Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006113

Physical Location & Seq

Genomic Coordinates Forward (+)

8300487 .. 8303436

Gene Structure 2950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0105800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGCCAATACGGTTGAAGCCGGAGCCTGGTCACCGTGGCCAAACCTGGTCCGCTCTGCCGTCCGAACTCTGGGAGGAAATCTATAAGCGATTGCCCACGTCTGATCGAATTCGTTTGGCTTCAGTCTCCAAGGATTGGCTCTCCGTCGCCGCCACAAAGCCTCCCCCTCCTCCTGTGGTCGACCCATGGCTCATCTTTCCCGGCCGGTTGAAGCGTGGTCACCGTGGCCGGTACCGGTCTGTTCTACCGCGGGAACTGTGGGAGAAAATCTATAAGCGATTGCCCACGTCAGATCGAATTCGTTTTGCTTCAGTCTCGAATAACTGTCTCTCCATCGCCGCCACAAAGCCGCCACCTCCTCCTGTGCTGGATCCGTGGCTCATGATTCGCGGTACGAATAAGTTTTGGTCTCTAGTACAGAAAAGGTTTTACAGATTCGATAACATAATACCACCAAAAAAAATATATAAAATTCTTGGAGCTTCTGATGGTTGGGTGCTTACTGAACATCCCGGTCCTGAATTTGAAGCACAAAAGCAACTTACCCTTGTGAATCCAATCTCAAATGCCAAAATTATTCTACCACCAATAGAATATAAACGAATCCAATACATGAAGAAACTCCTTGTCGTAACCTTTGGTGATTCAGTTGTCCCAGCTGGTGTGTTTATACGTACTCGTGGGAATTATCTTATCGCCTGTACTTGTGACAATAGACCATGGAGGGATTACCCTGGCGGCTACTCCGATGATGTGTTGTTTTACAATGGGAAAATGTATAGCATGATGATCCGAACATCAAACACTGTTGCCATTACTGTTCGTAGCTTAAATGAACAATTGAATCACCGTCGAGAGGATACCTATGTTGTTCAAGACATGGGCAATTTGAGGAGGAGTACTGGAGTATTAGAGGTCTACTTGGTAGAGTCTTGTGGAGATCTCTTGCTTGTAAAGAGACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009099 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

321

Amino Acids

36.99

Weight (kDa)

