Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003797

Physical Location & Seq

Genomic Coordinates Reverse (-)

19490404 .. 19493165

Gene Structure 2762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25140.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGACCTCAAATGCAATGTTTGCTGTTGATTGCGAGATGGTTCTATGTGAAGATGGCTCTGAAGCTTTAGTAAAGGTGTGCGTAGTGGATGCCAATTTACAGGTCAAACTGAATGAATTTGTAAACCCTTGCAAAGAAGTTGCTGATTACAGATCTGAGATTACAGGAGTTTCAGCATCGGATTTGGATGGAATTACATGCACATTGAAGGATATACAGAAACTCTTGAAGAAGTTGTTGTCAGATGGTACTATTTTAGTCGGGCATAGCTTATATAACGACCTGCAAGCACTGAAGTTGGAACATGCCAGGGTGATCGATACTGCATATATCTTCAGATACTCTGATGGACCTATTGATAGAAAACCTTCCTTGAACAATTTGTGTAAGTCTGTATTGGGTTATGAAGTCCGGAAGCAAGGTTCTCCACACAATTGTCTGGATGATGCTTGTGCTGCAATGAAACTAGTTCTTGCTAAGATAAAGGGCGAAGTTGGTGTTGTTTTCCCCCCAGCTCAGGAGGATGTACGTGAAGTTAATATGGCAAAGCTACTTCTGCATAGGATACCAATTACAGTGCCTAGTGAAGAACTGCACAATGTCGTTCCTGGGAACTATACGATACAAGTCAAGCAACCGTCTGTGAAAGCGCAAGGAGATAAATATTCTGCCTTTGCTATCTTTACGAGTCCACAAGAAGCACATCAGGCATATGAAAAAGTCCAAGGCAGCCGGGAGAAGGACTCATGTGGACGGCCCCAGAAACTTGTTGCATTTAAGCTCAGCACAGGTGTAACTGCTGATTTATTCGTTCGTAAAATGGCAAACGTTGATTCCTCTGCCCAAGTCTCATCGAAGAGAGCTTTAGAAGTTGAAGAGAACTCAGGTGTACATAAAAAACAAAAGACAGGTCAGAAAGTAGAAGAGGAGACAACGGCAGAGCTAAATCAGTGCTGCGATCACCTTAAAGAGATGGAAAGGTTGAAGGAAGAACAACAAAAGGCCCTAGACAAGTGTTCTGATCAATTAAAGGAGATTGAAGGACTGAAGCAGCAACTTCAAAATAAAGAGTTTGAAATTTCGACACTGAATAAGATTGTTTCTAAACTCCAAGGGGGCAAGAAAAAAGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010586 GO:0010587 GO:0016070 GO:0016592 GO:0016787 GO:0016788 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T RRM_1

Protein Analysis

379

Amino Acids

41.87

Weight (kDa)

