Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006113

Physical Location & Seq

Genomic Coordinates Forward (+)

24762937 .. 24765063

Gene Structure 2127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG255600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1845 bp

ATGGCGACCATAGCTCCACCCTCTTCCTCCTTCTCCAAACCCTCTCTTCCCACCAAATCCCCAAACCCACTTTCCCGATTTGCCCTCCCCTACTTCCCTTACCCCAACAAGCACACACCCTTCCGCCCTCTCCACATCTCCAACTCTCTCACCCCCAAAGCCACCACCACACCTGTCACCGCCACCACAACAATCACCGCTGCTCCTCCAGACCCAGCAACTCCAATTCCCCGATTTGCCCCTGACGAGCCCAGAAAAGGCGCCGATGTCCTCGTGGAGGCCCTCGAGCGCCAGGGCGTCACCACTATCTTCGCCTACCCCGGCGGCGCGTCGATGGAGATCCACCAGGCCCTCACGCGCTCCACCACCATCCGCAACGTCCTCCCCCGCCACGAGCAGGGCGGCGTCTTCGCCGCCGAGGGCTATGCGCGCGCGTCGGGCCTTCCGGGCGTATGCATTGCCACCTCCGGCCCCGGCGCGACCAATCTGGTCAGCGGGCTTGCCGACGCGCTCATGGACAGCATTCCGATGGTGGCAATCACCGGACAAGTGCCCCGCCGGATGATCGGAACTGATGCTTTTCAGGAGACGCCGATTGTTGAGCAACAGCTTGTGGTTCCGGATTGGGACCAACCCATTAGGTTAACTGGTTACATGTCTAGGTTGCCCAAAAGCCCCAGTGAGGTACATCTGGAGCAGATTGTGAGGTTGGTGTCGGAGTCGAAGAAACCGGTGTTGTATGTTGGTGGAGGGTGTTTGAACTCGAGTGAGGAGTTGAGGCGGTTCGTGGAGCTTACTGGGATCCCAGTTACTAGTACTTTGATGGGTCTTGGGACTTACCCGAGCTCCGACGAAGATGACTTGTCACTGCAGATGCTTGGGATGCATGGAACTGTTTATGCTAACTATGCTGTGGACAAGGCTGACTTGTTGCTGGCTTTTGGTGTGAGGTTTGATGATCGTGTGACTGGGAAGCTGGAGGCATTTGCTAGCCGGGCTAAGATTGTGCACATTGATATTGATTCTGCAGAGATTGGGAAGAACAAGCAGCCTCATGTGTCTATTTGTGGTGATGTGAAACCAGCGTTGCAAGGGTTGAACAGGATATTGGAGGGGAAATTGGAGAAGCTCAAGCTTGATTTTTCAGCTTGGAGGGCGGAGCTGAAAGAGCAGAAATTGAAGTTTCCATTGGGTTACAAGACTTTTGGGGAGGCCATCCCTCCTCAGTATGCCATTCAGGTTCTTGATGAGTTAACTGAAGGGAAGGCTATTATAAGCACTGGTGTTGGGCAACATCAGATGTGGGCGGCTCAACATTACAAGTATCTTAGGCCCCGACAGTGGTTGACTTCGGGGGGTTTAGGAGCCATGGGTTTTGGATTGCCAGCTGCTATGGGGGCTGCGGCAGCAAATCCAGGTGCTATTGTTGTCGACATTGATGGTGATGGAAGTTTTATGATGAATGTCCAAGAATTGGCAACAATCAAGGTGGAGAATCTTCCTGTCAAAATTCTGCTGTTGAACAATCAACATTTGGGTATGGTTGTTCAGTGGGAGGATCGCTTCTATAAGGCAAACAGGGCTCACACATACTTGGGCAACCCAGCAAATGAGTCTGAGATCTTCCCAAATATGCTAAAGTTCGCAGAAGCTTGTGGGGTACCAGCTGCCCGTGTGACGAAGAAGGAAGACCTCAAAGCGGCAATCCAGAAAATGTTGGATACTCCTGGGCCATACTTGTTGGACGTTATTGTACCACATCAAGAGCATGTGTTGCCTATGATCCCAAGCGGTGGTGCTTTCAAAGATGTGATAACTGAGGGTGATGGAAGAAGAAGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009099 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