9.91

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	16 - 51	1.8e-08	F-box domain
F-box	PF00646	82 - 115	1.6e-06	F-box domain
Beta-prop_KIB1-4	PF03478	154 - 320	1.4e-17	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48560
fragaria_vesca	FvH4_7g06770
malus_domestica	MD06G1028700.v1.1 MD10G1013700.v1.1
prunus_persica	Prupe.5G043100_v2.0.a1 Prupe.8G001300_v2.0.a1 Prupe.8G001300_v2.0.a1
pyrus_communis	pycom06g02280 pycom10g00840
rosa_chinensis	RchiOBHm_Chr7g0208791
rosa_laevigata	RLG00000003195 RLG00000015583
rosa_multiflora	Rmu_co8493263.1_g000001 Rmu_sc0000278.1_g000002 Rmu_sc0008663.1_g000001 Rmu_sc0018750.1_g000002
rosa_roxburghii	Rroxscaffold_3G00250260 Rroxscaffold_7G00217760
rosa_rugosa	Rorug05G0492000 Rorug07G0105800
rosa_samantha	Rh6AG001800 Rh7AG241000 Rh7BG235900 Rh7CG255600 Rh7DG247000
rosa_wichuraiana	Rw6G000240 Rw7G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	231
AccB7I	CCANNNNNTGG	1 cut(s)	135
AccBSI	CCGCTC	1 cut(s)	53
AccI	GTMKAC	2 cut(s)	180, 918
AccII	CGCG	2 cut(s)	250, 390
AciI	CCGC	8 cut(s)	51, 150, 248, 250, 339, 350, 390, 738
AclWI	GGATC	3 cut(s)	365, 378, 784
AcoI	YGGCCR	3 cut(s)	37, 202, 226
AcsI	RAATTY	4 cut(s)	108, 297, 471, 521
AcuI	CTGAAG	2 cut(s)	105, 294
AfaI	GTAC	6 cut(s)	233, 394, 417, 676, 703, 901
AfiI	CCNNNNNNNGG	4 cut(s)	26, 69, 135, 856
AgeI	ACCGGT	1 cut(s)	234
AgsI	TTSAA	5 cut(s)	16, 211, 527, 844, 875
AjiI	CACGTC	2 cut(s)	99, 288
AjnI	CCWGG	3 cut(s)	25, 44, 733
AluBI	AGCT	3 cut(s)	482, 659, 828
AluI	AGCT	3 cut(s)	482, 659, 828
Alw26I	GTCTC	5 cut(s)	130, 319, 332, 414, 952
AlwI	GGATC	3 cut(s)	365, 378, 784
AoxI	GGCC	3 cut(s)	37, 202, 226
ApoI	RAATTY	4 cut(s)	108, 297, 471, 521
AsiGI	ACCGGT	1 cut(s)	234
Asp718I	GGTACC	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	48, 515
AsuC2I	CCSGG	2 cut(s)	201, 513
AsuHPI	GGTGA	4 cut(s)	23, 212, 653, 839
AvaII	GGWCC	2 cut(s)	48, 515
BaeI	ACNNNNGTAYC	2 cut(s)	852, 885
BalI	TGGCCA	1 cut(s)	39
BamHI	GGATCC	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	678
BccI	CCATC	2 cut(s)	341, 482
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	3 cut(s)	27, 46, 735
BciVI	GTATCC	1 cut(s)	853
BcnI	CCSGG	2 cut(s)	201, 513
BcoDI	GTCTC	5 cut(s)	130, 319, 332, 414, 952
BfaI	CTAG	1 cut(s)	413
BfuI	GTATCC	1 cut(s)	853
BglII	AGATCT	1 cut(s)	940
BisI	GCNGC	4 cut(s)	150, 339, 350, 739
BlsI	GCNGC	4 cut(s)	151, 340, 351, 740
BmcAI	AGTACT	1 cut(s)	901
Bme1390I	CCNGG	5 cut(s)	27, 46, 201, 513, 735
Bme18I	GGWCC	2 cut(s)	48, 515
BmgBI	CACGTC	2 cut(s)	99, 288
BmgT120I	GGNCC	2 cut(s)	48, 515
BmiI	GGNNCC	3 cut(s)	24, 233, 372
BmrFI	CCNGG	5 cut(s)	27, 46, 201, 513, 735
BpmI	CTGGAG	1 cut(s)	924
BpuMI	CCSGG	2 cut(s)	201, 513
