Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006113

Physical Location & Seq

Genomic Coordinates Forward (+)

23582663 .. 23585076

Gene Structure 2414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG241000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGAAATATTTAAACCATAGAAAAAGGGAAATTAAAAATATAAATAGGATAAACTCTTGTGGACAAGAGCCAACCTCTTCGCAGCCACACTGGAGCAATCAAAATCTCTGCACTCTTGAGAGGCGCCTCTCTCTCACCTCGTCAACAATGGCGACCATAGCTCCACCCTCTTCCTCCTTCTCCAAACCCTCTCTTCCCACCAAATCCCCAAACCCACTTTCCCGATATGCCCTCCCCTACTTCCCTTACCCCAACAAGCACACACCCTTCCGCCCTCTCCACATCTCCAACTCTCTCACCCCCAAAGCCACCACCACACCTGTCACCGCTACCACAACAATCACCGCTGCTCCTCCAGACCCAGCAACTCCAATTCCCCGATTTGCCCCTGACGAGCCCAGAAAAGGCGCCGATGTCCTCGTGGAGGCCCTCGAGCGCCAGGGCGTCACCACCGTCTTCGCCTACCCCGGCGGCGCGTCGATGGAGATCCACCAGGCCCTCACGCGCTCCACCACCATCCGCAACGTCCTCCCCCGCCACGAGCAGGGCGGCGTCTTCGCCGCCGAGGGCTATGCGCGCGCGTCGGGCCTTCCGGGCGTATGCATTGCCACCTCCGGCCCCGGCGCGACCAATCTGGTCAGCGGTCTTGCCGACGCGCTCATGGACAGCATTCCGATGGTGGCAATCACCGGACAAGTGCCCCGCCGGATGATCGGAACTGATGCATTTCAGGAGACGCCGATTGTTGAGGTAACCAGATCCATCACCAAGCACAATTACCTTGTTCTTGATGTAGAGGACATTCCTATAATTGTTAAAGAAGCGTTTTTCCTAGCTACATCGGGTAGACCCGGCCCTGTTTTGATTGATATACCCAAAGATGTGCAGCAACAGCTTGTGGTTCCAGATTGGGACCAACCCATTAGGTTAACTGGTTACATGTCTAGGTTGCCCAAAAGCCCCAGTGAGGTACATCTGGAGCAGATTGTGAGGTTGGTGTCGGAGTCGAAGAAACCGGTGTTGTATGTTGGTGGAGGGTGTTTGAACTCGAGTGAGGAGTTGAGGCGGTTCGTGGAGCTTACTGGGATCCCAGTTACTAGTACTTTGATGGGTCTCGGGACTTACCCGAGCTCCGATGAAGATGACTTGTCACTGCAGATGCTTGGGATGCATGGAACTGTTTATGCTAACTATGCTGTGGACAAGGCTGACTTGTTGCTGGCTTTTGGTGTGAGGTTTGATGATCGTGTGACTGGGAAGCTGGAGGCATTTGCTAGCCGGGCTAAGATTGTGCACATTGATATTGATTCTGCAGAGATTGGGAAGAACAAGCAGCCTCATGTGTCTATTTGTGGTGATGTGAAACCAGCGTTGCAAGGGTTGAACAGGATATTGGAGGGGAAATTGGAGAAGCTTAAGCTTGATTTTTCAGCTTGGAGGGCGGAGCTGAAAGAGCAGAAATTGAAGTTTCCATTGGGTTACAAGACTTTTGGGGAGGCCATCCCTCCTCAGTATGCCATTCAGGTTCTTGATGAGTTAACTGAAGGGAAGGCTATTATAAGCACTGGTGTTGGGCAACATCAGATGTGGGCGGCTCAACATTACAAGTATCTTAGGCCCCGACAGTGGTTGACTTCGGGGGGTTTAGGAGCCATGGGTTTTGGATTGCCAGCTGCTATGGGGGCTGCGGCAGCAAATCCAGGTGCTATTGTTGTCGACATTGATGGTGATGGAAGTTTTATGATGAATGTCCAAGAATTGGCAACAATCAAGGTGGAGAATCTTCCTGTCAAAATTCTGCTGTTGAACAATCAACATTTGGGTATGGTTGTTCAGTGGGAGGATCGCTTCTATAAGGCAAACAGGGCTCACACATACCTGGGCAACCCAGCAAATGAGTCTGAGATCTTTCCAAATATGCTGAAGTTCGCAGAAGCTTGTGGGGTACCAGCTGCCCGTGTGACGAAGAAGGAAGACCTCAAAGCGGCAATCCAGAAAATGTTGGACACTCCTGGGCCATACTTGTTGGACGTTATTGTACCACATCAAGAGCATGTGTTGCCTATGATCCCAAGCGGTGGTGCTTTCAAAGATGTGATAACTGAGGGTGATGGAAGAAGAAGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009099 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