614

Amino Acids

66.53

Weight (kDa)

6.72

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPP_enzyme_N	PF02776	86 - 197	5.6e-37	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_M	PF00205	231 - 366	5.4e-45	Thiamine pyrophosphate enzyme, central domain
TPP_enzyme_C	PF02775	428 - 583	3.2e-51	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48560
fragaria_vesca	FvH4_7g06770
malus_domestica	MD06G1028700.v1.1 MD10G1013700.v1.1
prunus_persica	Prupe.5G043100_v2.0.a1 Prupe.8G001300_v2.0.a1 Prupe.8G001300_v2.0.a1
pyrus_communis	pycom06g02280 pycom10g00840
rosa_chinensis	RchiOBHm_Chr7g0208791
rosa_laevigata	RLG00000003195 RLG00000015583
rosa_multiflora	Rmu_co8493263.1_g000001 Rmu_sc0000278.1_g000002 Rmu_sc0008663.1_g000001 Rmu_sc0018750.1_g000002
rosa_roxburghii	Rroxscaffold_3G00250260 Rroxscaffold_7G00217760
rosa_rugosa	Rorug05G0492000 Rorug07G0105800
rosa_samantha	Rh6AG001800 Rh7AG241000 Rh7BG235900 Rh7CG255600 Rh7DG247000
rosa_wichuraiana	Rw6G000240 Rw7G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1274
Acc65I	GGTACC	1 cut(s)	1660
AccB1I	GGYRCC	2 cut(s)	260, 1660
AccB7I	CCANNNNNTGG	2 cut(s)	1474, 1793
AccI	GTMKAC	1 cut(s)	1431
AccII	CGCG	7 cut(s)	329, 358, 430, 432, 434, 479, 509
AccIII	TCCGGA	1 cut(s)	619
AclWI	GGATC	5 cut(s)	334, 796, 809, 1566, 1777
AcsI	RAATTY	1 cut(s)	1509
AcuI	CTGAAG	1 cut(s)	1278
AcyI	GRCGYC	4 cut(s)	261, 297, 405, 590
AfaI	GTAC	4 cut(s)	687, 817, 1662, 1755
AfiI	CCNNNNNNNGG	8 cut(s)	257, 277, 397, 682, 1341, 1474, 1699, 1793
AflIII	ACRYGT	1 cut(s)	654
AgeI	ACCGGT	1 cut(s)	730
AgsI	TTSAA	5 cut(s)	760, 1099, 1180, 1522, 1804
AhlI	ACTAGT	1 cut(s)	812
AjnI	CCWGG	4 cut(s)	291, 345, 1414, 1726
AjuI	GAANNNNNNNTTGG	6 cut(s)	55, 87, 1091, 1123, 1172, 1204
Alw21I	GWGCWC	2 cut(s)	848, 1011
Alw26I	GTCTC	1 cut(s)	581
Alw44I	GTGCAC	1 cut(s)	1007
AlwI	GGATC	5 cut(s)	334, 796, 809, 1566, 1777
Ama87I	CYCGRG	3 cut(s)	284, 763, 841
Aor13HI	TCCGGA	1 cut(s)	619
AoxI	GGCC	7 cut(s)	279, 348, 439, 469, 1212, 1331, 1730
ApaLI	GTGCAC	1 cut(s)	1007
ApeKI	GCWGC	6 cut(s)	200, 1048, 1388, 1400, 1406, 1667
ApoI	RAATTY	1 cut(s)	1509
AsiGI	ACCGGT	1 cut(s)	730
Asp718I	GGTACC	1 cut(s)	1660
AspLEI	GCGC	9 cut(s)	263, 291, 329, 360, 430, 432, 434, 479, 511