7.05

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50090 AT3G50100 AT3G50100 AT5G67240 AT5G67240 AT5G67240 AT5G67240
fragaria_vesca	FvH4_1g16590 FvH4_1g16590 FvH4_4g28290
malus_domestica	MD02G1178000.v1.1 MD15G1287900.v1.1
prunus_persica	Prupe.6G230000_v2.0.a1
pyrus_communis	pycom02g14410 pycom15g25140
rosa_chinensis	RchiOBHm_Chr2g0106501
rosa_laevigata	RLG00000017507
rosa_roxburghii	Rroxscaffold_2G00137120 Rroxscaffold_3G00227560
rosa_rugosa	Rorug02G0135700 Rorug02G0135800 Rorug02G0135900 Rorug02G0136000 Rorug05G0123100 Rorug05G0252900 Rorug05G0347700
rosa_samantha	Rh2AG187300 Rh2BG198100 Rh2BG614000 Rh2CG192300 Rh2DG193400 Rh5BG226200
rosa_wichuraiana	Rw2G014600 Rw2G014620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	291
AccIII	TCCGGA	1 cut(s)	411
AclI	AACGTT	1 cut(s)	828
AcsI	RAATTY	2 cut(s)	116, 1077
AcuI	CTGAAG	4 cut(s)	81, 314, 319, 1067
AfaI	GTAC	3 cut(s)	250, 528, 891
AfiI	CCNNNNNNNGG	2 cut(s)	517, 739
AgsI	TTSAA	8 cut(s)	208, 229, 376, 875, 985, 1040, 1061, 1076
AhlI	ACTAGT	1 cut(s)	466
AjnI	CCWGG	2 cut(s)	308, 607
AloI	GAACNNNNNNTCC	2 cut(s)	406, 438
AluBI	AGCT	7 cut(s)	65, 270, 515, 550, 781, 863, 943
AluI	AGCT	7 cut(s)	65, 270, 515, 550, 781, 863, 943
Alw26I	GTCTC	2 cut(s)	853, 923
Aor13HI	TCCGGA	1 cut(s)	411
AoxI	GGCC	2 cut(s)	755, 1002
ApeKI	GCWGC	4 cut(s)	455, 729, 954, 1051
ApoI	RAATTY	2 cut(s)	116, 1077
ArsI	GACNNNNNNTTYG	2 cut(s)	895, 927
Asp700I	GAANNNNTTC	1 cut(s)	367
AspLEI	GCGC	1 cut(s)	652
AspS9I	GGNCC	3 cut(s)	350, 756, 1003
AsuC2I	CCSGG	1 cut(s)	734
AsuHPI	GGTGA	2 cut(s)	325, 953
AvaII	GGWCC	1 cut(s)	350
BbvI	GCAGC	4 cut(s)	442, 741, 941, 1063
BccI	CCATC	6 cut(s)	31, 47, 182, 239, 341, 967
BceAI	ACGGC	2 cut(s)	770, 951
BciT130I	CCWGG	2 cut(s)	310, 609
BciVI	GTATCC	1 cut(s)	558
BclI	TGATCA	1 cut(s)	1021
BcnI	CCSGG	1 cut(s)	734
BcoDI	GTCTC	2 cut(s)	853, 923
BcuI	ACTAGT	1 cut(s)	466
BfaI	CTAG	3 cut(s)	467, 582, 1007
BfuAI	ACCTGC	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	558
BglII	AGATCT	1 cut(s)	152
BisI	GCNGC	4 cut(s)	456, 730, 955, 1052
BlpI	GCTNAGC	1 cut(s)	782
BlsI	GCNGC	4 cut(s)	457, 731, 956, 1053
Bme1390I	CCNGG	3 cut(s)	310, 609, 734
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	3 cut(s)	350, 756, 1003
BmiI	GGNNCC	1 cut(s)	758
BmrFI	CCNGG	3 cut(s)	310, 609, 734
BmsI	GCATC	3 cut(s)	79, 185, 436
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
Bpu10I	CCTNAGC	1 cut(s)	516
Bpu1102I	GCTNAGC	1 cut(s)	782
BpuMI	CCSGG	1 cut(s)	734
Bsa29I	ATCGAT	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	530
BsaJI	CCNNGG	4 cut(s)	309, 608, 724, 1111
BsaWI	WCCGGW	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 739
Bse3DI	GCAATG	2 cut(s)	21, 465
BseAI	TCCGGA	1 cut(s)	411
BseBI	CCWGG	2 cut(s)	310, 609
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	4 cut(s)	309, 608, 724, 1111
BseGI	GGATG	4 cut(s)	94, 193, 448, 529
BseLI	CCNNNNNNNGG	2 cut(s)	517, 739
BseMI	GCAATG	2 cut(s)	21, 465
BseMII	CTCAG	4 cut(s)	147, 530, 796, 897
BseRI	GAGGAG	1 cut(s)	941
BseXI	GCAGC	4 cut(s)	442, 741, 941, 1063
BseYI	CCCAGC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	578
BshFI	GGCC	2 cut(s)	757, 1004
BshVI	ATCGAT	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	412, 733
BslI	CCNNNNNNNGG	2 cut(s)	517, 739
BsmAI	GTCTC	2 cut(s)	853, 923
BsnI	GGCC	2 cut(s)	757, 1004
Bsp13I	TCCGGA	1 cut(s)	411
Bsp1407I	TGTACA	1 cut(s)	889
Bsp143I	GATC	4 cut(s)	152, 315, 958, 1021
Bsp1720I	GCTNAGC	1 cut(s)	782
BspANI	GGCC	2 cut(s)	757, 1004
BspCNI	CTCAG	4 cut(s)	148, 529, 795, 896
BspDI	ATCGAT	1 cut(s)	318
