Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006113

Physical Location & Seq

Genomic Coordinates Reverse (-)

68288979 .. 68290946

Gene Structure 1968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1968 bp

ATGGCGGCTATTGCTCCACTCTCTTCCTCCTTGTCGAAATCGAAACCCTCGGCTTTCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAACAAATGCCATTTCCAGATGTACTTTCCGCCCCTTCCCGCCCATTACCCACCGACCTCTGCACATTTCTAGTTCCCTCCCTCCTAAAGCCGCGACTGCCCCTTCGGACTCACAAAGTTTCACTTCCCGATTTGCCCCTGACGAGCCCAGAAAAGGCTCCGATGTCCTCGTGGAGGCCCTCGAACGCCAAGGCGTCACCGACGTATTCGCCTACCCCGGAGGCGCATCCACGGAGATCCATCAGGCCCTCACGCGCTCCTCCACCATCCGCAATGTTCTCCCCCGCCACGAGCAAGGTGGCATCTTCGCTGCTGAGGGCTACGCGCGCGCTTCGGGCTTTCCCGGCGTCTGTATTGCAACCTCGGGCCCTGGCGCTACCAACTTAGTCAGTGGCCTTGCTGACGCACTCCTTGACAGCGTTCCGGTCGTCGCTATCACCGGACAAGTCCCCCGCCGGATGATCGGTACCGACGCTTTTCAAGAGACCCCAATTGTAGAGGTAACCAGGTCCATTACAAAGCATAACTATCTTGTTCTTGATGTTGAAGAAATTCCTAGAATTGTTAGTGAGGCATTTTTCTTGGCCACCTCCGGCCGCCCCGGCCCAGTTTTGATAGATATTCCAAAAGACATACAGCAACAGCTTGTCGTTCCGGATTGGAATCAACCCATTAGATTAGCGGGGTACATGTCTAGGCTGCCCAATCCTCCCAATGACGCCCATTTGGAGCAGATTGTAAGGTTGGTTTCCGAATCCAAGAAGCCTGTGTTGTATGTTGGTGGAGGGTGCTTGAACTCGAGTGAGGAATTGAGGCGATTTGTGGAGTTTACAGGGATCCCTGTCGCGACTACCTTGATGGGTCTCGGGGCATATCCTAGCTCAGATGAGCTGTCACTCCAAATGTTGGGAATGCATGGGACAGTGCATGCTAATTATGCAGTGGATAAGTCTGACTTGTTGCTTGCATTTGGGGTTAGGTTTGATGACCGGGTTACAGGGAAGCTCGAAGCTTTTGCTAGCCGAGCTAAGATTGTTCACATTGATATTGATTCTGCAGAGATTGGAAAGAATAAGCAGCCTCATGTATCTGTTTGTGCAGATGTGAGATTGGCATTGGGAGGGATAAACAGGGAATTGGAGGGAAAAGGATACAAGTTAAAACTTGATTTCTCAGCCTGGAGGGAGGAGCTGAAAGAGCAGAAAATTAGTTATCCATTAAATTATAAGACATTTGGTGACGCCATTCCTCCTCAGTTTGCTATTCAGGTTCTTGATGAATTAACTGATGGGAATGCAATCATAAGCACCGGTGTCGGGCAGCATCAAATGTGGGCAGCTCAATTTTACAAATATAAGAGGCCTAGGCAGTGGTTGACATCAGGAGGTTTAGGAGCTATGGGTTTTGGATTGCCTGCTGCTATTGGGGCAGCTGTTGCAAATCCAGATGCCATTGTTGTTGATATTGATGGTGATGGAAGCTTCATGATGAATGTTCAGGAATTAGCAACTATCAGGGTGGAAAATCTTCCCATTAAGATAATGCTGTTGAATAATCAGCATTTGGGTATGGTTGTTCAATGGGAGGATCGCTTCTATAAGGCAAACAGGGCTCACACTTATTTAGGGAACCCATTAAATGAGTCTGAGATATTCCCTAATATGCTCAAGTTCGCAGAAGCTTGTGGGATACCAGCTGCCCGTGTGACAAAGAAGGAACATCTTAAAGAGGCAATTCAGAAAATGCTGGACACTCCTGGTCCATACTTGTTGGATGTAATAGTACCTCATCAAGAGCATGTCTTGCCTATGATTCCTAGTGGTGGTGCTTTTAAAGATGTGATAACTGAGGGTGATGGAAGATCATCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009099 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

