Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003797

Physical Location & Seq

Genomic Coordinates Forward (+)

18575432 .. 18577336

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGATTATTTGCAAGCTATGCGTCTCCGCGAAGCCAATCGTCTCATGATTGCAAAGTTCAAGAAAGAATCTCCGGCTAATGACTCTCCTGAACAGAGGCTAGTTCGATTGACCAATGAGAATCCGCAATACAATGTCGACTTTTTGTTTCATTCATACTCCAAGGACTGGTTTGTATCCGATGTTGGAATGAAAATGTCAAATGTGATGATTCCAAACCAAATGCTAGCTCTTGACTGTGAAATGGTTCTATGTGAAGATGGGACAGAGGGTGTGGTTAGAGTTGGCGCTGTTGACCGCAATTTAAAGGTGATCCTTGACGAATTTGTGAAACCACACAAACCTGTGGTCGACTATAGGACAGCTATTACTGGAGTTACTGCTGAAGATGTCCAAAAAGCCACTCTCTCTCTGGTGGATATTCAGGAAAAATTGAGGCCGTTTCTTTCTGCTGGTGCAATTTTGATAGATCATCCCATAGTGATTGATACTTCACTAGTATTTAAGTATCCTAATTCACGAAAGCTAAGAAGACCTTCTCTTAATACCCTTTGCATGTCTGTGTTGGGATACGAAGTCCAAAAGGCCGGTGTTTCTCATCACTGCGTACACGATGCAGCCGCTGCGATGAAACTTGCACTTGCTGTTATAAAGAAAAGAGTTGACACAACAATCACATTAACTAAAGAGGCCGAGAAATCAAGACTCTTTCTACATCGAATCCCTCACCATCTGTCATCTGAAGAGCTGAAGAAAGATCTTGCTCTAAAGTTTTTTCCCAAAAACTTTACAATTGATGTTAAGCCAGCAAAAACACAGGGAGGTTATTATTGTGCAGTTGTTATCTTTGGAAGCTCAGTAGAAGCAAATCAAGCATTTGAGAACGTTAATGGATACAAAGAGACGGATTCATCGGGGCTGCCACAGAAACTCATTTCTTGTTCAATATCTACATTTTATGTCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010586 GO:0010587 GO:0016070 GO:0016592 GO:0016787 GO:0016788 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

322

Amino Acids

36.21

Weight (kDa)