BsaAI	YACGTR	1 cut(s)	674
BsaI	GGTCTC	1 cut(s)	414
BsaJI	CCNNGG	8 cut(s)	34, 129, 185, 223, 248, 374, 719, 733
BsaWI	WCCGGW	1 cut(s)	234
BsaXI	ACNNNNNCTCC	4 cut(s)	145, 175, 314, 344
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 69, 135, 856
Bse118I	RCCGGY	3 cut(s)	204, 228, 234
Bse1I	ACTGG	1 cut(s)	907
BseBI	CCWGG	3 cut(s)	27, 46, 735
BseDI	CCNNGG	8 cut(s)	34, 129, 185, 223, 248, 374, 719, 733
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	4 cut(s)	26, 69, 135, 856
BseNI	ACTGG	1 cut(s)	907
BseRI	GAGGAG	4 cut(s)	159, 348, 907, 910
BseX3I	CGGCCG	1 cut(s)	202
BseYI	CCCAGC	1 cut(s)	655
Bsh1236I	CGCG	2 cut(s)	250, 390
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	3 cut(s)	39, 204, 228
BshNI	GGYRCC	1 cut(s)	231
BshTI	ACCGGT	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	205
BsiSI	CCGG	6 cut(s)	20, 201, 205, 229, 235, 513
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	4 cut(s)	26, 69, 135, 856
BsmAI	GTCTC	5 cut(s)	130, 319, 332, 414, 952
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	3 cut(s)	39, 204, 228
Bso31I	GGTCTC	1 cut(s)	414
Bsp143I	GATC	5 cut(s)	103, 292, 370, 789, 940
Bsp19I	CCATGG	2 cut(s)	185, 719
BspACI	CCGC	8 cut(s)	51, 150, 248, 250, 339, 350, 390, 738
BspANI	GGCC	3 cut(s)	39, 204, 228
BspFNI	CGCG	2 cut(s)	250, 390
BspHI	TCATGA	1 cut(s)	381
BspLI	GGNNCC	3 cut(s)	24, 233, 372
BspPI	GGATC	3 cut(s)	365, 378, 784
BspT107I	GGYRCC	1 cut(s)	231
BspTNI	GGTCTC	1 cut(s)	414
BsrBI	CCGCTC	1 cut(s)	53
BsrFI	RCCGGY	3 cut(s)	204, 228, 234
BsrI	ACTGG	1 cut(s)	907
BssAI	RCCGGY	3 cut(s)	204, 228, 234
BssECI	CCNNGG	8 cut(s)	34, 129, 185, 223, 248, 374, 719, 733
BssMI	GATC	5 cut(s)	103, 292, 370, 789, 940
BssSI	CACGAG	1 cut(s)	678
BssT1I	CCWWGG	3 cut(s)	129, 185, 719
Bst2BI	CACGAG	1 cut(s)	678
Bst2UI	CCWGG	3 cut(s)	27, 46, 735
Bst4CI	ACNGT	8 cut(s)	12, 35, 224, 258, 326, 808, 820, 851
BstBAI	YACGTR	1 cut(s)	674
BstDSI	CCRYGG	6 cut(s)	34, 185, 223, 248, 374, 719
BstEII	GGTNACC	2 cut(s)	29, 218
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	2 cut(s)	250, 390
BstKTI	GATC	5 cut(s)	106, 295, 373, 792, 943
BstMAI	GTCTC	5 cut(s)	130, 319, 332, 414, 952
BstMBI	GATC	5 cut(s)	103, 292, 370, 789, 940
BstMCI	CGRYCG	1 cut(s)	205
BstNI	CCWGG	3 cut(s)	27, 46, 735
BstPI	GGTNACC	2 cut(s)	29, 218
BstSCI	CCNGG	5 cut(s)	25, 44, 199, 511, 733
BstSNI	TACGTA	1 cut(s)	674
BstUI	CGCG	2 cut(s)	250, 390
BstX2I	RGATCY	2 cut(s)	370, 940
BstYI	RGATCY	2 cut(s)	370, 940
BstZI	CGGCCG	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	853
BsuRI	GGCC	3 cut(s)	39, 204, 228
BtgI	CCRYGG	6 cut(s)	34, 185, 223, 248, 374, 719
BtgZI	GCGATG	1 cut(s)	319
BtrI	CACGTC	2 cut(s)	99, 288