709

Amino Acids

77.39

Weight (kDa)

8.05

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPP_enzyme_N	PF02776	135 - 245	6.2e-37	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_M	PF00205	326 - 461	6.8e-45	Thiamine pyrophosphate enzyme, central domain
TPP_enzyme_C	PF02775	523 - 678	4.2e-51	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48560
fragaria_vesca	FvH4_7g06770
malus_domestica	MD06G1028700.v1.1 MD10G1013700.v1.1
prunus_persica	Prupe.5G043100_v2.0.a1 Prupe.8G001300_v2.0.a1 Prupe.8G001300_v2.0.a1
pyrus_communis	pycom06g02280 pycom10g00840
rosa_chinensis	RchiOBHm_Chr7g0208791
rosa_laevigata	RLG00000003195 RLG00000015583
rosa_multiflora	Rmu_co8493263.1_g000001 Rmu_sc0000278.1_g000002 Rmu_sc0008663.1_g000001 Rmu_sc0018750.1_g000002
rosa_roxburghii	Rroxscaffold_3G00250260 Rroxscaffold_7G00217760
rosa_rugosa	Rorug05G0492000 Rorug07G0105800
rosa_samantha	Rh6AG001800 Rh7AG241000 Rh7BG235900 Rh7CG255600 Rh7DG247000
rosa_wichuraiana	Rw6G000240 Rw7G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1559
Acc65I	GGTACC	1 cut(s)	1945
AccB1I	GGYRCC	3 cut(s)	123, 407, 1945
AccB7I	CCANNNNNTGG	2 cut(s)	1759, 2078
AccI	GTMKAC	2 cut(s)	847, 1716
AccII	CGCG	7 cut(s)	476, 505, 577, 579, 581, 626, 656
AclWI	GGATC	6 cut(s)	481, 753, 1081, 1094, 1851, 2062
AcsI	RAATTY	1 cut(s)	1794
AcuI	CTGAAG	2 cut(s)	1563, 1943
AcyI	GRCGYC	5 cut(s)	124, 408, 444, 552, 737
AfaI	GTAC	4 cut(s)	972, 1102, 1947, 2040
AfiI	CCNNNNNNNGG	8 cut(s)	404, 424, 544, 967, 1626, 1759, 1984, 2078
AflII	CTTAAG	1 cut(s)	1415
AflIII	ACRYGT	1 cut(s)	939
AgeI	ACCGGT	1 cut(s)	1015
AgsI	TTSAA	5 cut(s)	1045, 1384, 1465, 1807, 2089
AhlI	ACTAGT	1 cut(s)	1097
AjnI	CCWGG	5 cut(s)	438, 492, 1699, 1878, 2011
AjuI	GAANNNNNNNTTGG	6 cut(s)	202, 234, 1376, 1408, 1457, 1489
Alw21I	GWGCWC	2 cut(s)	1133, 1296
Alw26I	GTCTC	2 cut(s)	728, 1118
Alw44I	GTGCAC	1 cut(s)	1292
AlwI	GGATC	6 cut(s)	481, 753, 1081, 1094, 1851, 2062
Ama87I	CYCGRG	4 cut(s)	431, 1048, 1115, 1126
AoxI	GGCC	8 cut(s)	426, 495, 586, 616, 853, 1497, 1616, 2015