655

Amino Acids

70.94

Weight (kDa)

6.27

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPP_enzyme_N	PF02776	83 - 193	7.5e-36	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_M	PF00205	274 - 404	3.2e-45	Thiamine pyrophosphate enzyme, central domain
TPP_enzyme_C	PF02775	469 - 624	3.5e-52	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48560
fragaria_vesca	FvH4_7g06770
malus_domestica	MD06G1028700.v1.1 MD10G1013700.v1.1
prunus_persica	Prupe.5G043100_v2.0.a1 Prupe.8G001300_v2.0.a1 Prupe.8G001300_v2.0.a1
pyrus_communis	pycom06g02280 pycom10g00840
rosa_chinensis	RchiOBHm_Chr7g0208791
rosa_laevigata	RLG00000003195 RLG00000015583
rosa_multiflora	Rmu_co8493263.1_g000001 Rmu_sc0000278.1_g000002 Rmu_sc0008663.1_g000001 Rmu_sc0018750.1_g000002
rosa_roxburghii	Rroxscaffold_3G00250260 Rroxscaffold_7G00217760
rosa_rugosa	Rorug05G0492000 Rorug07G0105800
rosa_samantha	Rh6AG001800 Rh7AG241000 Rh7BG235900 Rh7CG255600 Rh7DG247000
rosa_wichuraiana	Rw6G000240 Rw7G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1320
Acc65I	GGTACC	1 cut(s)	560
AccB1I	GGYRCC	1 cut(s)	560
AccB7I	CCANNNNNTGG	1 cut(s)	1000
AccII	CGCG	6 cut(s)	188, 349, 419, 421, 423, 941
AccIII	TCCGGA	1 cut(s)	748
AciI	CCGC	9 cut(s)	5, 124, 134, 186, 364, 379, 547, 691, 776
AclWI	GGATC	4 cut(s)	325, 925, 938, 1689
AcoI	YGGCCR	2 cut(s)	678, 688
AcsI	RAATTY	1 cut(s)	645
AcyI	GRCGYC	4 cut(s)	288, 441, 813, 1335
AfaI	GTAC	4 cut(s)	118, 562, 782, 1878
AfiI	CCNNNNNNNGG	5 cut(s)	248, 268, 1000, 1410, 1916
AflIII	ACRYGT	1 cut(s)	783
AgeI	ACCGGT	1 cut(s)	1403
AgsI	TTSAA	6 cut(s)	96, 575, 641, 889, 1645, 1673
AjnI	CCWGG	4 cut(s)	463, 599, 1271, 1849
Alw26I	GTCTC	2 cut(s)	572, 962
AlwI	GGATC	4 cut(s)	325, 925, 938, 1689
Ama87I	CYCGRG	3 cut(s)	457, 892, 959
Aor13HI	TCCGGA	1 cut(s)	748
AoxI	GGCC	8 cut(s)	270, 339, 460, 487, 678, 688, 697, 1454
ApaI	GGGCCC	1 cut(s)	464
ApeKI	GCWGC	8 cut(s)	404, 793, 1171, 1414, 1430, 1511, 1523, 1790
ApoI	RAATTY	1 cut(s)	645
ArsI	GACNNNNNNTTYG	2 cut(s)	181, 213
AsiGI	ACCGGT	1 cut(s)	1403
Asp700I	GAANNNNTTC	2 cut(s)	645, 1620
Asp718I	GGTACC	1 cut(s)	560
