Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8493263.1

Orthogroup ID

OG0006113

Physical Location & Seq

Genomic Coordinates Reverse (-)

797 .. 2614

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8493263.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

cctctgcacatttctagttccctccctcctaaagccgcgactgccccttcggactcacaaagtttcacttcccgatttgcccctgacgagcccagaaaaggctccgatgtcctggtggaggccctcgaacgccaaggcgtcaccgacgtattcgcctaccccggaggcgcatccatggagatccatcaggccctcacgcgctcctccaccatccgcaatgttctcccccgccacgagcaaggtggcatcttcgctgctgagggctacgcgcgcgcctcgggccttcccggcgtctgtatcgcaacctcgggccctggcgctaccaacttagtcagtggccttgctgacgcactccttgacagcgttccggtcgtcgctatcaccggacaagtcccccgccggatgatcggcaccgacgcttttcaagagaccccaattgtagaggtaaccaggtccattacaaagcataactatcttgttcttgatgttgaagaaattcctagaattgttagtgaggcatttttcttggccacctccggccgccccggcccagttttgatagatataccaaaagacatacagcaacagcttgttgttccggattggaatcaacccattagattagcggggtacctgtctaggctgcccaatcctcccaatgaggcccatttggagcagattgtaaggttggtttccgaatccaagaagcctgtgttgtatgttggtggagggtgcttgaactcgagtgaggaattgaggcgatttgtggagtttactgggatccctgtcgcgactaccttgatgggtctcggggcatatcctagctcagatgagctgtcactccaaatgttgggaatgcatgggacagtgcatgctaattatgcagtggataagtctgacttgttgcttgcatttggggttaggtttgatgaccgggttacagggaagctcgaagcttttgctagccgagctaagattgttcacattgatattgattctgcagagattggaaagaataagcagcctcatgtatctgtttgtgcagatgtgagattggcattgggagggataaacagggtattggagggaaaaggatacaagttcaaacttgatttctcagcctggagggaggagctgaaagagcagaaaattagttatccattaaattataagacatttggtgacgccattcctcctcagtgtgctattcaggttcttgatgaattaactgatgggaatgcaatcataagcaccggtgtcgggcagcatcaaatgtgggcagctcaattttacaaatataagaggcctagacagtggttgacatcaggaggtttaggagctatgggttttggattgcctgctgctattggggcagctgtggcaaatccagatgccattgttgttgatattgatggtgatggaagcttcatgatgaatgttcaggaattagcaactatcagggtggaaaatcttcccattaagataatgctgttgaataatcagcatttgggtatggttgttcaatgggaggatcgcttctataaggcgaatagggctcacacttatttagggaacccattaaatgagtccgagatattccctaatatgctcaagttcgcagaagcttgtgggataccagctgcccgtgtgacaaagaaggaacatcttaaagaggcaattcagaaaatgttggacactcctggtccgtacttgttggatgtagtagtacctcatcaagagcatgtcttgcccatgattccgagtggtggtgcttttaaagatgtgataactgagggtgatggaagatcttcttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009099 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

605

Amino Acids

65.75

Weight (kDa)