ApaLI	GTGCAC	1 cut(s)	1292
ApeKI	GCWGC	8 cut(s)	82, 347, 886, 1333, 1673, 1685, 1691, 1952
ApoI	RAATTY	1 cut(s)	1794
AsiGI	ACCGGT	1 cut(s)	1015
Asp718I	GGTACC	1 cut(s)	1945
AspS9I	GGNCC	8 cut(s)	427, 496, 586, 617, 854, 913, 1617, 2015
AsuC2I	CCSGG	5 cut(s)	468, 594, 621, 852, 1280
AsuNHI	GCTAGC	1 cut(s)	1274
AvaI	CYCGRG	4 cut(s)	431, 1048, 1115, 1126
AvaII	GGWCC	1 cut(s)	913
BaeGI	GKGCMC	2 cut(s)	702, 1296
BamHI	GGATCC	1 cut(s)	1086
BanI	GGYRCC	3 cut(s)	123, 407, 1945
BanII	GRGCYC	3 cut(s)	399, 1133, 1870
BauI	CACGAG	2 cut(s)	419, 539
BbsI	GAAGAC	3 cut(s)	448, 547, 1980
Bbv12I	GWGCWC	2 cut(s)	1133, 1296
BbvI	GCAGC	8 cut(s)	94, 334, 898, 1345, 1660, 1672, 1703, 1939
BccI	CCATC	9 cut(s)	475, 524, 670, 770, 1102, 1508, 1718, 1724, 2105
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciT130I	CCWGG	5 cut(s)	440, 494, 1701, 1880, 2013
BcnI	CCSGG	5 cut(s)	468, 594, 621, 852, 1280
BcoDI	GTCTC	2 cut(s)	728, 1118
BcuI	ACTAGT	1 cut(s)	1097
BfaI	CTAG	4 cut(s)	833, 945, 1098, 1275
BfmI	CTRYAG	2 cut(s)	1154, 1311
BfoI	RGCGCY	3 cut(s)	127, 411, 439
BfrI	CTTAAG	1 cut(s)	1415
BglI	GCCNNNNNGGC	1 cut(s)	594
BglII	AGATCT	1 cut(s)	1905
BmcAI	AGTACT	1 cut(s)	1102
Bme18I	GGWCC	1 cut(s)	913
BmeT110I	CYCGRG	4 cut(s)	431, 1048, 1115, 1126
BmgT120I	GGNCC	8 cut(s)	427, 496, 586, 617, 854, 913, 1617, 2015
BmiI	GGNNCC	9 cut(s)	125, 409, 619, 903, 914, 1088, 1619, 1651, 1947
BmrI	ACTGGG	4 cut(s)	957, 1085, 1092, 1263
BmsI	GCATC	3 cut(s)	712, 1149, 1158
BmtI	GCTAGC	1 cut(s)	1278
BmuI	ACTGGG	4 cut(s)	957, 1085, 1092, 1263
BpiI	GAAGAC	3 cut(s)	448, 547, 1980
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BpmI	CTGGAG	4 cut(s)	112, 339, 998, 1283
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	5 cut(s)	468, 594, 621, 852, 1280
BsaBI	GATNNNNATC	1 cut(s)	485
BsaHI	GRCGYC	5 cut(s)	124, 408, 444, 552, 737
BsaI	GGTCTC	1 cut(s)	1118
BsaJI	CCNNGG	7 cut(s)	439, 466, 564, 619, 1653, 1879, 2012
BsaWI	WCCGGW	2 cut(s)	689, 1015
BsaXI	ACNNNNNCTCC	6 cut(s)	145, 175, 334, 364, 1115, 1145
Bsc4I	CCNNNNNNNGG	8 cut(s)	404, 424, 544, 967, 1626, 1759, 1984, 2078
Bse118I	RCCGGY	1 cut(s)	1015
Bse1I	ACTGG	7 cut(s)	95, 937, 963, 1087, 1091, 1258, 1570
Bse3DI	GCAATG	1 cut(s)	603
Bse8I	GATNNNNATC	1 cut(s)	485
BseBI	CCWGG	5 cut(s)	440, 494, 1701, 1880, 2013