AspA2I	CCTAGG	1 cut(s)	1457
AspLEI	GCGC	6 cut(s)	320, 351, 421, 423, 425, 470
AspS9I	GGNCC	7 cut(s)	271, 340, 460, 461, 603, 698, 1853
AsuC2I	CCSGG	4 cut(s)	312, 438, 696, 1085
AsuHPI	GGTGA	5 cut(s)	283, 523, 1343, 1577, 1958
AsuNHI	GCTAGC	1 cut(s)	1112
AvaI	CYCGRG	3 cut(s)	457, 892, 959
AvaII	GGWCC	2 cut(s)	603, 1853
AvrII	CCTAGG	1 cut(s)	1457
BaeGI	GKGCMC	1 cut(s)	464
BalI	TGGCCA	1 cut(s)	680
BamHI	GGATCC	1 cut(s)	930
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	3 cut(s)	243, 464, 1708
BauI	CACGAG	2 cut(s)	263, 383
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	8 cut(s)	391, 780, 1183, 1426, 1442, 1498, 1535, 1777
BccI	CCATC	7 cut(s)	342, 368, 946, 1376, 1556, 1562, 1943
BcgI	CGANNNNNNTGC	4 cut(s)	1091, 1125, 1390, 1424
BciT130I	CCWGG	4 cut(s)	465, 601, 1273, 1851
BciVI	GTATCC	2 cut(s)	1238, 1776
BcnI	CCSGG	4 cut(s)	312, 438, 696, 1085
BcoDI	GTCTC	2 cut(s)	572, 962
BfaI	CTAG	7 cut(s)	165, 651, 789, 972, 1113, 1458, 1911
BfmI	CTRYAG	1 cut(s)	1149
BfoI	RGCGCY	1 cut(s)	471
BfuI	GTATCC	2 cut(s)	1238, 1776
BglI	GCCNNNNNGGC	1 cut(s)	696
BlnI	CCTAGG	1 cut(s)	1457
Bme1390I	CCNGG	8 cut(s)	312, 438, 465, 601, 696, 1085, 1273, 1851
Bme18I	GGWCC	2 cut(s)	603, 1853
BmeT110I	CYCGRG	3 cut(s)	457, 892, 959
BmgT120I	GGNCC	7 cut(s)	271, 340, 460, 461, 603, 698, 1853
BmiI	GGNNCC	5 cut(s)	253, 462, 562, 932, 1724
BmrFI	CCNGG	8 cut(s)	312, 438, 465, 601, 696, 1085, 1273, 1851
BmrI	ACTGGG	1 cut(s)	695
BmsI	GCATC	4 cut(s)	329, 405, 1426, 1531
BmtI	GCTAGC	1 cut(s)	1116
BmuI	ACTGGG	1 cut(s)	695
BpmI	CTGGAG	1 cut(s)	1294
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	1745
BpuMI	CCSGG	4 cut(s)	312, 438, 696, 1085
BsaBI	GATNNNNATC	1 cut(s)	756
BsaHI	GRCGYC	4 cut(s)	288, 441, 813, 1335
BsaI	GGTCTC	2 cut(s)	572, 962
BsaJI	CCNNGG	8 cut(s)	48, 283, 310, 324, 456, 463, 694, 1457
BsaWI	WCCGGW	4 cut(s)	517, 533, 748, 1403
Bsc4I	CCNNNNNNNGG	5 cut(s)	248, 268, 1000, 1410, 1916
Bse118I	RCCGGY	1 cut(s)	1403
Bse1I	ACTGG	1 cut(s)	701
Bse3DI	GCAATG	1 cut(s)	373
Bse8I	GATNNNNATC	1 cut(s)	756
BseAI	TCCGGA	1 cut(s)	748
BseBI	CCWGG	4 cut(s)	465, 601, 1273, 1851
BseDI	CCNNGG	8 cut(s)	48, 283, 310, 324, 456, 463, 694, 1457
BseGI	GGATG	4 cut(s)	320, 360, 558, 1873