8.74

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50090 AT3G50100 AT3G50100 AT5G67240 AT5G67240 AT5G67240 AT5G67240
fragaria_vesca	FvH4_1g16590 FvH4_1g16590 FvH4_4g28290
malus_domestica	MD02G1178000.v1.1 MD15G1287900.v1.1
prunus_persica	Prupe.6G230000_v2.0.a1
pyrus_communis	pycom02g14410 pycom15g25140
rosa_chinensis	RchiOBHm_Chr2g0106501
rosa_laevigata	RLG00000017507
rosa_roxburghii	Rroxscaffold_2G00137120 Rroxscaffold_3G00227560
rosa_rugosa	Rorug02G0135700 Rorug02G0135800 Rorug02G0135900 Rorug02G0136000 Rorug05G0123100 Rorug05G0252900 Rorug05G0347700
rosa_samantha	Rh2AG187300 Rh2BG198100 Rh2BG614000 Rh2CG192300 Rh2DG193400 Rh5BG226200
rosa_wichuraiana	Rw2G014600 Rw2G014620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
AccB7I	CCANNNNNTGG	1 cut(s)	168
AccI	GTMKAC	2 cut(s)	138, 351
AccII	CGCG	1 cut(s)	30
AciI	CCGC	4 cut(s)	28, 125, 298, 621
AclI	AACGTT	1 cut(s)	885
AclWI	GGATC	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	3 cut(s)	405, 762, 770
AfaI	GTAC	1 cut(s)	609
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	61, 945
AhlI	ACTAGT	1 cut(s)	496
AluBI	AGCT	6 cut(s)	17, 230, 365, 526, 748, 855
AluI	AGCT	6 cut(s)	17, 230, 365, 526, 748, 855
Alw26I	GTCTC	3 cut(s)	29, 47, 896
AlwI	GGATC	1 cut(s)	307
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	3 cut(s)	437, 585, 690
ApeKI	GCWGC	3 cut(s)	617, 623, 919
ApoI	RAATTY	1 cut(s)	323
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
Asp700I	GAANNNNTTC	2 cut(s)	246, 535
AspLEI	GCGC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	322, 719
AsuNHI	GCTAGC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	538
BbvI	GCAGC	3 cut(s)	610, 629, 906
BccI	CCATC	2 cut(s)	254, 738
BceAI	ACGGC	1 cut(s)	424
BciVI	GTATCC	4 cut(s)	187, 519, 563, 887
BcoDI	GTCTC	3 cut(s)	29, 47, 896
BcuI	ACTAGT	1 cut(s)	496
BfaI	CTAG	3 cut(s)	101, 227, 497
BfmI	CTRYAG	1 cut(s)	355
BfoI	RGCGCY	1 cut(s)	291
BfuI	GTATCC	4 cut(s)	187, 519, 563, 887
BglII	AGATCT	1 cut(s)	757
BisI	GCNGC	4 cut(s)	618, 621, 624, 920
BlsI	GCNGC	4 cut(s)	619, 622, 625, 921
BmsI	GCATC	1 cut(s)	604
BmtI	GCTAGC	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	538
BpmI	CTGGAG	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse118I	RCCGGY	1 cut(s)	587
Bse1I	ACTGG	2 cut(s)	173, 376
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	870
BseNI	ACTGG	2 cut(s)	173, 376
BseXI	GCAGC	3 cut(s)	610, 629, 906
BsgI	GTGCAG	1 cut(s)	855
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	3 cut(s)	439, 587, 692
BsiSI	CCGG	2 cut(s)	74, 588
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmAI	GTCTC	3 cut(s)	29, 47, 896
BsmBI	CGTCTC	3 cut(s)	29, 47, 896
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	3 cut(s)	439, 587, 692
Bsp143I	GATC	3 cut(s)	312, 469, 757
BspACI	CCGC	4 cut(s)	28, 125, 298, 621
BspANI	GGCC	3 cut(s)	439, 587, 692
BspCNI	CTCAG	1 cut(s)	869
BspFNI	CGCG	1 cut(s)	30
BspHI	TCATGA	1 cut(s)	45
BspOI	GCTAGC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	307
BspQI	GCTCTTC	1 cut(s)	738
BsrFI	RCCGGY	1 cut(s)	587
BsrI	ACTGG	2 cut(s)	173, 376
BssAI	RCCGGY	1 cut(s)	587
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	3 cut(s)	312, 469, 757
BssT1I	CCWWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	738
BstAPI	GCANNNNNTGC	2 cut(s)	19, 623
BstC8I	GCNNGC	3 cut(s)	15, 228, 807
BstDEI	CTNAG	2 cut(s)	527, 856
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	3 cut(s)	315, 472, 760
BstMAI	GTCTC	3 cut(s)	29, 47, 896
BstMBI	GATC	3 cut(s)	312, 469, 757
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 623, 872
BstNSI	RCATGY	1 cut(s)	559
BstSFI	CTRYAG	1 cut(s)	355
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	3 cut(s)	610, 629, 906
BstV2I	GAAGAC	1 cut(s)	538
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
BsuI	GTATCC	4 cut(s)	187, 519, 563, 887
BsuRI	GGCC	3 cut(s)	439, 587, 692
BtgZI	GCGATG	1 cut(s)	641
BtsCI	GGATG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	601
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	3 cut(s)	15, 228, 807
CaiI	CAGNNNCTG	1 cut(s)	623
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	587
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	608
CviAII	CATG	2 cut(s)	46, 556
CviQI	GTAC	1 cut(s)	608
DdeI	CTNAG	2 cut(s)	527, 856
DpnI	GATC	3 cut(s)	314, 471, 759
DpnII	GATC	3 cut(s)	312, 469, 757