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	804
CciI	TCATGA	1 cut(s)	381
Cfr10I	RCCGGY	3 cut(s)	204, 228, 234
Cfr13I	GGNCC	2 cut(s)	48, 515
Cfr42I	CCGCGG	1 cut(s)	251
CsiI	ACCWGGT	1 cut(s)	44
Csp6I	GTAC	6 cut(s)	232, 393, 416, 675, 702, 900
CspAI	ACCGGT	1 cut(s)	234
CviAII	CATG	6 cut(s)	186, 382, 613, 720, 784, 880
CviQI	GTAC	6 cut(s)	232, 393, 416, 675, 702, 900
DpnI	GATC	5 cut(s)	105, 294, 372, 791, 942
DpnII	GATC	5 cut(s)	103, 292, 370, 789, 940
EaeI	YGGCCR	3 cut(s)	37, 202, 226
EagI	CGGCCG	1 cut(s)	202
EclXI	CGGCCG	1 cut(s)	202
Eco105I	TACGTA	1 cut(s)	674
Eco130I	CCWWGG	3 cut(s)	129, 185, 719
Eco31I	GGTCTC	1 cut(s)	414
Eco47I	GGWCC	2 cut(s)	48, 515
Eco52I	CGGCCG	1 cut(s)	202
Eco57I	CTGAAG	2 cut(s)	105, 294
Eco91I	GGTNACC	2 cut(s)	29, 218
EcoO65I	GGTNACC	2 cut(s)	29, 218
EcoRI	GAATTC	2 cut(s)	108, 297
EcoRII	CCWGG	3 cut(s)	25, 44, 733
EcoT14I	CCWWGG	3 cut(s)	129, 185, 719
ErhI	CCWWGG	3 cut(s)	129, 185, 719
FaeI	CATG	6 cut(s)	189, 385, 616, 723, 787, 883
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	6 cut(s)	185, 381, 612, 719, 783, 879
FauI	CCCGC	1 cut(s)	243
FblI	GTMKAC	2 cut(s)	180, 918
Fnu4HI	GCNGC	4 cut(s)	150, 339, 350, 739
FokI	GGATG	1 cut(s)	495
Fsp4HI	GCNGC	4 cut(s)	150, 339, 350, 739
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	4 cut(s)	150, 339, 350, 739
GsaI	CCCAGC	1 cut(s)	659
GsuI	CTGGAG	1 cut(s)	924
HaeIII	GGCC	3 cut(s)	39, 204, 228
HapII	CCGG	6 cut(s)	20, 201, 205, 229, 235, 513
Hin1II	CATG	6 cut(s)	189, 385, 616, 723, 787, 883
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	8 cut(s)	385, 435, 553, 603, 644, 844, 929, 960
HpaII	CCGG	6 cut(s)	20, 201, 205, 229, 235, 513
HphI	GGTGA	4 cut(s)	23, 212, 653, 839
Hpy166II	GTNNAC	2 cut(s)	181, 919
Hpy188I	TCNGA	7 cut(s)	64, 103, 292, 487, 748, 794, 965
Hpy188III	TCNNGA	5 cut(s)	316, 382, 518, 854, 875
Hpy8I	GTNNAC	2 cut(s)	181, 919
Hpy99I	CGWCG	2 cut(s)	149, 855
HpyCH4III	ACNGT	8 cut(s)	12, 35, 224, 258, 326, 808, 820, 851
HpyCH4IV	ACGT	3 cut(s)	98, 287, 673
HpySE526I	ACGT	3 cut(s)	98, 287, 673
Hsp92II	CATG	6 cut(s)	189, 385, 616, 723, 787, 883
KpnI	GGTACC	1 cut(s)	235
KspI	CCGCGG	1 cut(s)	251
Kzo9I	GATC	5 cut(s)	103, 292, 370, 789, 940
LmnI	GCTCC	2 cut(s)	22, 479
MabI	ACCWGGT	1 cut(s)	44
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	3 cut(s)	98, 287, 673
MaeIII	GTNAC	4 cut(s)	29, 218, 631, 707
MalI	GATC	5 cut(s)	105, 294, 372, 791, 942
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	5 cut(s)	103, 292, 370, 789, 940
MboII	GAAGA	1 cut(s)	628
MfeI	CAATTG	1 cut(s)	839
MflI	RGATCY	2 cut(s)	370, 940
MlsI	TGGCCA	1 cut(s)	39
MluCI	AATT	8 cut(s)	108, 297, 471, 521, 573, 685, 839, 886
MluNI	TGGCCA	1 cut(s)	39