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	5 cut(s)	248, 268, 1000, 1410, 1916
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	6 cut(s)	399, 990, 1281, 1361, 1731, 1932
BseNI	ACTGG	1 cut(s)	701
BsePI	GCGCGC	2 cut(s)	419, 421
BseRI	GAGGAG	3 cut(s)	343, 1295, 1335
BseSI	GKGCMC	1 cut(s)	464
BseX3I	CGGCCG	1 cut(s)	688
BseXI	GCAGC	8 cut(s)	391, 780, 1183, 1426, 1442, 1498, 1535, 1777
BsgI	GTGCAG	2 cut(s)	140, 1212
Bsh1236I	CGCG	6 cut(s)	188, 349, 419, 421, 423, 941
Bsh1285I	CGRYCG	2 cut(s)	522, 691
BshFI	GGCC	8 cut(s)	272, 341, 462, 489, 680, 690, 699, 1456
BshNI	GGYRCC	1 cut(s)	560
BshTI	ACCGGT	1 cut(s)	1403
BsiEI	CGRYCG	2 cut(s)	522, 691
BsiHKCI	CYCGRG	3 cut(s)	457, 892, 959
BslFI	GGGAC	2 cut(s)	527, 1027
BslI	CCNNNNNNNGG	5 cut(s)	248, 268, 1000, 1410, 1916
BsmAI	GTCTC	2 cut(s)	572, 962
BsmFI	GGGAC	2 cut(s)	527, 1027
BsmI	GAATGC	2 cut(s)	1011, 1393
BsnI	GGCC	8 cut(s)	272, 341, 462, 489, 680, 690, 699, 1456
Bso31I	GGTCTC	2 cut(s)	572, 962
BsoBI	CYCGRG	3 cut(s)	457, 892, 959
Bsp120I	GGGCCC	1 cut(s)	460
Bsp1286I	GDGCHC	3 cut(s)	243, 464, 1708
Bsp13I	TCCGGA	1 cut(s)	748
Bsp143I	GATC	5 cut(s)	330, 555, 930, 1681, 1955
Bsp68I	TCGCGA	1 cut(s)	941
BspACI	CCGC	9 cut(s)	5, 124, 134, 186, 364, 379, 547, 691, 776
BspANI	GGCC	8 cut(s)	272, 341, 462, 489, 680, 690, 699, 1456
BspCNI	CTCAG	6 cut(s)	400, 989, 1280, 1360, 1732, 1933
BspEI	TCCGGA	1 cut(s)	748
BspFNI	CGCG	6 cut(s)	188, 349, 419, 421, 423, 941
BspHI	TCATGA	1 cut(s)	1578
BspLI	GGNNCC	5 cut(s)	253, 462, 562, 932, 1724
BspMAI	CTGCAG	1 cut(s)	1153
BspOI	GCTAGC	1 cut(s)	1116
BspPI	GGATC	4 cut(s)	325, 925, 938, 1689
BspT107I	GGYRCC	1 cut(s)	560
BspTNI	GGTCTC	2 cut(s)	572, 962
BsrDI	GCAATG	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	1403
BsrI	ACTGG	1 cut(s)	701
BssAI	RCCGGY	1 cut(s)	1403
BssECI	CCNNGG	8 cut(s)	48, 283, 310, 324, 456, 463, 694, 1457
BssHII	GCGCGC	2 cut(s)	419, 421
BssMI	GATC	5 cut(s)	330, 555, 930, 1681, 1955
BssNI	GRCGYC	4 cut(s)	288, 441, 813, 1335
BssSI	CACGAG	2 cut(s)	263, 383
BssT1I	CCWWGG	2 cut(s)	283, 1457
Bst2BI	CACGAG	2 cut(s)	263, 383
Bst2UI	CCWGG	4 cut(s)	465, 601, 1273, 1851
Bst4CI	ACNGT	1 cut(s)	1018
Bst6I	CTCTTC	1 cut(s)	28
BstACI	GRCGYC	4 cut(s)	288, 441, 813, 1335