5.89

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48560
fragaria_vesca	FvH4_7g06770
malus_domestica	MD06G1028700.v1.1 MD10G1013700.v1.1
prunus_persica	Prupe.5G043100_v2.0.a1 Prupe.8G001300_v2.0.a1 Prupe.8G001300_v2.0.a1
pyrus_communis	pycom06g02280 pycom10g00840
rosa_chinensis	RchiOBHm_Chr7g0208791
rosa_laevigata	RLG00000003195 RLG00000015583
rosa_multiflora	Rmu_co8493263.1_g000001 Rmu_sc0000278.1_g000002 Rmu_sc0008663.1_g000001 Rmu_sc0018750.1_g000002
rosa_roxburghii	Rroxscaffold_3G00250260 Rroxscaffold_7G00217760
rosa_rugosa	Rorug05G0492000 Rorug07G0105800
rosa_samantha	Rh6AG001800 Rh7AG241000 Rh7BG235900 Rh7CG255600 Rh7DG247000
rosa_wichuraiana	Rw6G000240 Rw7G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1170
Acc65I	GGTACC	1 cut(s)	630
AccB1I	GGYRCC	2 cut(s)	410, 630
AccB7I	CCANNNNNTGG	1 cut(s)	850
AccII	CGCG	6 cut(s)	38, 199, 269, 271, 273, 791
AccIII	TCCGGA	1 cut(s)	598
AciI	CCGC	6 cut(s)	36, 214, 229, 397, 541, 626
AclWI	GGATC	4 cut(s)	175, 775, 788, 1539
AcoI	YGGCCR	2 cut(s)	528, 538
AcsI	RAATTY	1 cut(s)	495
AcyI	GRCGYC	3 cut(s)	138, 291, 1185
AfaI	GTAC	3 cut(s)	632, 1709, 1728
AfiI	CCNNNNNNNGG	5 cut(s)	98, 118, 850, 1260, 1766
AgeI	ACCGGT	1 cut(s)	1253
AgsI	TTSAA	6 cut(s)	425, 491, 739, 1105, 1495, 1523
AjnI	CCWGG	5 cut(s)	111, 313, 449, 1121, 1699
Alw26I	GTCTC	2 cut(s)	422, 812
AlwI	GGATC	4 cut(s)	175, 775, 788, 1539
Ama87I	CYCGRG	4 cut(s)	277, 307, 742, 809
Aor13HI	TCCGGA	1 cut(s)	598
ApaI	GGGCCC	1 cut(s)	314
ApeKI	GCWGC	8 cut(s)	254, 643, 1021, 1264, 1280, 1361, 1373, 1640
ApoI	RAATTY	1 cut(s)	495
ArsI	GACNNNNNNTTYG	2 cut(s)	31, 63
AsiGI	ACCGGT	1 cut(s)	1253
Asp700I	GAANNNNTTC	3 cut(s)	495, 1470, 1807
Asp718I	GGTACC	1 cut(s)	630
AspLEI	GCGC	6 cut(s)	170, 201, 271, 273, 275, 320
AspS9I	GGNCC	9 cut(s)	121, 190, 280, 310, 311, 453, 548, 664, 1703
AsuC2I	CCSGG	4 cut(s)	162, 288, 546, 935
AsuHPI	GGTGA	5 cut(s)	133, 373, 1193, 1427, 1808
AsuNHI	GCTAGC	1 cut(s)	962
AvaI	CYCGRG	4 cut(s)	277, 307, 742, 809
AvaII	GGWCC	2 cut(s)	453, 1703
BaeGI	GKGCMC	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	530
BamHI	GGATCC	1 cut(s)	780
BanI	GGYRCC	2 cut(s)	410, 630
BanII	GRGCYC	3 cut(s)	93, 314, 1558
BauI	CACGAG	1 cut(s)	233
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	8 cut(s)	241, 630, 1033, 1276, 1292, 1348, 1385, 1627
BccI	CCATC	7 cut(s)	192, 218, 796, 1226, 1406, 1412, 1793
BcgI	CGANNNNNNTGC	4 cut(s)	941, 975, 1240, 1274