AspS9I	GGNCC	7 cut(s)	280, 349, 439, 470, 628, 1332, 1730
AsuC2I	CCSGG	4 cut(s)	321, 447, 474, 995
AsuHPI	GGTGA	8 cut(s)	142, 169, 187, 292, 532, 1082, 1454, 1835
AsuNHI	GCTAGC	1 cut(s)	989
AvaI	CYCGRG	3 cut(s)	284, 763, 841
AvaII	GGWCC	1 cut(s)	628
BaeGI	GKGCMC	2 cut(s)	555, 1011
BamHI	GGATCC	1 cut(s)	801
BanI	GGYRCC	2 cut(s)	260, 1660
BanII	GRGCYC	3 cut(s)	252, 848, 1585
BauI	CACGAG	2 cut(s)	272, 392
BbsI	GAAGAC	2 cut(s)	400, 1695
Bbv12I	GWGCWC	2 cut(s)	848, 1011
BbvI	GCAGC	6 cut(s)	187, 1060, 1375, 1387, 1418, 1654
BccI	CCATC	8 cut(s)	328, 377, 523, 817, 1223, 1433, 1439, 1820
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	4 cut(s)	293, 347, 1416, 1728
BciVI	GTATCC	1 cut(s)	1714
BcnI	CCSGG	4 cut(s)	321, 447, 474, 995
BcoDI	GTCTC	1 cut(s)	581
BcuI	ACTAGT	1 cut(s)	812
BfaI	CTAG	3 cut(s)	660, 813, 990
BfmI	CTRYAG	2 cut(s)	869, 1026
BfoI	RGCGCY	2 cut(s)	264, 292
BfuI	GTATCC	1 cut(s)	1714
BglI	GCCNNNNNGGC	1 cut(s)	447
BglII	AGATCT	1 cut(s)	1620
BmcAI	AGTACT	1 cut(s)	817
Bme1390I	CCNGG	8 cut(s)	293, 321, 347, 447, 474, 995, 1416, 1728
Bme18I	GGWCC	1 cut(s)	628
BmeT110I	CYCGRG	3 cut(s)	284, 763, 841
BmgT120I	GGNCC	7 cut(s)	280, 349, 439, 470, 628, 1332, 1730
BmiI	GGNNCC	8 cut(s)	262, 472, 618, 629, 803, 1334, 1366, 1662
BmrFI	CCNGG	8 cut(s)	293, 321, 347, 447, 474, 995, 1416, 1728
BmrI	ACTGGG	4 cut(s)	672, 800, 807, 978
BmsI	GCATC	3 cut(s)	565, 864, 873
BmtI	GCTAGC	1 cut(s)	993
BmuI	ACTGGG	4 cut(s)	672, 800, 807, 978
BpiI	GAAGAC	2 cut(s)	400, 1695
BpmI	CTGGAG	3 cut(s)	192, 713, 998
BpuEI	CTTGAG	1 cut(s)	1115
BpuMI	CCSGG	4 cut(s)	321, 447, 474, 995
BsaBI	GATNNNNATC	1 cut(s)	338
BsaHI	GRCGYC	4 cut(s)	261, 297, 405, 590
BsaJI	CCNNGG	6 cut(s)	292, 319, 417, 472, 1368, 1727
BsaWI	WCCGGW	3 cut(s)	542, 619, 730
BsaXI	ACNNNNNCTCC	5 cut(s)	28, 187, 217, 830, 860
Bsc4I	CCNNNNNNNGG	8 cut(s)	257, 277, 397, 682, 1341, 1474, 1699, 1793
Bse118I	RCCGGY	1 cut(s)	730
Bse1I	ACTGG	6 cut(s)	652, 678, 802, 806, 973, 1285
Bse3DI	GCAATG	1 cut(s)	456
Bse8I	GATNNNNATC	1 cut(s)	338
BseAI	TCCGGA	1 cut(s)	619
BseBI	CCWGG	4 cut(s)	293, 347, 1416, 1728
BseDI	CCNNGG	6 cut(s)	292, 319, 417, 472, 1368, 1727
BseGI	GGATG	4 cut(s)	369, 567, 888, 1215
BseJI	GATNNNNATC	1 cut(s)	338