BstAPI	GCANNNNNTGC	2 cut(s)	1529, 1897
BstC8I	GCNNGC	6 cut(s)	421, 423, 1023, 1059, 1114, 1509
BstDEI	CTNAG	8 cut(s)	408, 478, 976, 1122, 1267, 1347, 1740, 1941
BstDSI	CCRYGG	1 cut(s)	324
BstEII	GGTNACC	1 cut(s)	595
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	4 cut(s)	320, 360, 558, 1873
BstFNI	CGCG	6 cut(s)	188, 349, 419, 421, 423, 941
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	6 cut(s)	320, 351, 421, 423, 425, 470
BstKTI	GATC	5 cut(s)	333, 558, 933, 1684, 1958
BstMAI	GTCTC	2 cut(s)	572, 962
BstMBI	GATC	5 cut(s)	330, 555, 930, 1681, 1955
BstMCI	CGRYCG	2 cut(s)	522, 691
BstNI	CCWGG	4 cut(s)	465, 601, 1273, 1851
BstNSI	RCATGY	3 cut(s)	787, 1025, 1895
BstPI	GGTNACC	1 cut(s)	595
BstSCI	CCNGG	8 cut(s)	310, 436, 463, 599, 694, 1083, 1271, 1849
BstSFI	CTRYAG	1 cut(s)	1149
BstSLI	GKGCMC	1 cut(s)	464
BstUI	CGCG	6 cut(s)	188, 349, 419, 421, 423, 941
BstV1I	GCAGC	8 cut(s)	391, 780, 1183, 1426, 1442, 1498, 1535, 1777
BstX2I	RGATCY	2 cut(s)	330, 930
BstYI	RGATCY	2 cut(s)	330, 930
BstZI	CGGCCG	1 cut(s)	688
BsuI	GTATCC	2 cut(s)	1238, 1776
BsuRI	GGCC	8 cut(s)	272, 341, 462, 489, 680, 690, 699, 1456
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	4 cut(s)	320, 360, 558, 1873
BtsI	GCAGTG	2 cut(s)	1041, 1469
BtsIMutI	CAGTG	4 cut(s)	490, 1023, 1041, 1469
BtuMI	TCGCGA	1 cut(s)	941
Cac8I	GCNNGC	6 cut(s)	421, 423, 1023, 1059, 1114, 1509
CciI	TCATGA	1 cut(s)	1578
CfoI	GCGC	6 cut(s)	320, 351, 421, 423, 425, 470
Cfr10I	RCCGGY	1 cut(s)	1403
Cfr13I	GGNCC	7 cut(s)	271, 340, 460, 461, 603, 698, 1853
CseI	GACGC	6 cut(s)	277, 430, 506, 575, 821, 1343
CsiI	ACCWGGT	1 cut(s)	599
Csp6I	GTAC	4 cut(s)	117, 561, 781, 1877
CspAI	ACCGGT	1 cut(s)	1403
CviAII	CATG	6 cut(s)	784, 1010, 1022, 1178, 1579, 1892
CviQI	GTAC	4 cut(s)	117, 561, 781, 1877
DdeI	CTNAG	8 cut(s)	408, 478, 976, 1122, 1267, 1347, 1740, 1941
DpnI	GATC	5 cut(s)	332, 557, 932, 1683, 1957
DpnII	GATC	5 cut(s)	330, 555, 930, 1681, 1955
DraI	TTTAAA	1 cut(s)	1927
EaeI	YGGCCR	2 cut(s)	678, 688
EagI	CGGCCG	1 cut(s)	688
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
EciI	GGCGGA	1 cut(s)	113
EclXI	CGGCCG	1 cut(s)	688
Eco130I	CCWWGG	2 cut(s)	283, 1457
Eco147I	AGGCCT	1 cut(s)	1456
