330, 1604
BstMAI	GTCTC	2 cut(s)	248, 638
BstMBI	GATC	5 cut(s)	6, 231, 606, 1327, 1601
BstMCI	CGRYCG	2 cut(s)	198, 367
BstNI	CCWGG	4 cut(s)	141, 277, 919, 1497
BstNSI	RCATGY	2 cut(s)	701, 1541
BstPI	GGTNACC	1 cut(s)	271
BstSCI	CCNGG	7 cut(s)	112, 139, 275, 370, 759, 917, 1495
BstSFI	CTRYAG	1 cut(s)	825
BstSLI	GKGCMC	1 cut(s)	140
BstUI	CGCG	5 cut(s)	25, 95, 97, 99, 617
BstV1I	GCAGC	8 cut(s)	67, 456, 859, 1072, 1088, 1144, 1181, 1423
BstX2I	RGATCY	2 cut(s)	6, 606
BstYI	RGATCY	2 cut(s)	6, 606
BstZI	CGGCCG	1 cut(s)	364
BsuI	GTATCC	2 cut(s)	884, 1422
BsuRI	GGCC	9 cut(s)	17, 108, 138, 165, 356, 366, 375, 491, 1102
BtsCI	GGATG	3 cut(s)	36, 234, 1519
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	5 cut(s)	166, 699, 717, 1001, 1115
BtuMI	TCGCGA	1 cut(s)	617
Cac8I	GCNNGC	6 cut(s)	97, 99, 699, 735, 790, 1155
CciI	TCATGA	1 cut(s)	1224
CfoI	GCGC	5 cut(s)	27, 97, 99, 101, 146
Cfr10I	RCCGGY	1 cut(s)	1049
Cfr13I	GGNCC	8 cut(s)	16, 106, 136, 137, 279, 374, 490, 1499
CseI	GACGC	4 cut(s)	106, 182, 251, 989
CsiI	ACCWGGT	1 cut(s)	275
Csp6I	GTAC	3 cut(s)	237, 457, 1523
CspAI	ACCGGT	1 cut(s)	1049
CviAII	CATG	6 cut(s)	686, 698, 854, 1225, 1538, 1549
CviQI	GTAC	3 cut(s)	237, 457, 1523
DdeI	CTNAG	8 cut(s)	84, 154, 652, 798, 913, 993, 1386, 1587
DpnI	GATC	5 cut(s)	8, 233, 608, 1329, 1603
DpnII	GATC	5 cut(s)	6, 231, 606, 1327, 1601
DraI	TTTAAA	1 cut(s)	1573
EaeI	YGGCCR	2 cut(s)	354, 364
EagI	CGGCCG	1 cut(s)	364
EclXI	CGGCCG	1 cut(s)	364
Eco147I	AGGCCT	1 cut(s)	1102
Eco24I	GRGCYC	2 cut(s)	140, 1354
Eco31I	GGTCTC	2 cut(s)	248, 638
Eco47I	GGWCC	2 cut(s)	279, 1499
Eco52I	CGGCCG	1 cut(s)	364
Eco88I	CYCGRG	4 cut(s)	103, 133, 568, 635
Eco91I	GGTNACC	1 cut(s)	271
EcoO109I	RGGNCCY	2 cut(s)	16, 137
EcoO65I	GGTNACC	1 cut(s)	271
EcoRII	CCWGG	4 cut(s)	139, 275, 917, 1495
EcoT22I	ATGCAT	1 cut(s)	687
EcoT38I	GRGCYC	2 cut(s)	140, 1354
FaeI	CATG	6 cut(s)	689, 701, 857, 1228, 1541, 1552
FalI	AAGNNNNNCTT	3 cut(s)	710, 742, 1591
FaqI	GGGAC	2 cut(s)	203, 703
FatI	CATG	6 cut(s)	685, 697, 853, 1224, 1537, 1548
FauI	CCCGC	3 cut(s)	62, 230, 445
Fnu4HI	GCNGC	9 cut(s)	81, 367, 470, 848, 1061, 1077, 1158, 1170, 1437
FokI	GGATG	3 cut(s)	23, 241, 1526
FriOI	GRGCYC	2 cut(s)	140, 1354
Fsp4HI	GCNGC	9 cut(s)	81, 367, 470, 848, 1061, 1077, 1158, 1170, 1437
FspBI	CTAG	5 cut(s)	327, 465, 648, 789, 1104
GlaI	GCGC	5 cut(s)	26, 96, 98, 100, 145
GluI	GCNGC	9 cut(s)	81, 367, 470, 848, 1061, 1077, 1158, 1170, 1437
GsuI	CTGGAG	1 cut(s)	940
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	9 cut(s)	17, 108, 138, 165, 356, 366, 375, 491, 1102
HapII	CCGG	9 cut(s)	114, 194, 210, 226, 363, 372, 425, 760, 1050