BseLI	CCNNNNNNNGG	8 cut(s)	257, 277, 397, 682, 1341, 1474, 1699, 1793
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	3 cut(s)	1238, 1608, 1809
BseNI	ACTGG	6 cut(s)	652, 678, 802, 806, 973, 1285
BsePI	GCGCGC	2 cut(s)	428, 430
BseRI	GAGGAG	3 cut(s)	195, 785, 1212
BseSI	GKGCMC	2 cut(s)	555, 1011
BseXI	GCAGC	6 cut(s)	187, 1060, 1375, 1387, 1418, 1654
BseYI	CCCAGC	2 cut(s)	214, 1603
Bsh1236I	CGCG	7 cut(s)	329, 358, 430, 432, 434, 479, 509
BshFI	GGCC	7 cut(s)	281, 350, 441, 471, 1214, 1333, 1732
BshNI	GGYRCC	2 cut(s)	260, 1660
BshTI	ACCGGT	1 cut(s)	730
BsiHKAI	GWGCWC	2 cut(s)	848, 1011
BsiHKCI	CYCGRG	3 cut(s)	284, 763, 841
BsiSI	CCGG	9 cut(s)	321, 446, 468, 474, 543, 559, 620, 731, 994
BslFI	GGGAC	2 cut(s)	641, 847
BslI	CCNNNNNNNGG	8 cut(s)	257, 277, 397, 682, 1341, 1474, 1699, 1793
BsmAI	GTCTC	1 cut(s)	581
BsmBI	CGTCTC	1 cut(s)	581
BsmFI	GGGAC	2 cut(s)	641, 847
BsmI	GAATGC	1 cut(s)	522
BsnI	GGCC	7 cut(s)	281, 350, 441, 471, 1214, 1333, 1732
BsoBI	CYCGRG	3 cut(s)	284, 763, 841
Bsp1286I	GDGCHC	5 cut(s)	252, 555, 848, 1011, 1585
Bsp13I	TCCGGA	1 cut(s)	619
Bsp143I	GATC	7 cut(s)	339, 564, 801, 958, 1558, 1620, 1782
Bsp19I	CCATGG	1 cut(s)	1368
BspANI	GGCC	7 cut(s)	281, 350, 441, 471, 1214, 1333, 1732
BspCNI	CTCAG	3 cut(s)	1237, 1609, 1810
BspEI	TCCGGA	1 cut(s)	619
BspFNI	CGCG	7 cut(s)	329, 358, 430, 432, 434, 479, 509
BspLI	GGNNCC	8 cut(s)	262, 472, 618, 629, 803, 1334, 1366, 1662
BspMAI	CTGCAG	2 cut(s)	873, 1030
BspOI	GCTAGC	1 cut(s)	993
BspPI	GGATC	5 cut(s)	334, 796, 809, 1566, 1777
BspT107I	GGYRCC	2 cut(s)	260, 1660
BsrDI	GCAATG	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	730
BsrI	ACTGG	6 cut(s)	652, 678, 802, 806, 973, 1285
BssAI	RCCGGY	1 cut(s)	730
BssECI	CCNNGG	6 cut(s)	292, 319, 417, 472, 1368, 1727
BssHII	GCGCGC	2 cut(s)	428, 430
BssMI	GATC	7 cut(s)	339, 564, 801, 958, 1558, 1620, 1782
BssNI	GRCGYC	4 cut(s)	261, 297, 405, 590
BssSI	CACGAG	2 cut(s)	272, 392
BssT1I	CCWWGG	1 cut(s)	1368
Bst2BI	CACGAG	2 cut(s)	272, 392
Bst2UI	CCWGG	4 cut(s)	293, 347, 1416, 1728
Bst4CI	ACNGT	2 cut(s)	895, 1341
Bst6I	CTCTTC	2 cut(s)	28, 51
BstACI	GRCGYC	4 cut(s)	261, 297, 405, 590
BstAPI	GCANNNNNTGC	1 cut(s)	1774
BstC8I	GCNNGC	7 cut(s)	430, 432, 497, 501, 936, 991, 1386