Eco24I	GRGCYC	3 cut(s)	243, 464, 1708
Eco31I	GGTCTC	2 cut(s)	572, 962
Eco47I	GGWCC	2 cut(s)	603, 1853
Eco52I	CGGCCG	1 cut(s)	688
Eco88I	CYCGRG	3 cut(s)	457, 892, 959
Eco91I	GGTNACC	1 cut(s)	595
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoO109I	RGGNCCY	3 cut(s)	271, 340, 461
EcoO65I	GGTNACC	1 cut(s)	595
EcoRII	CCWGG	4 cut(s)	463, 599, 1271, 1849
EcoT14I	CCWWGG	2 cut(s)	283, 1457
EcoT22I	ATGCAT	1 cut(s)	1011
EcoT38I	GRGCYC	3 cut(s)	243, 464, 1708
ErhI	CCWWGG	2 cut(s)	283, 1457
FaeI	CATG	6 cut(s)	787, 1013, 1025, 1181, 1582, 1895
FalI	AAGNNNNNCTT	5 cut(s)	202, 234, 1034, 1066, 1945
FaqI	GGGAC	2 cut(s)	527, 1027
FatI	CATG	6 cut(s)	783, 1009, 1021, 1177, 1578, 1891
FauI	CCCGC	4 cut(s)	141, 386, 554, 769
FokI	GGATG	4 cut(s)	307, 347, 565, 1880
FriOI	GRGCYC	3 cut(s)	243, 464, 1708
FspBI	CTAG	7 cut(s)	165, 651, 789, 972, 1113, 1458, 1911
GlaI	GCGC	6 cut(s)	319, 350, 420, 422, 424, 469
GsuI	CTGGAG	1 cut(s)	1294
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	8 cut(s)	272, 341, 462, 489, 680, 690, 699, 1456
HgaI	GACGC	6 cut(s)	277, 430, 506, 575, 821, 1343
HhaI	GCGC	6 cut(s)	320, 351, 421, 423, 425, 470
Hin1I	GRCGYC	4 cut(s)	288, 441, 813, 1335
Hin1II	CATG	6 cut(s)	787, 1013, 1025, 1181, 1582, 1895
Hin6I	GCGC	6 cut(s)	318, 349, 419, 421, 423, 468
HinP1I	GCGC	6 cut(s)	318, 349, 419, 421, 423, 468
HincII	GTYRAC	1 cut(s)	1470
HindII	GTYRAC	1 cut(s)	1470
HindIII	AAGCTT	3 cut(s)	1104, 1573, 1773
HinfI	GANTC	6 cut(s)	203, 757, 848, 1145, 1736, 1906
HphI	GGTGA	5 cut(s)	283, 523, 1343, 1577, 1958
Hpy166II	GTNNAC	3 cut(s)	924, 1132, 1470
Hpy188I	TCNGA	7 cut(s)	202, 256, 847, 979, 1048, 1741, 1833
Hpy8I	GTNNAC	3 cut(s)	924, 1132, 1470
Hpy99I	CGWCG	3 cut(s)	299, 527, 569
HpyAV	CCTTC	3 cut(s)	139, 207, 1801
HpyCH4III	ACNGT	1 cut(s)	1018
HpyCH4IV	ACGT	1 cut(s)	297
HpyF3I	CTNAG	8 cut(s)	408, 478, 976, 1122, 1267, 1347, 1740, 1941
HpySE526I	ACGT	1 cut(s)	297
Hsp92I	GRCGYC	4 cut(s)	288, 441, 813, 1335
Hsp92II	CATG	6 cut(s)	787, 1013, 1025, 1181, 1582, 1895
HspAI	GCGC	6 cut(s)	318, 349, 419, 421, 423, 468
Kpn2I	TCCGGA	1 cut(s)	748
KpnI	GGTACC	1 cut(s)	564
Kzo9I	GATC	5 cut(s)	330, 555, 930, 1681, 1955
LmnI	GCTCC	6 cut(s)	19, 257, 356, 823, 1282, 1487