BseDI	CCNNGG	7 cut(s)	439, 466, 564, 619, 1653, 1879, 2012
BseGI	GGATG	4 cut(s)	516, 714, 1173, 1500
BseJI	GATNNNNATC	1 cut(s)	485
BseLI	CCNNNNNNNGG	8 cut(s)	404, 424, 544, 967, 1626, 1759, 1984, 2078
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	3 cut(s)	1523, 1893, 2094
BseNI	ACTGG	7 cut(s)	95, 937, 963, 1087, 1091, 1258, 1570
BsePI	GCGCGC	2 cut(s)	575, 577
BseRI	GAGGAG	3 cut(s)	342, 1070, 1497
BseSI	GKGCMC	2 cut(s)	702, 1296
BseXI	GCAGC	8 cut(s)	94, 334, 898, 1345, 1660, 1672, 1703, 1939
BseYI	CCCAGC	2 cut(s)	361, 1888
BsgI	GTGCAG	2 cut(s)	94, 905
Bsh1236I	CGCG	7 cut(s)	476, 505, 577, 579, 581, 626, 656
BshFI	GGCC	8 cut(s)	428, 497, 588, 618, 855, 1499, 1618, 2017
BshNI	GGYRCC	3 cut(s)	123, 407, 1945
BshTI	ACCGGT	1 cut(s)	1015
BsiHKAI	GWGCWC	2 cut(s)	1133, 1296
BsiHKCI	CYCGRG	4 cut(s)	431, 1048, 1115, 1126
BsiSI	CCGG	9 cut(s)	468, 593, 615, 621, 690, 706, 852, 1016, 1279
BslFI	GGGAC	2 cut(s)	926, 1132
BslI	CCNNNNNNNGG	8 cut(s)	404, 424, 544, 967, 1626, 1759, 1984, 2078
BsmAI	GTCTC	2 cut(s)	728, 1118
BsmBI	CGTCTC	1 cut(s)	728
BsmFI	GGGAC	2 cut(s)	926, 1132
BsmI	GAATGC	1 cut(s)	669
BsnI	GGCC	8 cut(s)	428, 497, 588, 618, 855, 1499, 1618, 2017
Bso31I	GGTCTC	1 cut(s)	1118
BsoBI	CYCGRG	4 cut(s)	431, 1048, 1115, 1126
Bsp1286I	GDGCHC	5 cut(s)	399, 702, 1133, 1296, 1870
Bsp143I	GATC	8 cut(s)	486, 711, 758, 1086, 1243, 1843, 1905, 2067
Bsp19I	CCATGG	1 cut(s)	1653
BspANI	GGCC	8 cut(s)	428, 497, 588, 618, 855, 1499, 1618, 2017
BspCNI	CTCAG	3 cut(s)	1522, 1894, 2095
BspFNI	CGCG	7 cut(s)	476, 505, 577, 579, 581, 626, 656
BspLI	GGNNCC	9 cut(s)	125, 409, 619, 903, 914, 1088, 1619, 1651, 1947
BspMAI	CTGCAG	2 cut(s)	1158, 1315
BspOI	GCTAGC	1 cut(s)	1278
BspPI	GGATC	6 cut(s)	481, 753, 1081, 1094, 1851, 2062
BspT107I	GGYRCC	3 cut(s)	123, 407, 1945
BspTI	CTTAAG	1 cut(s)	1415
BspTNI	GGTCTC	1 cut(s)	1118
BsrDI	GCAATG	1 cut(s)	603
BsrFI	RCCGGY	1 cut(s)	1015
BsrI	ACTGG	7 cut(s)	95, 937, 963, 1087, 1091, 1258, 1570
BssAI	RCCGGY	1 cut(s)	1015
BssECI	CCNNGG	7 cut(s)	439, 466, 564, 619, 1653, 1879, 2012
BssHII	GCGCGC	2 cut(s)	575, 577
BssMI	GATC	8 cut(s)	486, 711, 758, 1086, 1243, 1843, 1905, 2067
BssNI	GRCGYC	5 cut(s)	124, 408, 444, 552, 737
BssSI	CACGAG	2 cut(s)	419, 539
BssT1I	CCWWGG	1 cut(s)	1653