BciT130I	CCWGG	5 cut(s)	113, 315, 451, 1123, 1701
BciVI	GTATCC	2 cut(s)	1088, 1626
BcnI	CCSGG	4 cut(s)	162, 288, 546, 935
BcoDI	GTCTC	2 cut(s)	422, 812
BfaI	CTAG	6 cut(s)	15, 501, 639, 822, 963, 1308
BfmI	CTRYAG	1 cut(s)	999
BfoI	RGCGCY	1 cut(s)	321
BfuI	GTATCC	2 cut(s)	1088, 1626
BglI	GCCNNNNNGGC	2 cut(s)	288, 546
BglII	AGATCT	1 cut(s)	1805
Bme1390I	CCNGG	9 cut(s)	113, 162, 288, 315, 451, 546, 935, 1123, 1701
Bme18I	GGWCC	2 cut(s)	453, 1703
BmeT110I	CYCGRG	4 cut(s)	277, 307, 742, 809
BmgT120I	GGNCC	9 cut(s)	121, 190, 280, 310, 311, 453, 548, 664, 1703
BmiI	GGNNCC	6 cut(s)	103, 312, 412, 632, 782, 1574
BmrFI	CCNGG	9 cut(s)	113, 162, 288, 315, 451, 546, 935, 1123, 1701
BmrI	ACTGGG	2 cut(s)	545, 786
BmsI	GCATC	4 cut(s)	179, 255, 1276, 1381
BmtI	GCTAGC	1 cut(s)	966
BmuI	ACTGGG	2 cut(s)	545, 786
BpmI	CTGGAG	1 cut(s)	1144
Bpu10I	CCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	1595
BpuMI	CCSGG	4 cut(s)	162, 288, 546, 935
BsaBI	GATNNNNATC	1 cut(s)	606
BsaHI	GRCGYC	3 cut(s)	138, 291, 1185
BsaI	GGTCTC	2 cut(s)	422, 812
BsaJI	CCNNGG	7 cut(s)	133, 160, 174, 276, 306, 313, 544
BsaWI	WCCGGW	4 cut(s)	367, 383, 598, 1253
Bsc4I	CCNNNNNNNGG	5 cut(s)	98, 118, 850, 1260, 1766
Bse118I	RCCGGY	1 cut(s)	1253
Bse1I	ACTGG	2 cut(s)	551, 781
Bse3DI	GCAATG	1 cut(s)	223
Bse8I	GATNNNNATC	1 cut(s)	606
BseAI	TCCGGA	1 cut(s)	598
BseBI	CCWGG	5 cut(s)	113, 315, 451, 1123, 1701
BseDI	CCNNGG	7 cut(s)	133, 160, 174, 276, 306, 313, 544
BseGI	GGATG	4 cut(s)	170, 210, 408, 1723
BseJI	GATNNNNATC	1 cut(s)	606
BseLI	CCNNNNNNNGG	5 cut(s)	98, 118, 850, 1260, 1766
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	5 cut(s)	249, 840, 1131, 1211, 1782
BseNI	ACTGG	2 cut(s)	551, 781
BsePI	GCGCGC	2 cut(s)	269, 271
BseRI	GAGGAG	3 cut(s)	193, 1145, 1185
BseSI	GKGCMC	1 cut(s)	314
BseX3I	CGGCCG	1 cut(s)	538
BseXI	GCAGC	8 cut(s)	241, 630, 1033, 1276, 1292, 1348, 1385, 1627
BsgI	GTGCAG	1 cut(s)	1062
Bsh1236I	CGCG	6 cut(s)	38, 199, 269, 271, 273, 791
Bsh1285I	CGRYCG	2 cut(s)	372, 541
BshNI	GGYRCC	2 cut(s)	410, 630
BshTI	ACCGGT	1 cut(s)	1253
BsiEI	CGRYCG	2 cut(s)	372, 541
BsiHKCI	CYCGRG	4 cut(s)	277, 307, 742, 809
BslFI	GGGAC	2 cut(s)	377, 877
BslI	CCNNNNNNNGG	5 cut(s)	98, 118, 850, 1260, 1766
BsmAI	GTCTC	2 cut(s)	422, 812
BsmFI	GGGAC	2 cut(s)	377, 877
BsmI	GAATGC	2 cut(s)	861, 1243
Bso31I	GGTCTC	2 cut(s)	422, 812
BsoBI	CYCGRG	4 cut(s)	277, 307, 742, 809
Bsp120I	GGGCCC	1 cut(s)	310
Bsp1286I	GDGCHC	3 cut(s)	93, 314, 1558