Lsp1109I	GCAGC	8 cut(s)	391, 780, 1183, 1426, 1442, 1498, 1535, 1777
LweI	GCATC	4 cut(s)	329, 405, 1426, 1531
MabI	ACCWGGT	1 cut(s)	599
MaeI	CTAG	7 cut(s)	165, 651, 789, 972, 1113, 1458, 1911
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	6 cut(s)	289, 595, 987, 1087, 1331, 1798
MalI	GATC	5 cut(s)	332, 557, 932, 1683, 1957
MauBI	CGCGCGCG	1 cut(s)	419
MboI	GATC	5 cut(s)	330, 555, 930, 1681, 1955
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	2 cut(s)	330, 930
MhlI	GDGCHC	3 cut(s)	243, 464, 1708
MlsI	TGGCCA	1 cut(s)	680
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	2 cut(s)	197, 1745
MmeI	TCCRAC	1 cut(s)	1845
Mox20I	TGGCCA	1 cut(s)	680
Mph1103I	ATGCAT	1 cut(s)	1011
MroI	TCCGGA	1 cut(s)	748
MroXI	GAANNNNTTC	2 cut(s)	645, 1620
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	7 cut(s)	1253, 1313, 1376, 1629, 1730, 1818, 1926
Msp20I	TGGCCA	1 cut(s)	680
MspA1I	CMGCKG	2 cut(s)	1526, 1790
MspR9I	CCNGG	8 cut(s)	312, 438, 465, 601, 696, 1085, 1273, 1851
MunI	CAATTG	1 cut(s)	585
Mva1269I	GAATGC	2 cut(s)	1011, 1393
MvaI	CCWGG	4 cut(s)	465, 601, 1273, 1851
MvnI	CGCG	6 cut(s)	188, 349, 419, 421, 423, 941
NciI	CCSGG	4 cut(s)	312, 438, 696, 1085
NdeII	GATC	5 cut(s)	330, 555, 930, 1681, 1955
NheI	GCTAGC	1 cut(s)	1112
NlaIII	CATG	6 cut(s)	787, 1013, 1025, 1181, 1582, 1895
NlaIV	GGNNCC	5 cut(s)	253, 462, 562, 932, 1724
NmeAIII	GCCGAG	2 cut(s)	29, 1142
NmuCI	GTSAC	4 cut(s)	289, 987, 1331, 1798
NruI	TCGCGA	1 cut(s)	941
NsiI	ATGCAT	1 cut(s)	1011
NspI	RCATGY	3 cut(s)	787, 1025, 1895
PaeI	GCATGC	1 cut(s)	1025
PaeR7I	CTCGAG	1 cut(s)	892
PagI	TCATGA	1 cut(s)	1578
PauI	GCGCGC	2 cut(s)	419, 421
PceI	AGGCCT	1 cut(s)	1456
PciI	ACATGT	1 cut(s)	783
PctI	GAATGC	2 cut(s)	1011, 1393
PdmI	GAANNNNTTC	2 cut(s)	645, 1620
PfeI	GAWTC	4 cut(s)	757, 848, 1145, 1906
PflMI	CCANNNNNTGG	1 cut(s)	1000
PinAI	ACCGGT	1 cut(s)	1403
PleI	GAGTC	2 cut(s)	197, 1744
PpsI	GAGTC	2 cut(s)	197, 1744
PscI	ACATGT	1 cut(s)	783
PsiI	TTATAA	1 cut(s)	1320
Psp6I	CCWGG	4 cut(s)	463, 599, 1271, 1849
PspEI	GGTNACC	1 cut(s)	595
PspGI	CCWGG	4 cut(s)	463, 599, 1271, 1849
PspN4I	GGNNCC	5 cut(s)	253, 462, 562, 932, 1724
PspOMI	GGGCCC	1 cut(s)	460
PspPI	GGNCC	7 cut(s)	271, 340, 460, 461, 603, 698, 1853
PspXI	VCTCGAGB	1 cut(s)	892