BstDEI	CTNAG	5 cut(s)	999, 1224, 1328, 1617, 1818
BstDSI	CCRYGG	1 cut(s)	1368
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstF5I	GGATG	4 cut(s)	369, 567, 888, 1215
BstFNI	CGCG	7 cut(s)	329, 358, 430, 432, 434, 479, 509
BstH2I	RGCGCY	2 cut(s)	264, 292
BstHHI	GCGC	9 cut(s)	263, 291, 329, 360, 430, 432, 434, 479, 511
BstKTI	GATC	7 cut(s)	342, 567, 804, 961, 1561, 1623, 1785
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	7 cut(s)	339, 564, 801, 958, 1558, 1620, 1782
BstNI	CCWGG	4 cut(s)	293, 347, 1416, 1728
BstNSI	RCATGY	2 cut(s)	658, 1772
BstSCI	CCNGG	8 cut(s)	291, 319, 345, 445, 472, 993, 1414, 1726
BstSFI	CTRYAG	2 cut(s)	869, 1026
BstSLI	GKGCMC	2 cut(s)	555, 1011
BstUI	CGCG	7 cut(s)	329, 358, 430, 432, 434, 479, 509
BstV1I	GCAGC	6 cut(s)	187, 1060, 1375, 1387, 1418, 1654
BstV2I	GAAGAC	2 cut(s)	400, 1695
BstX2I	RGATCY	3 cut(s)	339, 801, 1620
BstYI	RGATCY	3 cut(s)	339, 801, 1620
BsuI	GTATCC	1 cut(s)	1714
BsuRI	GGCC	7 cut(s)	281, 350, 441, 471, 1214, 1333, 1732
BtgI	CCRYGG	1 cut(s)	1368
BtsCI	GGATG	4 cut(s)	369, 567, 888, 1215
BtsI	GCAGTG	1 cut(s)	866
BtsIMutI	CAGTG	5 cut(s)	685, 866, 1278, 1346, 1556
Cac8I	GCNNGC	7 cut(s)	430, 432, 497, 501, 936, 991, 1386
CfoI	GCGC	9 cut(s)	263, 291, 329, 360, 430, 432, 434, 479, 511
Cfr10I	RCCGGY	1 cut(s)	730
Cfr13I	GGNCC	7 cut(s)	280, 349, 439, 470, 628, 1332, 1730
CseI	GACGC	6 cut(s)	286, 318, 394, 423, 515, 598
Csp6I	GTAC	4 cut(s)	686, 816, 1661, 1754
CspAI	ACCGGT	1 cut(s)	730
CspCI	CAANNNNNGTGG	2 cut(s)	1470, 1505
CviAII	CATG	6 cut(s)	514, 655, 887, 1055, 1369, 1769
CviQI	GTAC	4 cut(s)	686, 816, 1661, 1754
DdeI	CTNAG	5 cut(s)	999, 1224, 1328, 1617, 1818
DinI	GGCGCC	1 cut(s)	262
DpnI	GATC	7 cut(s)	341, 566, 803, 960, 1560, 1622, 1784
DpnII	GATC	7 cut(s)	339, 564, 801, 958, 1558, 1620, 1782
Eam1104I	CTCTTC	2 cut(s)	28, 51
EarI	CTCTTC	2 cut(s)	28, 51
EciI	GGCGGA	2 cut(s)	113, 1172
Ecl136II	GAGCTC	1 cut(s)	846
Eco130I	CCWWGG	1 cut(s)	1368
Eco24I	GRGCYC	3 cut(s)	252, 848, 1585
Eco47I	GGWCC	1 cut(s)	628
Eco53kI	GAGCTC	1 cut(s)	846
Eco57I	CTGAAG	1 cut(s)	1278
Eco88I	CYCGRG	3 cut(s)	284, 763, 841
EcoICRI	GAGCTC	1 cut(s)	846
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoO109I	RGGNCCY	3 cut(s)	280, 349, 1332
EcoRII	CCWGG	4 cut(s)	291, 345, 1414, 1726