Bsp13I	TCCGGA	1 cut(s)	598
Bsp143I	GATC	5 cut(s)	180, 405, 780, 1531, 1805
Bsp19I	CCATGG	1 cut(s)	174
Bsp68I	TCGCGA	1 cut(s)	791
BspACI	CCGC	6 cut(s)	36, 214, 229, 397, 541, 626
BspCNI	CTCAG	5 cut(s)	250, 839, 1130, 1210, 1783
BspEI	TCCGGA	1 cut(s)	598
BspFNI	CGCG	6 cut(s)	38, 199, 269, 271, 273, 791
BspHI	TCATGA	1 cut(s)	1428
BspLI	GGNNCC	6 cut(s)	103, 312, 412, 632, 782, 1574
BspMAI	CTGCAG	1 cut(s)	1003
BspOI	GCTAGC	1 cut(s)	966
BspPI	GGATC	4 cut(s)	175, 775, 788, 1539
BspT107I	GGYRCC	2 cut(s)	410, 630
BspTNI	GGTCTC	2 cut(s)	422, 812
BsrDI	GCAATG	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	1253
BsrI	ACTGG	2 cut(s)	551, 781
BssAI	RCCGGY	1 cut(s)	1253
BssECI	CCNNGG	7 cut(s)	133, 160, 174, 276, 306, 313, 544
BssHII	GCGCGC	2 cut(s)	269, 271
BssMI	GATC	5 cut(s)	180, 405, 780, 1531, 1805
BssNI	GRCGYC	3 cut(s)	138, 291, 1185
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	2 cut(s)	133, 174
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	5 cut(s)	113, 315, 451, 1123, 1701
Bst4CI	ACNGT	2 cut(s)	868, 1314
BstACI	GRCGYC	3 cut(s)	138, 291, 1185
BstAPI	GCANNNNNTGC	1 cut(s)	1747
BstC8I	GCNNGC	6 cut(s)	271, 273, 873, 909, 964, 1359
BstDEI	CTNAG	7 cut(s)	258, 328, 826, 972, 1117, 1197, 1791
BstDSI	CCRYGG	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	445
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstF5I	GGATG	4 cut(s)	170, 210, 408, 1723
BstFNI	CGCG	6 cut(s)	38, 199, 269, 271, 273, 791
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	6 cut(s)	170, 201, 271, 273, 275, 320
BstKTI	GATC	5 cut(s)	183, 408, 783, 1534, 1808
BstMAI	GTCTC	2 cut(s)	422, 812
BstMBI	GATC	5 cut(s)	180, 405, 780, 1531, 1805
BstMCI	CGRYCG	2 cut(s)	372, 541
BstNI	CCWGG	5 cut(s)	113, 315, 451, 1123, 1701
BstNSI	RCATGY	2 cut(s)	875, 1745
BstPI	GGTNACC	1 cut(s)	445
BstSCI	CCNGG	9 cut(s)	111, 160, 286, 313, 449, 544, 933, 1121, 1699
BstSFI	CTRYAG	1 cut(s)	999
BstSLI	GKGCMC	1 cut(s)	314
BstUI	CGCG	6 cut(s)	38, 199, 269, 271, 273, 791
BstV1I	GCAGC	8 cut(s)	241, 630, 1033, 1276, 1292, 1348, 1385, 1627
BstX2I	RGATCY	3 cut(s)	180, 780, 1805
BstYI	RGATCY	3 cut(s)	180, 780, 1805
BstZI	CGGCCG	1 cut(s)	538
BsuI	GTATCC	2 cut(s)	1088, 1626
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	4 cut(s)	170, 210, 408, 1723
BtsI	GCAGTG	1 cut(s)	891
BtsIMutI	CAGTG	5 cut(s)	340, 873, 891, 1205, 1319
BtuMI	TCGCGA	1 cut(s)	791
Cac8I	GCNNGC	6 cut(s)	271, 273, 873, 909, 964, 1359
CciI	TCATGA	1 cut(s)	1428