HgaI	GACGC	4 cut(s)	106, 182, 251, 989
HhaI	GCGC	5 cut(s)	27, 97, 99, 101, 146
Hin1I	GRCGYC	2 cut(s)	117, 981
Hin1II	CATG	6 cut(s)	689, 701, 857, 1228, 1541, 1552
Hin6I	GCGC	5 cut(s)	25, 95, 97, 99, 144
HinP1I	GCGC	5 cut(s)	25, 95, 97, 99, 144
HincII	GTYRAC	1 cut(s)	1116
HindII	GTYRAC	1 cut(s)	1116
HindIII	AAGCTT	3 cut(s)	780, 1219, 1419
HinfI	GANTC	5 cut(s)	433, 524, 821, 1382, 1552
HpaII	CCGG	9 cut(s)	114, 194, 210, 226, 363, 372, 425, 760, 1050
HphI	GGTGA	4 cut(s)	199, 989, 1223, 1604
Hpy166II	GTNNAC	3 cut(s)	600, 808, 1116
Hpy188I	TCNGA	6 cut(s)	523, 655, 724, 1387, 1479, 1557
Hpy8I	GTNNAC	3 cut(s)	600, 808, 1116
Hpy99I	CGWCG	2 cut(s)	203, 245
HpyAV	CCTTC	2 cut(s)	119, 1447
HpyCH4III	ACNGT	2 cut(s)	694, 1110
HpyCH4V	TGCA	7 cut(s)	685, 697, 710, 737, 827, 869, 1037
HpyF3I	CTNAG	8 cut(s)	84, 154, 652, 798, 913, 993, 1386, 1587
Hsp92I	GRCGYC	2 cut(s)	117, 981
Hsp92II	CATG	6 cut(s)	689, 701, 857, 1228, 1541, 1552
HspAI	GCGC	5 cut(s)	25, 95, 97, 99, 144
Kpn2I	TCCGGA	1 cut(s)	424
KpnI	GGTACC	2 cut(s)	240, 460
Kzo9I	GATC	5 cut(s)	6, 231, 606, 1327, 1601
LmnI	GCTCC	4 cut(s)	32, 499, 928, 1133
Lsp1109I	GCAGC	8 cut(s)	67, 456, 859, 1072, 1088, 1144, 1181, 1423
LweI	GCATC	3 cut(s)	81, 1072, 1177
MabI	ACCWGGT	1 cut(s)	275
MaeI	CTAG	5 cut(s)	327, 465, 648, 789, 1104
MaeIII	GTNAC	5 cut(s)	271, 663, 763, 977, 1444
MalI	GATC	5 cut(s)	8, 233, 608, 1329, 1603
MauBI	CGCGCGCG	1 cut(s)	95
MboI	GATC	5 cut(s)	6, 231, 606, 1327, 1601
MboII	GAAGA	4 cut(s)	67, 329, 1259, 1611
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	2 cut(s)	6, 606
MhlI	GDGCHC	2 cut(s)	140, 1354
MlsI	TGGCCA	1 cut(s)	356
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	1 cut(s)	1391
MmeI	TCCRAC	1 cut(s)	1491
Mox20I	TGGCCA	1 cut(s)	356
Mph1103I	ATGCAT	1 cut(s)	687
MroI	TCCGGA	1 cut(s)	424
MroXI	GAANNNNTTC	2 cut(s)	321, 1266
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	6 cut(s)	959, 1022, 1275, 1376, 1464, 1572
Msp20I	TGGCCA	1 cut(s)	356
MspA1I	CMGCKG	2 cut(s)	1172, 1436
MspI	CCGG	9 cut(s)	114, 194, 210, 226, 363, 372, 425, 760, 1050
MspR9I	CCNGG	7 cut(s)	114, 141, 277, 372, 761, 919, 1497
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	2 cut(s)	687, 1039
MvaI	CCWGG	4 cut(s)	141, 277, 919, 1497
MvnI	CGCG	5 cut(s)	25, 95, 97, 99, 617
NciI	CCSGG	3 cut(s)	114, 372, 761
NdeII	GATC	5 cut(s)	6, 231, 606, 1327, 1601
NheI	GCTAGC	1 cut(s)	788
NlaIII	CATG	6 cut(s)	689, 701, 857, 1228, 1541, 1552
NlaIV	GGNNCC	5 cut(s)	138, 238, 458, 608, 1370
NmeAIII	GCCGAG	1 cut(s)	818
NmuCI	GTSAC	3 cut(s)	663, 977, 1444
NruI	TCGCGA	1 cut(s)	617
NsiI	ATGCAT	1 cut(s)	687
NspI	RCATGY	2 cut(s)	701, 1541
PaeI	GCATGC	1 cut(s)	701