PstI	CTGCAG	1 cut(s)	1153
PsuI	RGATCY	2 cut(s)	330, 930
PteI	GCGCGC	2 cut(s)	419, 421
PvuII	CAGCTG	2 cut(s)	1526, 1790
RruI	TCGCGA	1 cut(s)	941
RsaI	GTAC	4 cut(s)	118, 562, 782, 1878
RsaNI	GTAC	4 cut(s)	117, 561, 781, 1877
SaqAI	TTAA	7 cut(s)	1253, 1313, 1376, 1629, 1730, 1818, 1926
Sau3AI	GATC	5 cut(s)	330, 555, 930, 1681, 1955
Sau96I	GGNCC	7 cut(s)	271, 340, 460, 461, 603, 698, 1853
SchI	GAGTC	2 cut(s)	197, 1745
ScrFI	CCNGG	8 cut(s)	312, 438, 465, 601, 696, 1085, 1273, 1851
SduI	GDGCHC	3 cut(s)	243, 464, 1708
SexAI	ACCWGGT	1 cut(s)	599
SfaNI	GCATC	4 cut(s)	329, 405, 1426, 1531
SfcI	CTRYAG	1 cut(s)	1149
SfiI	GGCCNNNNNGGCC	1 cut(s)	696
Sfr274I	CTCGAG	1 cut(s)	892
SgrAI	CRCCGGYG	1 cut(s)	1403
SinI	GGWCC	2 cut(s)	603, 1853
SlaI	CTCGAG	1 cut(s)	892
SmlI	CTYRAG	2 cut(s)	892, 1760
SmoI	CTYRAG	2 cut(s)	892, 1760
SphI	GCATGC	1 cut(s)	1025
SseBI	AGGCCT	1 cut(s)	1456
SsiI	CCGC	9 cut(s)	5, 124, 134, 186, 364, 379, 547, 691, 776
SspMI	CTAG	7 cut(s)	165, 651, 789, 972, 1113, 1458, 1911
StuI	AGGCCT	1 cut(s)	1456
StyD4I	CCNGG	8 cut(s)	310, 436, 463, 599, 694, 1083, 1271, 1849
StyI	CCWWGG	2 cut(s)	283, 1457
TaaI	ACNGT	1 cut(s)	1018
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	5 cut(s)	35, 41, 276, 893, 1101
TatI	WGTACW	1 cut(s)	116
TauI	GCSGC	3 cut(s)	8, 188, 693
TfiI	GAWTC	4 cut(s)	757, 848, 1145, 1906
Tru1I	TTAA	7 cut(s)	1253, 1313, 1376, 1629, 1730, 1818, 1926
Tru9I	TTAA	7 cut(s)	1253, 1313, 1376, 1629, 1730, 1818, 1926
TscAI	CASTG	4 cut(s)	490, 1023, 1041, 1469
TseFI	GTSAC	4 cut(s)	289, 987, 1331, 1798
TseI	GCWGC	8 cut(s)	404, 793, 1171, 1414, 1430, 1511, 1523, 1790
Tsp45I	GTSAC	4 cut(s)	289, 987, 1331, 1798
TspDTI	ATGAA	3 cut(s)	1386, 1567, 1598
TspGWI	ACGGA	1 cut(s)	341
TspRI	CASTG	4 cut(s)	490, 1023, 1041, 1469
Van91I	CCANNNNNTGG	1 cut(s)	1000
VpaK11BI	GGWCC	2 cut(s)	603, 1853
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	645
XceI	RCATGY	3 cut(s)	787, 1025, 1895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XhoI	CTCGAG	1 cut(s)	892
XmaJI	CCTAGG	1 cut(s)	1457
XmnI	GAANNNNTTC	2 cut(s)	645, 1620
XspI	CTAG	7 cut(s)	165, 651, 789, 972, 1113, 1458, 1911
Zsp2I	ATGCAT	1 cut(s)	1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.