Bst2BI	CACGAG	2 cut(s)	419, 539
Bst2UI	CCWGG	5 cut(s)	440, 494, 1701, 1880, 2013
Bst4CI	ACNGT	3 cut(s)	454, 1180, 1626
Bst6I	CTCTTC	3 cut(s)	82, 175, 198
BstACI	GRCGYC	5 cut(s)	124, 408, 444, 552, 737
BstAFI	CTTAAG	1 cut(s)	1415
BstAPI	GCANNNNNTGC	1 cut(s)	2059
BstC8I	GCNNGC	5 cut(s)	577, 579, 1221, 1276, 1671
BstDEI	CTNAG	5 cut(s)	1284, 1509, 1613, 1902, 2103
BstDSI	CCRYGG	1 cut(s)	1653
BstEII	GGTNACC	1 cut(s)	751
BstENI	CCTNNNNNAGG	1 cut(s)	422
BstF5I	GGATG	4 cut(s)	516, 714, 1173, 1500
BstFNI	CGCG	7 cut(s)	476, 505, 577, 579, 581, 626, 656
BstH2I	RGCGCY	3 cut(s)	127, 411, 439
BstKTI	GATC	8 cut(s)	489, 714, 761, 1089, 1246, 1846, 1908, 2070
BstMAI	GTCTC	2 cut(s)	728, 1118
BstMBI	GATC	8 cut(s)	486, 711, 758, 1086, 1243, 1843, 1905, 2067
BstNI	CCWGG	5 cut(s)	440, 494, 1701, 1880, 2013
BstNSI	RCATGY	2 cut(s)	943, 2057
BstPI	GGTNACC	1 cut(s)	751
BstSFI	CTRYAG	2 cut(s)	1154, 1311
BstSLI	GKGCMC	2 cut(s)	702, 1296
BstUI	CGCG	7 cut(s)	476, 505, 577, 579, 581, 626, 656
BstV1I	GCAGC	8 cut(s)	94, 334, 898, 1345, 1660, 1672, 1703, 1939
BstV2I	GAAGAC	3 cut(s)	448, 547, 1980
BstX2I	RGATCY	4 cut(s)	486, 758, 1086, 1905
BstYI	RGATCY	4 cut(s)	486, 758, 1086, 1905
BsuRI	GGCC	8 cut(s)	428, 497, 588, 618, 855, 1499, 1618, 2017
BtgI	CCRYGG	1 cut(s)	1653
BtsCI	GGATG	4 cut(s)	516, 714, 1173, 1500
BtsI	GCAGTG	1 cut(s)	1151
BtsIMutI	CAGTG	6 cut(s)	88, 970, 1151, 1563, 1631, 1841
Cac8I	GCNNGC	5 cut(s)	577, 579, 1221, 1276, 1671
Cfr10I	RCCGGY	1 cut(s)	1015
Cfr13I	GGNCC	8 cut(s)	427, 496, 586, 617, 854, 913, 1617, 2015
CseI	GACGC	6 cut(s)	433, 465, 541, 570, 662, 745
Csp6I	GTAC	4 cut(s)	971, 1101, 1946, 2039
CspAI	ACCGGT	1 cut(s)	1015
CspCI	CAANNNNNGTGG	2 cut(s)	1755, 1790
CviAII	CATG	6 cut(s)	661, 940, 1172, 1340, 1654, 2054
CviQI	GTAC	4 cut(s)	971, 1101, 1946, 2039
DdeI	CTNAG	5 cut(s)	1284, 1509, 1613, 1902, 2103
DinI	GGCGCC	2 cut(s)	125, 409
DpnI	GATC	8 cut(s)	488, 713, 760, 1088, 1245, 1845, 1907, 2069
DpnII	GATC	8 cut(s)	486, 711, 758, 1086, 1243, 1843, 1905, 2067
DraI	TTTAAA	1 cut(s)	12
Eam1104I	CTCTTC	3 cut(s)	82, 175, 198
EarI	CTCTTC	3 cut(s)	82, 175, 198
EciI	GGCGGA	2 cut(s)	260, 1457
Ecl136II	GAGCTC	1 cut(s)	1131
Eco130I	CCWWGG	1 cut(s)	1653
Eco24I	GRGCYC	3 cut(s)	399, 1133, 1870
Eco31I	GGTCTC	1 cut(s)	1118
Eco47I	GGWCC	1 cut(s)	913