CfoI	GCGC	6 cut(s)	170, 201, 271, 273, 275, 320
Cfr10I	RCCGGY	1 cut(s)	1253
Cfr13I	GGNCC	9 cut(s)	121, 190, 280, 310, 311, 453, 548, 664, 1703
CseI	GACGC	5 cut(s)	127, 280, 356, 425, 1193
CsiI	ACCWGGT	1 cut(s)	449
Csp6I	GTAC	3 cut(s)	631, 1708, 1727
CspAI	ACCGGT	1 cut(s)	1253
CviAII	CATG	7 cut(s)	175, 860, 872, 1028, 1429, 1742, 1753
CviQI	GTAC	3 cut(s)	631, 1708, 1727
DdeI	CTNAG	7 cut(s)	258, 328, 826, 972, 1117, 1197, 1791
DpnI	GATC	5 cut(s)	182, 407, 782, 1533, 1807
DpnII	GATC	5 cut(s)	180, 405, 780, 1531, 1805
DraI	TTTAAA	1 cut(s)	1777
EaeI	YGGCCR	2 cut(s)	528, 538
EagI	CGGCCG	1 cut(s)	538
EclXI	CGGCCG	1 cut(s)	538
Eco130I	CCWWGG	2 cut(s)	133, 174
Eco147I	AGGCCT	1 cut(s)	1306
Eco24I	GRGCYC	3 cut(s)	93, 314, 1558
Eco31I	GGTCTC	2 cut(s)	422, 812
Eco47I	GGWCC	2 cut(s)	453, 1703
Eco52I	CGGCCG	1 cut(s)	538
Eco88I	CYCGRG	4 cut(s)	277, 307, 742, 809
Eco91I	GGTNACC	1 cut(s)	445
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoO109I	RGGNCCY	3 cut(s)	121, 190, 311
EcoO65I	GGTNACC	1 cut(s)	445
EcoRII	CCWGG	5 cut(s)	111, 313, 449, 1121, 1699
EcoT14I	CCWWGG	2 cut(s)	133, 174
EcoT22I	ATGCAT	1 cut(s)	861
EcoT38I	GRGCYC	3 cut(s)	93, 314, 1558
ErhI	CCWWGG	2 cut(s)	133, 174
FaeI	CATG	7 cut(s)	178, 863, 875, 1031, 1432, 1745, 1756
FalI	AAGNNNNNCTT	5 cut(s)	52, 84, 884, 916, 1795
FaqI	GGGAC	2 cut(s)	377, 877
FatI	CATG	7 cut(s)	174, 859, 871, 1027, 1428, 1741, 1752
FauI	CCCGC	3 cut(s)	236, 404, 619
FokI	GGATG	4 cut(s)	157, 197, 415, 1730
FriOI	GRGCYC	3 cut(s)	93, 314, 1558
FspBI	CTAG	6 cut(s)	15, 501, 639, 822, 963, 1308
GlaI	GCGC	6 cut(s)	169, 200, 270, 272, 274, 319
GsuI	CTGGAG	1 cut(s)	1144
HaeII	RGCGCY	1 cut(s)	321
HgaI	GACGC	5 cut(s)	127, 280, 356, 425, 1193
HhaI	GCGC	6 cut(s)	170, 201, 271, 273, 275, 320
Hin1I	GRCGYC	3 cut(s)	138, 291, 1185
Hin1II	CATG	7 cut(s)	178, 863, 875, 1031, 1432, 1745, 1756
Hin6I	GCGC	6 cut(s)	168, 199, 269, 271, 273, 318
HinP1I	GCGC	6 cut(s)	168, 199, 269, 271, 273, 318
HincII	GTYRAC	1 cut(s)	1320
HindII	GTYRAC	1 cut(s)	1320
HindIII	AAGCTT	3 cut(s)	954, 1423, 1623
HinfI	GANTC	6 cut(s)	53, 607, 698, 995, 1586, 1756
HphI	GGTGA	5 cut(s)	133, 373, 1193, 1427, 1808
Hpy166II	GTNNAC	3 cut(s)	774, 982, 1320
Hpy188I	TCNGA	8 cut(s)	52, 106, 697, 829, 898, 1591, 1683, 1761
Hpy8I	GTNNAC	3 cut(s)	774, 982, 1320
Hpy99I	CGWCG	3 cut(s)	149, 377, 419
HpyAV	CCTTC	3 cut(s)	57, 293, 1651
HpyCH4III	ACNGT	2 cut(s)	868, 1314