DraI	TTTAAA	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	738
EarI	CTCTTC	1 cut(s)	738
Eco130I	CCWWGG	1 cut(s)	162
Eco57I	CTGAAG	3 cut(s)	405, 762, 770
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
Esp3I	CGTCTC	3 cut(s)	29, 47, 896
FaeI	CATG	2 cut(s)	49, 559
FaiI	YATR	9 cut(s)	20, 47, 157, 253, 357, 479, 557, 650, 960
FalI	AAGNNNNNCTT	2 cut(s)	520, 552
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	2 cut(s)	45, 555
FblI	GTMKAC	2 cut(s)	138, 351
Fnu4HI	GCNGC	4 cut(s)	618, 621, 624, 920
FokI	GGATG	1 cut(s)	459
Fsp4HI	GCNGC	4 cut(s)	618, 621, 624, 920
FspBI	CTAG	3 cut(s)	101, 227, 497
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	4 cut(s)	618, 621, 624, 920
GsuI	CTGGAG	1 cut(s)	393
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	439, 587, 692
HapII	CCGG	2 cut(s)	74, 588
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	2 cut(s)	49, 559
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	4 cut(s)	139, 295, 352, 664
HindII	GTYRAC	4 cut(s)	139, 295, 352, 664
HinfI	GANTC	7 cut(s)	68, 83, 121, 211, 705, 720, 908
HpaII	CCGG	2 cut(s)	74, 588
HphI	GGTGA	2 cut(s)	322, 719
Hpy166II	GTNNAC	5 cut(s)	139, 295, 352, 610, 664
Hpy188I	TCNGA	2 cut(s)	181, 742
Hpy188III	TCNNGA	7 cut(s)	46, 61, 89, 233, 425, 519, 702
Hpy8I	GTNNAC	5 cut(s)	139, 295, 352, 610, 664
HpyAV	CCTTC	1 cut(s)	546
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	885
HpyCH4V	TGCA	7 cut(s)	13, 53, 458, 555, 617, 638, 836
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 623, 872
HpyF3I	CTNAG	2 cut(s)	527, 856
HpySE526I	ACGT	1 cut(s)	885
Hsp92II	CATG	2 cut(s)	49, 559
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	312, 469, 757
LguI	GCTCTTC	1 cut(s)	738
Lsp1109I	GCAGC	3 cut(s)	610, 629, 906
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	3 cut(s)	101, 227, 497
MaeII	ACGT	1 cut(s)	885
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	3 cut(s)	314, 471, 759
MboI	GATC	3 cut(s)	312, 469, 757
MboII	GAAGA	5 cut(s)	269, 398, 543, 755, 763
MfeI	CAATTG	1 cut(s)	792
MflI	RGATCY	1 cut(s)	757
MluCI	AATT	6 cut(s)	301, 323, 431, 459, 514, 792
MlyI	GAGTC	2 cut(s)	77, 699
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	6 cut(s)	90, 262, 429, 682, 735, 815
MroXI	GAANNNNTTC	2 cut(s)	246, 535
MseI	TTAA	7 cut(s)	305, 504, 543, 680, 801, 888, 967
MslI	CAYNNNNRTG	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	2 cut(s)	74, 588
MunI	CAATTG	1 cut(s)	792
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	19, 623, 872
NdeII	GATC	3 cut(s)	312, 469, 757
NheI	GCTAGC	1 cut(s)	226
NlaIII	CATG	2 cut(s)	49, 559
NmeAIII	GCCGAG	1 cut(s)	718
NspI	RCATGY	1 cut(s)	559
PagI	TCATGA	1 cut(s)	45
PciSI	GCTCTTC	1 cut(s)	738
PdmI	GAANNNNTTC	2 cut(s)	246, 535
PfeI	GAWTC	5 cut(s)	68, 121, 211, 720, 908
PflMI	CCANNNNNTGG	1 cut(s)	168
PkrI	GCNGC	4 cut(s)	619, 622, 625, 921
PleI	GAGTC	2 cut(s)	77, 699
PpsI	GAGTC	2 cut(s)	77, 699
PsiI	TTATAA	1 cut(s)	650
Psp1406I	AACGTT	1 cut(s)	885
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	757
RsaI	GTAC	1 cut(s)	609
RsaNI	GTAC	1 cut(s)	608
RseI	CAYNNNNRTG	1 cut(s)	560
SalI	GTCGAC	2 cut(s)	137, 350
SapI	GCTCTTC	1 cut(s)	738
SaqAI	TTAA	7 cut(s)	305, 504, 543, 680, 801, 888, 967
SatI	GCNGC	4 cut(s)	618, 621, 624, 920
Sau3AI	GATC	3 cut(s)	312, 469, 757
SchI	GAGTC	2 cut(s)	77, 699
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	560
SpeI	ACTAGT	1 cut(s)	496
Sse9I	AATT	6 cut(s)	301, 323, 431, 459, 514, 792
SsiI	CCGC	4 cut(s)	28, 125, 298, 621
SspMI	CTAG	3 cut(s)	101, 227, 497
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	888
TaqI	TCGA	4 cut(s)	106, 138, 351, 718
TasI	AATT	6 cut(s)	301, 323, 431, 459, 514, 792
TauI	GCSGC	1 cut(s)	623
TfiI	GAWTC	5 cut(s)	68, 121, 211, 720, 908
Tru1I	TTAA	7 cut(s)	305, 504, 543, 680, 801, 888, 967
Tru9I	TTAA	7 cut(s)	305, 504, 543, 680, 801, 888, 967
TscAI	CASTG	1 cut(s)	608
TseI	GCWGC	3 cut(s)	617, 623, 919
TspDTI	ATGAA	5 cut(s)	140, 144, 206, 644, 900
TspGWI	ACGGA	2 cut(s)	920, 953
TspRI	CASTG	1 cut(s)	608
Van91I	CCANNNNNTGG	1 cut(s)	168
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	1 cut(s)	559
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmiI	GTMKAC	2 cut(s)	138, 351
XmnI	GAANNNNTTC	2 cut(s)	246, 535
XspI	CTAG	3 cut(s)	101, 227, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.