EcoT14I	CCWWGG	1 cut(s)	1368
EcoT22I	ATGCAT	2 cut(s)	458, 888
EcoT38I	GRGCYC	3 cut(s)	252, 848, 1585
EgeI	GGCGCC	1 cut(s)	262
EheI	GGCGCC	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	1368
Esp3I	CGTCTC	1 cut(s)	581
FaeI	CATG	6 cut(s)	517, 658, 890, 1058, 1372, 1772
FalI	AAGNNNNNCTT	2 cut(s)	911, 943
FaqI	GGGAC	2 cut(s)	641, 847
FatI	CATG	6 cut(s)	513, 654, 886, 1054, 1368, 1768
FauI	CCCGC	3 cut(s)	395, 488, 563
FblI	GTMKAC	1 cut(s)	1431
FokI	GGATG	4 cut(s)	356, 574, 895, 1202
FriOI	GRGCYC	3 cut(s)	252, 848, 1585
FspBI	CTAG	3 cut(s)	660, 813, 990
GlaI	GCGC	9 cut(s)	262, 290, 328, 359, 429, 431, 433, 478, 510
GsaI	CCCAGC	2 cut(s)	218, 1607
GsuI	CTGGAG	3 cut(s)	192, 713, 998
HaeII	RGCGCY	2 cut(s)	264, 292
HaeIII	GGCC	7 cut(s)	281, 350, 441, 471, 1214, 1333, 1732
HapII	CCGG	9 cut(s)	321, 446, 468, 474, 543, 559, 620, 731, 994
HgaI	GACGC	6 cut(s)	286, 318, 394, 423, 515, 598
HhaI	GCGC	9 cut(s)	263, 291, 329, 360, 430, 432, 434, 479, 511
Hin1I	GRCGYC	4 cut(s)	261, 297, 405, 590
Hin1II	CATG	6 cut(s)	517, 658, 890, 1058, 1372, 1772
Hin6I	GCGC	9 cut(s)	261, 289, 327, 358, 428, 430, 432, 477, 509
HinP1I	GCGC	9 cut(s)	261, 289, 327, 358, 428, 430, 432, 477, 509
HincII	GTYRAC	4 cut(s)	645, 1254, 1347, 1432
HindII	GTYRAC	4 cut(s)	645, 1254, 1347, 1432
HindIII	AAGCTT	2 cut(s)	1133, 1650
HinfI	GANTC	4 cut(s)	719, 1022, 1495, 1613
HpaI	GTTAAC	2 cut(s)	645, 1254
HpaII	CCGG	9 cut(s)	321, 446, 468, 474, 543, 559, 620, 731, 994
HphI	GGTGA	8 cut(s)	142, 169, 187, 292, 532, 1082, 1454, 1835
Hpy166II	GTNNAC	6 cut(s)	645, 916, 1009, 1254, 1347, 1432
Hpy188I	TCNGA	6 cut(s)	528, 569, 718, 850, 1299, 1618
Hpy188III	TCNNGA	8 cut(s)	75, 209, 584, 620, 692, 1244, 1708, 1763
Hpy8I	GTNNAC	6 cut(s)	645, 916, 1009, 1254, 1347, 1432
Hpy99I	CGWCG	4 cut(s)	334, 439, 509, 854
HpyAV	CCTTC	6 cut(s)	40, 130, 452, 1253, 1258, 1678
HpyCH4III	ACNGT	2 cut(s)	895, 1341
HpyCH4IV	ACGT	2 cut(s)	378, 1746
HpyCH4V	TGCA	6 cut(s)	456, 871, 886, 1009, 1028, 1090
HpyF3I	CTNAG	5 cut(s)	999, 1224, 1328, 1617, 1818
HpySE526I	ACGT	2 cut(s)	378, 1746
Hsp92I	GRCGYC	4 cut(s)	261, 297, 405, 590
Hsp92II	CATG	6 cut(s)	517, 658, 890, 1058, 1372, 1772
HspAI	GCGC	9 cut(s)	261, 289, 327, 358, 428, 430, 432, 477, 509