Eco53kI	GAGCTC	1 cut(s)	1131
Eco57I	CTGAAG	2 cut(s)	1563, 1943
Eco88I	CYCGRG	4 cut(s)	431, 1048, 1115, 1126
Eco91I	GGTNACC	1 cut(s)	751
EcoICRI	GAGCTC	1 cut(s)	1131
EcoNI	CCTNNNNNAGG	1 cut(s)	422
EcoO109I	RGGNCCY	3 cut(s)	427, 496, 1617
EcoO65I	GGTNACC	1 cut(s)	751
EcoRII	CCWGG	5 cut(s)	438, 492, 1699, 1878, 2011
EcoT14I	CCWWGG	1 cut(s)	1653
EcoT22I	ATGCAT	3 cut(s)	605, 727, 1173
EcoT38I	GRGCYC	3 cut(s)	399, 1133, 1870
EgeI	GGCGCC	2 cut(s)	125, 409
EheI	GGCGCC	2 cut(s)	125, 409
ErhI	CCWWGG	1 cut(s)	1653
Esp3I	CGTCTC	1 cut(s)	728
FaeI	CATG	6 cut(s)	664, 943, 1175, 1343, 1657, 2057
FalI	AAGNNNNNCTT	2 cut(s)	1196, 1228
FaqI	GGGAC	2 cut(s)	926, 1132
FatI	CATG	6 cut(s)	660, 939, 1171, 1339, 1653, 2053
FauI	CCCGC	2 cut(s)	542, 710
FblI	GTMKAC	2 cut(s)	847, 1716
FokI	GGATG	4 cut(s)	503, 721, 1180, 1487
FriOI	GRGCYC	3 cut(s)	399, 1133, 1870
FspBI	CTAG	4 cut(s)	833, 945, 1098, 1275
GsaI	CCCAGC	2 cut(s)	365, 1892
GsuI	CTGGAG	4 cut(s)	112, 339, 998, 1283
HaeII	RGCGCY	3 cut(s)	127, 411, 439
HaeIII	GGCC	8 cut(s)	428, 497, 588, 618, 855, 1499, 1618, 2017
HapII	CCGG	9 cut(s)	468, 593, 615, 621, 690, 706, 852, 1016, 1279
HgaI	GACGC	6 cut(s)	433, 465, 541, 570, 662, 745
Hin1I	GRCGYC	5 cut(s)	124, 408, 444, 552, 737
Hin1II	CATG	6 cut(s)	664, 943, 1175, 1343, 1657, 2057
HincII	GTYRAC	5 cut(s)	144, 930, 1539, 1632, 1717
HindII	GTYRAC	5 cut(s)	144, 930, 1539, 1632, 1717
HindIII	AAGCTT	3 cut(s)	1412, 1418, 1935
HinfI	GANTC	4 cut(s)	1004, 1307, 1780, 1898
HpaI	GTTAAC	2 cut(s)	930, 1539
HpaII	CCGG	9 cut(s)	468, 593, 615, 621, 690, 706, 852, 1016, 1279
Hpy166II	GTNNAC	9 cut(s)	62, 144, 848, 930, 1201, 1294, 1539, 1632, 1717
Hpy188I	TCNGA	6 cut(s)	675, 716, 1003, 1135, 1584, 1903
Hpy8I	GTNNAC	9 cut(s)	62, 144, 848, 930, 1201, 1294, 1539, 1632, 1717
Hpy99I	CGWCG	3 cut(s)	481, 586, 656
HpyAV	CCTTC	6 cut(s)	187, 277, 599, 1538, 1543, 1963
HpyCH4III	ACNGT	3 cut(s)	454, 1180, 1626
HpyCH4IV	ACGT	2 cut(s)	525, 2031
HpyCH4V	TGCA	9 cut(s)	111, 603, 725, 886, 1156, 1171, 1294, 1313, 1375
HpyF3I	CTNAG	5 cut(s)	1284, 1509, 1613, 1902, 2103
HpySE526I	ACGT	2 cut(s)	525, 2031
Hsp92I	GRCGYC	5 cut(s)	124, 408, 444, 552, 737
Hsp92II	CATG	6 cut(s)	664, 943, 1175, 1343, 1657, 2057
KasI	GGCGCC	2 cut(s)	123, 407
KpnI	GGTACC	1 cut(s)	1949
KspAI	GTTAAC	2 cut(s)	930, 1539
