Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006113

Physical Location & Seq

Genomic Coordinates Reverse (-)

67469741 .. 67476200

Gene Structure 6460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0492000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAGAACAAGGTGAAGGAGTTTCTGGAGCTGAGCCAGGACGAGTCAGAGGCCGTGTCACGAATCGTTGTTCCACCCCAGCGACCAGGAACCGCGAGTTTGTACGAGGATTTCGCTCTCAGAAGCATCCGAGTCGACCGAGTCGAACCCGGACTCGTCGTCTGTACGCTCAAGGTTCCTCCCCGCCTCACCGATAGAGCTGGAAATTTGGCTAAAGGTGCCATTGCAAATGTTGTTGATATGGTTGGTGGTTATGTAACTTATGTTGAGGGTCTCCCAATGTATGTTTCAGTAGACATATCGATCTCCTATATATCAACTGCAAAGCTTGATGATGAGCTAGAGATCACCTCAAAAAGGTTAGGACAAAGAGGTGCTTATTATGGAGCAATAGTGCTTCTGAGAAACAAAGCAACTGGGGAGATTATTGCTGAGGGCCGTCATTCAATGTTTCGTCCCCGGTCTACTCCCAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009099 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

159

Amino Acids

17.51

Weight (kDa)

7.81

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48560
fragaria_vesca	FvH4_7g06770
malus_domestica	MD06G1028700.v1.1 MD10G1013700.v1.1
prunus_persica	Prupe.5G043100_v2.0.a1 Prupe.8G001300_v2.0.a1 Prupe.8G001300_v2.0.a1
pyrus_communis	pycom06g02280 pycom10g00840
rosa_chinensis	RchiOBHm_Chr7g0208791
rosa_laevigata	RLG00000003195 RLG00000015583
rosa_multiflora	Rmu_co8493263.1_g000001 Rmu_sc0000278.1_g000002 Rmu_sc0008663.1_g000001 Rmu_sc0018750.1_g000002
rosa_roxburghii	Rroxscaffold_3G00250260 Rroxscaffold_7G00217760
rosa_rugosa	Rorug05G0492000 Rorug07G0105800
rosa_samantha	Rh6AG001800 Rh7AG241000 Rh7BG235900 Rh7CG255600 Rh7DG247000
rosa_wichuraiana	Rw6G000240 Rw7G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AccI	GTMKAC	3 cut(s)	135, 294, 464
AccII	CGCG	1 cut(s)	95
AciI	CCGC	2 cut(s)	93, 184
AcsI	RAATTY	1 cut(s)	205
AfaI	GTAC	2 cut(s)	104, 166
AfiI	CCNNNNNNNGG	1 cut(s)	357
AgsI	TTSAA	1 cut(s)	447
AhdI	GACNNNNNGTC	1 cut(s)	158
AjnI	CCWGG	2 cut(s)	36, 85
AjuI	GAANNNNNNNTTGG	2 cut(s)	271, 303
AluBI	AGCT	4 cut(s)	31, 200, 328, 340
AluI	AGCT	4 cut(s)	31, 200, 328, 340
Alw26I	GTCTC	1 cut(s)	278
AoxI	GGCC	2 cut(s)	51, 436
ApoI	RAATTY	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	436
AsuC2I	CCSGG	2 cut(s)	150, 460
AsuHPI	GGTGA	3 cut(s)	25, 181, 340
BanI	GGYRCC	1 cut(s)	218
BbvCI	CCTCAGC	1 cut(s)	432
BceAI	ACGGC	2 cut(s)	38, 423
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	2 cut(s)	38, 87
BcnI	CCSGG	2 cut(s)	150, 460
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	341
BlpI	GCTNAGC	1 cut(s)	32
Bme1390I	CCNGG	4 cut(s)	38, 87, 150, 460
BmeRI	GACNNNNNGTC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	3 cut(s)	91, 177, 220
BmrFI	CCNGG	4 cut(s)	38, 87, 150, 460
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpmI	CTGGAG	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu1102I	GCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	2 cut(s)	150, 460
Bsa29I	ATCGAT	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	458
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	421
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	38, 87
BseCI	ATCGAT	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	4 cut(s)	23, 133, 392, 423
BseNI	ACTGG	1 cut(s)	421
BseYI	CCCAGC	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	95
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	2 cut(s)	53, 438
BshNI	GGYRCC	1 cut(s)	218
BshVI	ATCGAT	1 cut(s)	302
BsiEI	CGRYCG	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	150, 460
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	441
BsnI	GGCC	2 cut(s)	53, 438
Bso31I	GGTCTC	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	303, 345
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	2 cut(s)	93, 184