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	8 cut(s)	7, 859, 871, 884, 911, 1001, 1043, 1241
HpyF3I	CTNAG	7 cut(s)	258, 328, 826, 972, 1117, 1197, 1791
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	3 cut(s)	138, 291, 1185
Hsp92II	CATG	7 cut(s)	178, 863, 875, 1031, 1432, 1745, 1756
HspAI	GCGC	6 cut(s)	168, 199, 269, 271, 273, 318
Kpn2I	TCCGGA	1 cut(s)	598
KpnI	GGTACC	1 cut(s)	634
Kzo9I	GATC	5 cut(s)	180, 405, 780, 1531, 1805
LmnI	GCTCC	5 cut(s)	107, 206, 673, 1132, 1337
Lsp1109I	GCAGC	8 cut(s)	241, 630, 1033, 1276, 1292, 1348, 1385, 1627
LweI	GCATC	4 cut(s)	179, 255, 1276, 1381
MabI	ACCWGGT	1 cut(s)	449
MaeI	CTAG	6 cut(s)	15, 501, 639, 822, 963, 1308
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	6 cut(s)	139, 445, 837, 937, 1181, 1648
MalI	GATC	5 cut(s)	182, 407, 782, 1533, 1807
MauBI	CGCGCGCG	1 cut(s)	269
MboI	GATC	5 cut(s)	180, 405, 780, 1531, 1805
MboII	GAAGA	5 cut(s)	241, 503, 1463, 1800, 1815
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	3 cut(s)	180, 780, 1805
MhlI	GDGCHC	3 cut(s)	93, 314, 1558
MlsI	TGGCCA	1 cut(s)	530
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	2 cut(s)	47, 1595
MmeI	TCCRAC	2 cut(s)	1671, 1695
Mox20I	TGGCCA	1 cut(s)	530
Mph1103I	ATGCAT	1 cut(s)	861
MroI	TCCGGA	1 cut(s)	598
MroXI	GAANNNNTTC	3 cut(s)	495, 1470, 1807
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	6 cut(s)	1163, 1226, 1479, 1580, 1668, 1776
Msp20I	TGGCCA	1 cut(s)	530
MspA1I	CMGCKG	2 cut(s)	1376, 1640
MspR9I	CCNGG	9 cut(s)	113, 162, 288, 315, 451, 546, 935, 1123, 1701
MunI	CAATTG	1 cut(s)	435
Mva1269I	GAATGC	2 cut(s)	861, 1243
MvaI	CCWGG	5 cut(s)	113, 315, 451, 1123, 1701
MvnI	CGCG	6 cut(s)	38, 199, 269, 271, 273, 791
NciI	CCSGG	4 cut(s)	162, 288, 546, 935
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	5 cut(s)	180, 405, 780, 1531, 1805
NheI	GCTAGC	1 cut(s)	962
NlaIII	CATG	7 cut(s)	178, 863, 875, 1031, 1432, 1745, 1756
NlaIV	GGNNCC	6 cut(s)	103, 312, 412, 632, 782, 1574
NmeAIII	GCCGAG	1 cut(s)	992
NmuCI	GTSAC	4 cut(s)	139, 837, 1181, 1648
NruI	TCGCGA	1 cut(s)	791
NsiI	ATGCAT	1 cut(s)	861
NspI	RCATGY	2 cut(s)	875, 1745
PaeI	GCATGC	1 cut(s)	875
PaeR7I	CTCGAG	1 cut(s)	742
PagI	TCATGA	1 cut(s)	1428
PauI	GCGCGC	2 cut(s)	269, 271
PceI	AGGCCT	1 cut(s)	1306
PctI	GAATGC	2 cut(s)	861, 1243
PdmI	GAANNNNTTC	3 cut(s)	495, 1470, 1807
PfeI	GAWTC	4 cut(s)	607, 698, 995, 1756
PflMI	CCANNNNNTGG	1 cut(s)	850
PinAI	ACCGGT	1 cut(s)	1253
PleI	GAGTC	2 cut(s)	47, 1594