Kzo9I	GATC	8 cut(s)	486, 711, 758, 1086, 1243, 1843, 1905, 2067
LmnI	GCTCC	9 cut(s)	93, 166, 355, 512, 979, 1075, 1136, 1444, 1649
Lsp1109I	GCAGC	8 cut(s)	94, 334, 898, 1345, 1660, 1672, 1703, 1939
LweI	GCATC	3 cut(s)	712, 1149, 1158
MaeI	CTAG	4 cut(s)	833, 945, 1098, 1275
MaeII	ACGT	2 cut(s)	525, 2031
MalI	GATC	8 cut(s)	488, 713, 760, 1088, 1245, 1845, 1907, 2069
MauBI	CGCGCGCG	1 cut(s)	577
MboI	GATC	8 cut(s)	486, 711, 758, 1086, 1243, 1843, 1905, 2067
MflI	RGATCY	4 cut(s)	486, 758, 1086, 1905
MhlI	GDGCHC	5 cut(s)	399, 702, 1133, 1296, 1870
MluCI	AATT	8 cut(s)	30, 372, 775, 810, 1403, 1460, 1757, 1794
Mly113I	GGCGCC	2 cut(s)	124, 408
MlyI	GAGTC	2 cut(s)	1013, 1907
MmeI	TCCRAC	4 cut(s)	312, 981, 1983, 2007
Mph1103I	ATGCAT	3 cut(s)	605, 727, 1173
MseI	TTAA	6 cut(s)	11, 33, 816, 929, 1416, 1538
MslI	CAYNNNNRTG	1 cut(s)	674
MspA1I	CMGCKG	4 cut(s)	347, 642, 1673, 1952
MspCI	CTTAAG	1 cut(s)	1415
MspI	CCGG	9 cut(s)	468, 593, 615, 621, 690, 706, 852, 1016, 1279
Mva1269I	GAATGC	1 cut(s)	669
MvaI	CCWGG	5 cut(s)	440, 494, 1701, 1880, 2013
MvnI	CGCG	7 cut(s)	476, 505, 577, 579, 581, 626, 656
NarI	GGCGCC	2 cut(s)	124, 408
NciI	CCSGG	5 cut(s)	468, 594, 621, 852, 1280
NcoI	CCATGG	1 cut(s)	1653
NdeII	GATC	8 cut(s)	486, 711, 758, 1086, 1243, 1843, 1905, 2067
NheI	GCTAGC	1 cut(s)	1274
NlaIII	CATG	6 cut(s)	664, 943, 1175, 1343, 1657, 2057
NlaIV	GGNNCC	9 cut(s)	125, 409, 619, 903, 914, 1088, 1619, 1651, 1947
NmeAIII	GCCGAG	1 cut(s)	589
NmuCI	GTSAC	5 cut(s)	322, 445, 1149, 1249, 1960
NsiI	ATGCAT	3 cut(s)	605, 727, 1173
NspI	RCATGY	2 cut(s)	943, 2057
PaeR7I	CTCGAG	2 cut(s)	431, 1048
PauI	GCGCGC	2 cut(s)	575, 577
PciI	ACATGT	1 cut(s)	939
PctI	GAATGC	1 cut(s)	669
PfeI	GAWTC	2 cut(s)	1307, 1780
PflMI	CCANNNNNTGG	2 cut(s)	1759, 2078
PinAI	ACCGGT	1 cut(s)	1015
PleI	GAGTC	2 cut(s)	1012, 1906
PluTI	GGCGCC	2 cut(s)	127, 411
PpsI	GAGTC	2 cut(s)	1012, 1906
PscI	ACATGT	1 cut(s)	939
PsiI	TTATAA	1 cut(s)	1559
Psp124BI	GAGCTC	1 cut(s)	1133
Psp6I	CCWGG	5 cut(s)	438, 492, 1699, 1878, 2011
PspEI	GGTNACC	1 cut(s)	751
PspFI	CCCAGC	2 cut(s)	361, 1888
PspGI	CCWGG	5 cut(s)	438, 492, 1699, 1878, 2011
PspN4I	GGNNCC	9 cut(s)	125, 409, 619, 903, 914, 1088, 1619, 1651, 1947
PspPI	GGNCC	8 cut(s)	427, 496, 586, 617, 854, 913, 1617, 2015
PspXI	VCTCGAGB	2 cut(s)	431, 1048