KasI	GGCGCC	1 cut(s)	260
Kpn2I	TCCGGA	1 cut(s)	619
KpnI	GGTACC	1 cut(s)	1664
KspAI	GTTAAC	2 cut(s)	645, 1254
Kzo9I	GATC	7 cut(s)	339, 564, 801, 958, 1558, 1620, 1782
LmnI	GCTCC	8 cut(s)	19, 208, 365, 694, 790, 851, 1159, 1364
Lsp1109I	GCAGC	6 cut(s)	187, 1060, 1375, 1387, 1418, 1654
LweI	GCATC	3 cut(s)	565, 864, 873
MaeI	CTAG	3 cut(s)	660, 813, 990
MaeII	ACGT	2 cut(s)	378, 1746
MaeIII	GTNAC	9 cut(s)	175, 298, 650, 808, 864, 964, 1193, 1675, 1838
MalI	GATC	7 cut(s)	341, 566, 803, 960, 1560, 1622, 1784
MauBI	CGCGCGCG	1 cut(s)	430
MboI	GATC	7 cut(s)	339, 564, 801, 958, 1558, 1620, 1782
MflI	RGATCY	3 cut(s)	339, 801, 1620
MhlI	GDGCHC	5 cut(s)	252, 555, 848, 1011, 1585
MluCI	AATT	5 cut(s)	225, 1118, 1175, 1472, 1509
Mly113I	GGCGCC	1 cut(s)	261
MlyI	GAGTC	2 cut(s)	728, 1622
MmeI	TCCRAC	5 cut(s)	165, 696, 873, 1698, 1722
Mph1103I	ATGCAT	2 cut(s)	458, 888
MroI	TCCGGA	1 cut(s)	619
MseI	TTAA	2 cut(s)	644, 1253
MslI	CAYNNNNRTG	1 cut(s)	527
MspA1I	CMGCKG	4 cut(s)	200, 495, 1388, 1667
MspI	CCGG	9 cut(s)	321, 446, 468, 474, 543, 559, 620, 731, 994
MspR9I	CCNGG	8 cut(s)	293, 321, 347, 447, 474, 995, 1416, 1728
Mva1269I	GAATGC	1 cut(s)	522
MvaI	CCWGG	4 cut(s)	293, 347, 1416, 1728
MvnI	CGCG	7 cut(s)	329, 358, 430, 432, 434, 479, 509
NarI	GGCGCC	1 cut(s)	261
NciI	CCSGG	4 cut(s)	321, 447, 474, 995
NcoI	CCATGG	1 cut(s)	1368
NdeII	GATC	7 cut(s)	339, 564, 801, 958, 1558, 1620, 1782
NheI	GCTAGC	1 cut(s)	989
NlaIII	CATG	6 cut(s)	517, 658, 890, 1058, 1372, 1772
NlaIV	GGNNCC	8 cut(s)	262, 472, 618, 629, 803, 1334, 1366, 1662
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	5 cut(s)	175, 298, 864, 964, 1675
NsiI	ATGCAT	2 cut(s)	458, 888
NspI	RCATGY	2 cut(s)	658, 1772
PaeR7I	CTCGAG	2 cut(s)	284, 763
PauI	GCGCGC	2 cut(s)	428, 430
PciI	ACATGT	1 cut(s)	654
PctI	GAATGC	1 cut(s)	522
PfeI	GAWTC	2 cut(s)	1022, 1495
PflMI	CCANNNNNTGG	2 cut(s)	1474, 1793
PinAI	ACCGGT	1 cut(s)	730
PleI	GAGTC	2 cut(s)	727, 1621
PluTI	GGCGCC	1 cut(s)	264
PpsI	GAGTC	2 cut(s)	727, 1621
PscI	ACATGT	1 cut(s)	654
PsiI	TTATAA	1 cut(s)	1274
Psp124BI	GAGCTC	1 cut(s)	848
Psp6I	CCWGG	4 cut(s)	291, 345, 1414, 1726
PspFI	CCCAGC	2 cut(s)	214, 1603
PspGI	CCWGG	4 cut(s)	291, 345, 1414, 1726
PspN4I	GGNNCC	8 cut(s)	262, 472, 618, 629, 803, 1334, 1366, 1662