BspANI	GGCC	2 cut(s)	53, 438
BspCNI	CTCAG	4 cut(s)	24, 132, 393, 424
BspDI	ATCGAT	1 cut(s)	302
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	3 cut(s)	91, 177, 220
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	2 cut(s)	303, 345
Bst2UI	CCWGG	2 cut(s)	38, 87
BstDEI	CTNAG	4 cut(s)	32, 119, 401, 432
BstENI	CCTNNNNNAGG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	95
BstKTI	GATC	2 cut(s)	306, 348
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	2 cut(s)	303, 345
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	2 cut(s)	38, 87
BstSCI	CCNGG	4 cut(s)	36, 85, 148, 458
BstUI	CGCG	1 cut(s)	95
Bsu15I	ATCGAT	1 cut(s)	302
BsuRI	GGCC	2 cut(s)	53, 438
BsuTUI	ATCGAT	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	436
ClaI	ATCGAT	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	103, 165
CviJI	RGCY	8 cut(s)	31, 36, 53, 200, 212, 328, 340, 438
CviKI_1	RGCY	8 cut(s)	31, 36, 53, 200, 212, 328, 340, 438
CviQI	GTAC	2 cut(s)	103, 165
DdeI	CTNAG	4 cut(s)	32, 119, 401, 432
DpnI	GATC	2 cut(s)	305, 347
DpnII	GATC	2 cut(s)	303, 345
DriI	GACNNNNNGTC	1 cut(s)	158
Eam1105I	GACNNNNNGTC	1 cut(s)	158
Eco31I	GGTCTC	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	355
EcoRII	CCWGG	2 cut(s)	36, 85
FaiI	YATR	8 cut(s)	242, 255, 264, 285, 299, 312, 314, 384
FalI	AAGNNNNNCTT	2 cut(s)	361, 393
FaqI	GGGAC	1 cut(s)	441
FauI	CCCGC	1 cut(s)	191
FblI	GTMKAC	3 cut(s)	135, 294, 464
FokI	GGATG	1 cut(s)	113
FspBI	CTAG	1 cut(s)	341
GsaI	CCCAGC	1 cut(s)	82
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	53, 438
HapII	CCGG	2 cut(s)	150, 460
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	5 cut(s)	44, 63, 132, 141, 153
HpaII	CCGG	2 cut(s)	150, 460
HphI	GGTGA	3 cut(s)	25, 181, 340
Hpy166II	GTNNAC	3 cut(s)	136, 295, 465
Hpy188I	TCNGA	5 cut(s)	49, 122, 131, 402, 479
Hpy188III	TCNNGA	2 cut(s)	26, 60
Hpy8I	GTNNAC	3 cut(s)	136, 295, 465
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	227, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	4 cut(s)	32, 119, 401, 432
Kzo9I	GATC	2 cut(s)	303, 345
LmnI	GCTCC	2 cut(s)	28, 386
LweI	GCATC	1 cut(s)	135
MaeI	CTAG	1 cut(s)	341
MaeIII	GTNAC	2 cut(s)	57, 256
MalI	GATC	2 cut(s)	305, 347
MboI	GATC	2 cut(s)	303, 345
MluCI	AATT	1 cut(s)	205
MlyI	GAGTC	4 cut(s)	53, 141, 147, 150
MnlI	CCTC	8 cut(s)	43, 100, 189, 197, 262, 361, 365, 427
MspI	CCGG	2 cut(s)	150, 460
MspR9I	CCNGG	4 cut(s)	38, 87, 150, 460
MvaI	CCWGG	2 cut(s)	38, 87
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	2 cut(s)	150, 460
NdeII	GATC	2 cut(s)	303, 345
NlaIV	GGNNCC	3 cut(s)	91, 177, 220
NmuCI	GTSAC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	63
PflFI	GACNNNGTC	1 cut(s)	140
PleI	GAGTC	4 cut(s)	52, 140, 147, 149
PpsI	GAGTC	4 cut(s)	52, 140, 147, 149
Psp6I	CCWGG	2 cut(s)	36, 85
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	2 cut(s)	36, 85
PspN4I	GGNNCC	3 cut(s)	91, 177, 220
PspPI	GGNCC	1 cut(s)	436
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	2 cut(s)	104, 166
RsaNI	GTAC	2 cut(s)	103, 165
SalI	GTCGAC	1 cut(s)	134
Sau3AI	GATC	2 cut(s)	303, 345
Sau96I	GGNCC	1 cut(s)	436
SchI	GAGTC	4 cut(s)	53, 141, 147, 150
ScrFI	CCNGG	4 cut(s)	38, 87, 150, 460
SfaNI	GCATC	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	2 cut(s)	93, 184
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	4 cut(s)	36, 85, 148, 458
TaqI	TCGA	3 cut(s)	135, 144, 302
TaqII	GACCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	57
Tth111I	GACNNNGTC	1 cut(s)	140
XagI	CCTNNNNNAGG	1 cut(s)	355
XapI	RAATTY	1 cut(s)	205
XmiI	GTMKAC	3 cut(s)	135, 294, 464
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.