PpsI	GAGTC	2 cut(s)	47, 1594
PsiI	TTATAA	1 cut(s)	1170
Psp6I	CCWGG	5 cut(s)	111, 313, 449, 1121, 1699
PspEI	GGTNACC	1 cut(s)	445
PspGI	CCWGG	5 cut(s)	111, 313, 449, 1121, 1699
PspN4I	GGNNCC	6 cut(s)	103, 312, 412, 632, 782, 1574
PspOMI	GGGCCC	1 cut(s)	310
PspPI	GGNCC	9 cut(s)	121, 190, 280, 310, 311, 453, 548, 664, 1703
PspXI	VCTCGAGB	1 cut(s)	742
PstI	CTGCAG	1 cut(s)	1003
PsuI	RGATCY	3 cut(s)	180, 780, 1805
PteI	GCGCGC	2 cut(s)	269, 271
PvuII	CAGCTG	2 cut(s)	1376, 1640
RruI	TCGCGA	1 cut(s)	791
RsaI	GTAC	3 cut(s)	632, 1709, 1728
RsaNI	GTAC	3 cut(s)	631, 1708, 1727
SaqAI	TTAA	6 cut(s)	1163, 1226, 1479, 1580, 1668, 1776
Sau3AI	GATC	5 cut(s)	180, 405, 780, 1531, 1805
Sau96I	GGNCC	9 cut(s)	121, 190, 280, 310, 311, 453, 548, 664, 1703
SchI	GAGTC	2 cut(s)	47, 1595
ScrFI	CCNGG	9 cut(s)	113, 162, 288, 315, 451, 546, 935, 1123, 1701
SduI	GDGCHC	3 cut(s)	93, 314, 1558
SexAI	ACCWGGT	1 cut(s)	449
SfaNI	GCATC	4 cut(s)	179, 255, 1276, 1381
SfcI	CTRYAG	1 cut(s)	999
SfiI	GGCCNNNNNGGCC	1 cut(s)	546
Sfr274I	CTCGAG	1 cut(s)	742
SgrAI	CRCCGGYG	1 cut(s)	1253
SinI	GGWCC	2 cut(s)	453, 1703
SlaI	CTCGAG	1 cut(s)	742
SmlI	CTYRAG	2 cut(s)	742, 1610
SmoI	CTYRAG	2 cut(s)	742, 1610
SphI	GCATGC	1 cut(s)	875
SseBI	AGGCCT	1 cut(s)	1306
SsiI	CCGC	6 cut(s)	36, 214, 229, 397, 541, 626
SspMI	CTAG	6 cut(s)	15, 501, 639, 822, 963, 1308
StuI	AGGCCT	1 cut(s)	1306
StyD4I	CCNGG	9 cut(s)	111, 160, 286, 313, 449, 544, 933, 1121, 1699
StyI	CCWWGG	2 cut(s)	133, 174
TaaI	ACNGT	2 cut(s)	868, 1314
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	126, 743, 951
TauI	GCSGC	2 cut(s)	38, 543
TfiI	GAWTC	4 cut(s)	607, 698, 995, 1756
Tru1I	TTAA	6 cut(s)	1163, 1226, 1479, 1580, 1668, 1776
Tru9I	TTAA	6 cut(s)	1163, 1226, 1479, 1580, 1668, 1776
TscAI	CASTG	5 cut(s)	340, 873, 891, 1205, 1319
TseFI	GTSAC	4 cut(s)	139, 837, 1181, 1648
TseI	GCWGC	8 cut(s)	254, 643, 1021, 1264, 1280, 1361, 1373, 1640
Tsp45I	GTSAC	4 cut(s)	139, 837, 1181, 1648
TspDTI	ATGAA	3 cut(s)	1236, 1417, 1448
TspGWI	ACGGA	1 cut(s)	1695
TspRI	CASTG	5 cut(s)	340, 873, 891, 1205, 1319
Van91I	CCANNNNNTGG	1 cut(s)	850
VpaK11BI	GGWCC	2 cut(s)	453, 1703
XagI	CCTNNNNNAGG	1 cut(s)	116
XapI	RAATTY	1 cut(s)	495
XceI	RCATGY	2 cut(s)	875, 1745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XhoI	CTCGAG	1 cut(s)	742
XmnI	GAANNNNTTC	3 cut(s)	495, 1470, 1807
XspI	CTAG	6 cut(s)	15, 501, 639, 822, 963, 1308
Zsp2I	ATGCAT	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.