PspPI	GGNCC	7 cut(s)	280, 349, 439, 470, 628, 1332, 1730
PspXI	VCTCGAGB	2 cut(s)	284, 763
PstI	CTGCAG	2 cut(s)	873, 1030
PsuI	RGATCY	3 cut(s)	339, 801, 1620
PteI	GCGCGC	2 cut(s)	428, 430
PvuII	CAGCTG	2 cut(s)	1388, 1667
RsaI	GTAC	4 cut(s)	687, 817, 1662, 1755
RsaNI	GTAC	4 cut(s)	686, 816, 1661, 1754
RseI	CAYNNNNRTG	1 cut(s)	527
SacI	GAGCTC	1 cut(s)	848
SalI	GTCGAC	1 cut(s)	1430
SaqAI	TTAA	2 cut(s)	644, 1253
Sau3AI	GATC	7 cut(s)	339, 564, 801, 958, 1558, 1620, 1782
Sau96I	GGNCC	7 cut(s)	280, 349, 439, 470, 628, 1332, 1730
ScaI	AGTACT	1 cut(s)	817
SchI	GAGTC	2 cut(s)	728, 1622
ScrFI	CCNGG	8 cut(s)	293, 321, 347, 447, 474, 995, 1416, 1728
SduI	GDGCHC	5 cut(s)	252, 555, 848, 1011, 1585
SfaNI	GCATC	3 cut(s)	565, 864, 873
SfcI	CTRYAG	2 cut(s)	869, 1026
SfoI	GGCGCC	1 cut(s)	262
Sfr274I	CTCGAG	2 cut(s)	284, 763
SinI	GGWCC	1 cut(s)	628
SlaI	CTCGAG	2 cut(s)	284, 763
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	3 cut(s)	284, 763, 1130
SmoI	CTYRAG	3 cut(s)	284, 763, 1130
SpeI	ACTAGT	1 cut(s)	812
Sse9I	AATT	5 cut(s)	225, 1118, 1175, 1472, 1509
SspDI	GGCGCC	1 cut(s)	260
SspMI	CTAG	3 cut(s)	660, 813, 990
SstI	GAGCTC	1 cut(s)	848
StyD4I	CCNGG	8 cut(s)	291, 319, 345, 445, 472, 993, 1414, 1726
StyI	CCWWGG	1 cut(s)	1368
TaaI	ACNGT	2 cut(s)	895, 1341
TaiI	ACGT	2 cut(s)	381, 1749
TaqI	TCGA	5 cut(s)	285, 332, 722, 764, 1431
TasI	AATT	5 cut(s)	225, 1118, 1175, 1472, 1509
TatI	WGTACW	1 cut(s)	815
TauI	GCSGC	6 cut(s)	327, 405, 416, 1310, 1406, 1703
TfiI	GAWTC	2 cut(s)	1022, 1495
Tru1I	TTAA	2 cut(s)	644, 1253
Tru9I	TTAA	2 cut(s)	644, 1253
TscAI	CASTG	5 cut(s)	685, 873, 1285, 1346, 1556
TseFI	GTSAC	5 cut(s)	175, 298, 864, 964, 1675
TseI	GCWGC	6 cut(s)	200, 1048, 1388, 1400, 1406, 1667
Tsp45I	GTSAC	5 cut(s)	175, 298, 864, 964, 1675
TspDTI	ATGAA	1 cut(s)	1475
TspRI	CASTG	5 cut(s)	685, 873, 1285, 1346, 1556
Van91I	CCANNNNNTGG	2 cut(s)	1474, 1793
VneI	GTGCAC	1 cut(s)	1007
VpaK11BI	GGWCC	1 cut(s)	628
XagI	CCTNNNNNAGG	1 cut(s)	275
XapI	RAATTY	1 cut(s)	1509
XceI	RCATGY	2 cut(s)	658, 1772
XhoI	CTCGAG	2 cut(s)	284, 763
XmiI	GTMKAC	1 cut(s)	1431
XspI	CTAG	3 cut(s)	660, 813, 990
ZrmI	AGTACT	1 cut(s)	817
Zsp2I	ATGCAT	2 cut(s)	458, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.