PstI	CTGCAG	2 cut(s)	1158, 1315
PsuI	RGATCY	4 cut(s)	486, 758, 1086, 1905
PteI	GCGCGC	2 cut(s)	575, 577
PvuII	CAGCTG	2 cut(s)	1673, 1952
RsaI	GTAC	4 cut(s)	972, 1102, 1947, 2040
RsaNI	GTAC	4 cut(s)	971, 1101, 1946, 2039
RseI	CAYNNNNRTG	1 cut(s)	674
SacI	GAGCTC	1 cut(s)	1133
SalI	GTCGAC	1 cut(s)	1715
SaqAI	TTAA	6 cut(s)	11, 33, 816, 929, 1416, 1538
Sau3AI	GATC	8 cut(s)	486, 711, 758, 1086, 1243, 1843, 1905, 2067
Sau96I	GGNCC	8 cut(s)	427, 496, 586, 617, 854, 913, 1617, 2015
ScaI	AGTACT	1 cut(s)	1102
SchI	GAGTC	2 cut(s)	1013, 1907
SduI	GDGCHC	5 cut(s)	399, 702, 1133, 1296, 1870
SfaNI	GCATC	3 cut(s)	712, 1149, 1158
SfcI	CTRYAG	2 cut(s)	1154, 1311
SfoI	GGCGCC	2 cut(s)	125, 409
Sfr274I	CTCGAG	2 cut(s)	431, 1048
SinI	GGWCC	1 cut(s)	913
SlaI	CTCGAG	2 cut(s)	431, 1048
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	4 cut(s)	116, 431, 1048, 1415
SmoI	CTYRAG	4 cut(s)	116, 431, 1048, 1415
SpeI	ACTAGT	1 cut(s)	1097
Sse9I	AATT	8 cut(s)	30, 372, 775, 810, 1403, 1460, 1757, 1794
SspDI	GGCGCC	2 cut(s)	123, 407
SspI	AATATT	1 cut(s)	8
SspMI	CTAG	4 cut(s)	833, 945, 1098, 1275
SstI	GAGCTC	1 cut(s)	1133
StyI	CCWWGG	1 cut(s)	1653
TaaI	ACNGT	3 cut(s)	454, 1180, 1626
TaiI	ACGT	2 cut(s)	528, 2034
TaqI	TCGA	5 cut(s)	432, 479, 1007, 1049, 1716
TasI	AATT	8 cut(s)	30, 372, 775, 810, 1403, 1460, 1757, 1794
TatI	WGTACW	1 cut(s)	1100
TauI	GCSGC	6 cut(s)	474, 552, 563, 1595, 1691, 1988
TfiI	GAWTC	2 cut(s)	1307, 1780
Tru1I	TTAA	6 cut(s)	11, 33, 816, 929, 1416, 1538
Tru9I	TTAA	6 cut(s)	11, 33, 816, 929, 1416, 1538
TscAI	CASTG	6 cut(s)	95, 970, 1158, 1570, 1631, 1841
TseFI	GTSAC	5 cut(s)	322, 445, 1149, 1249, 1960
TseI	GCWGC	8 cut(s)	82, 347, 886, 1333, 1673, 1685, 1691, 1952
Tsp45I	GTSAC	5 cut(s)	322, 445, 1149, 1249, 1960
TspDTI	ATGAA	3 cut(s)	17, 1152, 1760
TspRI	CASTG	6 cut(s)	95, 970, 1158, 1570, 1631, 1841
Van91I	CCANNNNNTGG	2 cut(s)	1759, 2078
Vha464I	CTTAAG	1 cut(s)	1415
VneI	GTGCAC	1 cut(s)	1292
VpaK11BI	GGWCC	1 cut(s)	913
XagI	CCTNNNNNAGG	1 cut(s)	422
XapI	RAATTY	1 cut(s)	1794
XceI	RCATGY	2 cut(s)	943, 2057
XhoI	CTCGAG	2 cut(s)	431, 1048
XmiI	GTMKAC	2 cut(s)	847, 1716
XspI	CTAG	4 cut(s)	833, 945, 1098, 1275
ZrmI	AGTACT	1 cut(s)	1102
Zsp2I	ATGCAT	3 cut(s)	605, 727, 1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.