PaeR7I	CTCGAG	1 cut(s)	568
PagI	TCATGA	1 cut(s)	1224
PauI	GCGCGC	2 cut(s)	95, 97
PceI	AGGCCT	1 cut(s)	1102
PctI	GAATGC	2 cut(s)	687, 1039
PdmI	GAANNNNTTC	2 cut(s)	321, 1266
PfeI	GAWTC	4 cut(s)	433, 524, 821, 1552
PflMI	CCANNNNNTGG	1 cut(s)	676
PinAI	ACCGGT	1 cut(s)	1049
PkrI	GCNGC	9 cut(s)	82, 368, 471, 849, 1062, 1078, 1159, 1171, 1438
PleI	GAGTC	1 cut(s)	1390
PpsI	GAGTC	1 cut(s)	1390
PsiI	TTATAA	1 cut(s)	966
Psp6I	CCWGG	4 cut(s)	139, 275, 917, 1495
PspEI	GGTNACC	1 cut(s)	271
PspGI	CCWGG	4 cut(s)	139, 275, 917, 1495
PspN4I	GGNNCC	5 cut(s)	138, 238, 458, 608, 1370
PspOMI	GGGCCC	1 cut(s)	136
PspPI	GGNCC	8 cut(s)	16, 106, 136, 137, 279, 374, 490, 1499
PspXI	VCTCGAGB	1 cut(s)	568
PstI	CTGCAG	1 cut(s)	829
PsuI	RGATCY	2 cut(s)	6, 606
PteI	GCGCGC	2 cut(s)	95, 97
PvuII	CAGCTG	2 cut(s)	1172, 1436
RruI	TCGCGA	1 cut(s)	617
RsaI	GTAC	3 cut(s)	238, 458, 1524
RsaNI	GTAC	3 cut(s)	237, 457, 1523
SaqAI	TTAA	6 cut(s)	959, 1022, 1275, 1376, 1464, 1572
SatI	GCNGC	9 cut(s)	81, 367, 470, 848, 1061, 1077, 1158, 1170, 1437
Sau3AI	GATC	5 cut(s)	6, 231, 606, 1327, 1601
Sau96I	GGNCC	8 cut(s)	16, 106, 136, 137, 279, 374, 490, 1499
SchI	GAGTC	1 cut(s)	1391
ScrFI	CCNGG	7 cut(s)	114, 141, 277, 372, 761, 919, 1497
SduI	GDGCHC	2 cut(s)	140, 1354
SexAI	ACCWGGT	1 cut(s)	275
SfaNI	GCATC	3 cut(s)	81, 1072, 1177
SfcI	CTRYAG	1 cut(s)	825
SfiI	GGCCNNNNNGGCC	1 cut(s)	372
Sfr274I	CTCGAG	1 cut(s)	568
SgrAI	CRCCGGYG	1 cut(s)	1049
SinI	GGWCC	2 cut(s)	279, 1499
SlaI	CTCGAG	1 cut(s)	568
SmlI	CTYRAG	2 cut(s)	568, 1406
SmoI	CTYRAG	2 cut(s)	568, 1406
SphI	GCATGC	1 cut(s)	701
SseBI	AGGCCT	1 cut(s)	1102
SsiI	CCGC	5 cut(s)	40, 55, 223, 367, 452
SspMI	CTAG	5 cut(s)	327, 465, 648, 789, 1104
StuI	AGGCCT	1 cut(s)	1102
StyD4I	CCNGG	7 cut(s)	112, 139, 275, 370, 759, 917, 1495
TaaI	ACNGT	2 cut(s)	694, 1110
TaqI	TCGA	2 cut(s)	569, 777
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	4 cut(s)	433, 524, 821, 1552
Tru1I	TTAA	6 cut(s)	959, 1022, 1275, 1376, 1464, 1572
Tru9I	TTAA	6 cut(s)	959, 1022, 1275, 1376, 1464, 1572
TscAI	CASTG	5 cut(s)	166, 699, 717, 1001, 1115
TseFI	GTSAC	3 cut(s)	663, 977, 1444
TseI	GCWGC	8 cut(s)	80, 469, 847, 1060, 1076, 1157, 1169, 1436
Tsp45I	GTSAC	3 cut(s)	663, 977, 1444
TspDTI	ATGAA	3 cut(s)	1032, 1213, 1244
TspRI	CASTG	5 cut(s)	166, 699, 717, 1001, 1115
Van91I	CCANNNNNTGG	1 cut(s)	676
VpaK11BI	GGWCC	2 cut(s)	279, 1499
XapI	RAATTY	1 cut(s)	321
XceI	RCATGY	2 cut(s)	701, 1541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XhoI	CTCGAG	1 cut(s)	568
XmnI	GAANNNNTTC	2 cut(s)	321, 1266
XspI	CTAG	5 cut(s)	327, 465, 648, 789, 1104
Zsp2I	ATGCAT	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.