MlyI	GAGTC	2 cut(s)	938, 954
Mox20I	TGGCCA	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	39
MseI	TTAA	1 cut(s)	830
Msp20I	TGGCCA	1 cut(s)	39
MspA1I	CMGCKG	2 cut(s)	250, 659
MspI	CCGG	6 cut(s)	20, 201, 205, 229, 235, 513
MspR9I	CCNGG	5 cut(s)	27, 46, 201, 513, 735
MunI	CAATTG	1 cut(s)	839
MvaI	CCWGG	3 cut(s)	27, 46, 735
MvnI	CGCG	2 cut(s)	250, 390
NciI	CCSGG	2 cut(s)	201, 513
NcoI	CCATGG	2 cut(s)	185, 719
NdeII	GATC	5 cut(s)	103, 292, 370, 789, 940
NlaIII	CATG	6 cut(s)	189, 385, 616, 723, 787, 883
NlaIV	GGNNCC	3 cut(s)	24, 233, 372
NmuCI	GTSAC	3 cut(s)	29, 218, 707
PagI	TCATGA	1 cut(s)	381
PfeI	GAWTC	6 cut(s)	385, 435, 553, 603, 644, 844
PflMI	CCANNNNNTGG	1 cut(s)	135
PinAI	ACCGGT	1 cut(s)	234
PkrI	GCNGC	4 cut(s)	151, 340, 351, 740
PleI	GAGTC	2 cut(s)	937, 954
PpsI	GAGTC	2 cut(s)	937, 954
Ppu21I	YACGTR	1 cut(s)	674
Psp6I	CCWGG	3 cut(s)	25, 44, 733
PspEI	GGTNACC	2 cut(s)	29, 218
PspFI	CCCAGC	1 cut(s)	655
PspGI	CCWGG	3 cut(s)	25, 44, 733
PspN4I	GGNNCC	3 cut(s)	24, 233, 372
PspPI	GGNCC	2 cut(s)	48, 515
PsuI	RGATCY	2 cut(s)	370, 940
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	6 cut(s)	233, 394, 417, 676, 703, 901
RsaNI	GTAC	6 cut(s)	232, 393, 416, 675, 702, 900
SacII	CCGCGG	1 cut(s)	251
SalI	GTCGAC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	830
SatI	GCNGC	4 cut(s)	150, 339, 350, 739
Sau3AI	GATC	5 cut(s)	103, 292, 370, 789, 940
Sau96I	GGNCC	2 cut(s)	48, 515
ScaI	AGTACT	1 cut(s)	901
SchI	GAGTC	2 cut(s)	938, 954
ScrFI	CCNGG	5 cut(s)	27, 46, 201, 513, 735
SexAI	ACCWGGT	1 cut(s)	44
Sfr303I	CCGCGG	1 cut(s)	251
SgrBI	CCGCGG	1 cut(s)	251
SinI	GGWCC	2 cut(s)	48, 515
SnaBI	TACGTA	1 cut(s)	674
Sse9I	AATT	8 cut(s)	108, 297, 471, 521, 573, 685, 839, 886
SsiI	CCGC	8 cut(s)	51, 150, 248, 250, 339, 350, 390, 738
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	5 cut(s)	25, 44, 199, 511, 733
StyI	CCWWGG	3 cut(s)	129, 185, 719
TaaI	ACNGT	8 cut(s)	12, 35, 224, 258, 326, 808, 820, 851
TaiI	ACGT	3 cut(s)	101, 290, 676
TaqI	TCGA	6 cut(s)	106, 180, 295, 317, 438, 853
TasI	AATT	8 cut(s)	108, 297, 471, 521, 573, 685, 839, 886
TatI	WGTACW	3 cut(s)	415, 701, 899
TauI	GCSGC	4 cut(s)	152, 341, 352, 741
TfiI	GAWTC	6 cut(s)	385, 435, 553, 603, 644, 844
Tru1I	TTAA	1 cut(s)	830
Tru9I	TTAA	1 cut(s)	830
TscAI	CASTG	1 cut(s)	811
TseFI	GTSAC	3 cut(s)	29, 218, 707
Tsp45I	GTSAC	3 cut(s)	29, 218, 707
TspDTI	ATGAA	2 cut(s)	629, 849
TspGWI	ACGGA	2 cut(s)	133, 363
TspRI	CASTG	1 cut(s)	811
Van91I	CCANNNNNTGG	1 cut(s)	135
VpaK11BI	GGWCC	2 cut(s)	48, 515
XapI	RAATTY	4 cut(s)	108, 297, 471, 521
XmiI	GTMKAC	2 cut(s)	180, 918
XspI	CTAG	1 cut(s)	413
ZrmI	AGTACT	1 cut(s)	901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.