BspEI	TCCGGA	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	758
BspMI	ACCTGC	1 cut(s)	291
BsrDI	GCAATG	2 cut(s)	21, 465
BsrGI	TGTACA	1 cut(s)	889
BssECI	CCNNGG	4 cut(s)	309, 608, 724, 1111
BssMI	GATC	4 cut(s)	152, 315, 958, 1021
BssT1I	CCWWGG	2 cut(s)	724, 1111
Bst2UI	CCWGG	2 cut(s)	310, 609
Bst4CI	ACNGT	2 cut(s)	577, 639
Bst6I	CTCTTC	3 cut(s)	851, 870, 918
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstAUI	TGTACA	1 cut(s)	889
BstBAI	YACGTR	1 cut(s)	530
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	5 cut(s)	156, 477, 516, 782, 883
BstF5I	GGATG	4 cut(s)	94, 193, 448, 529
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	4 cut(s)	155, 318, 961, 1024
BstMAI	GTCTC	2 cut(s)	853, 923
BstMBI	GATC	4 cut(s)	152, 315, 958, 1021
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 455, 556, 707
BstNI	CCWGG	2 cut(s)	310, 609
BstNSI	RCATGY	2 cut(s)	201, 308
BstSCI	CCNGG	3 cut(s)	308, 607, 732
BstV1I	GCAGC	4 cut(s)	442, 741, 941, 1063
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
Bsu15I	ATCGAT	1 cut(s)	318
BsuI	GTATCC	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	757, 1004
BsuTUI	ATCGAT	1 cut(s)	318
BtsCI	GGATG	4 cut(s)	94, 193, 448, 529
BtsIMutI	CAGTG	4 cut(s)	290, 582, 956, 1085
BveI	ACCTGC	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	288
CfoI	GCGC	1 cut(s)	652
Cfr13I	GGNCC	3 cut(s)	350, 756, 1003
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	3 cut(s)	249, 527, 890
CviAII	CATG	3 cut(s)	198, 305, 747
CviQI	GTAC	3 cut(s)	249, 527, 890
DdeI	CTNAG	5 cut(s)	156, 477, 516, 782, 883
DpnI	GATC	4 cut(s)	154, 317, 960, 1023
DpnII	GATC	4 cut(s)	152, 315, 958, 1021
Eam1104I	CTCTTC	3 cut(s)	851, 870, 918
EarI	CTCTTC	3 cut(s)	851, 870, 918
Eco130I	CCWWGG	2 cut(s)	724, 1111
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	4 cut(s)	81, 314, 319, 1067
EcoO109I	RGGNCCY	1 cut(s)	1003
EcoRII	CCWGG	2 cut(s)	308, 607
EcoT14I	CCWWGG	2 cut(s)	724, 1111
ErhI	CCWWGG	2 cut(s)	724, 1111
FaeI	CATG	3 cut(s)	201, 308, 750
FatI	CATG	3 cut(s)	197, 304, 746
FauNDI	CATATG	1 cut(s)	712
FbaI	TGATCA	1 cut(s)	1021
Fnu4HI	GCNGC	4 cut(s)	456, 730, 955, 1052
FokI	GGATG	4 cut(s)	101, 200, 455, 536
Fsp4HI	GCNGC	4 cut(s)	456, 730, 955, 1052
FspBI	CTAG	3 cut(s)	467, 582, 1007
GlaI	GCGC	1 cut(s)	651
GluI	GCNGC	4 cut(s)	456, 730, 955, 1052
GsaI	CCCAGC	1 cut(s)	515
HaeIII	GGCC	2 cut(s)	757, 1004
HapII	CCGG	2 cut(s)	412, 733
HhaI	GCGC	1 cut(s)	652
Hin1II	CATG	3 cut(s)	201, 308, 750
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	3 cut(s)	688, 743, 833
HpaII	CCGG	2 cut(s)	412, 733
HphI	GGTGA	2 cut(s)	325, 953
Hpy166II	GTNNAC	4 cut(s)	124, 692, 752, 890
Hpy188I	TCNGA	8 cut(s)	61, 157, 181, 244, 338, 346, 915, 1021
Hpy188III	TCNNGA	4 cut(s)	226, 412, 440, 518
Hpy8I	GTNNAC	4 cut(s)	124, 692, 752, 890
HpyAV	CCTTC	5 cut(s)	202, 378, 733, 979, 1034
HpyCH4III	ACNGT	2 cut(s)	577, 639
HpyCH4IV	ACGT	2 cut(s)	529, 828
HpyCH4V	TGCA	9 cut(s)	14, 132, 201, 286, 326, 458, 559, 595, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 455, 556, 707
HpyF3I	CTNAG	5 cut(s)	156, 477, 516, 782, 883
HpySE526I	ACGT	2 cut(s)	529, 828
Hsp92II	CATG	3 cut(s)	201, 308, 750
HspAI	GCGC	1 cut(s)	650
Kpn2I	TCCGGA	1 cut(s)	411
Ksp22I	TGATCA	1 cut(s)	1021
Kzo9I	GATC	4 cut(s)	152, 315, 958, 1021
Lsp1109I	GCAGC	4 cut(s)	442, 741, 941, 1063
LweI	GCATC	3 cut(s)	79, 185, 436
MaeI	CTAG	3 cut(s)	467, 582, 1007
MaeII	ACGT	2 cut(s)	529, 828
MaeIII	GTNAC	1 cut(s)	793
MalI	GATC	4 cut(s)	154, 317, 960, 1023
MboI	GATC	4 cut(s)	152, 315, 958, 1021
MboII	GAAGA	8 cut(s)	62, 241, 325, 599, 868, 887, 935, 1001
MfeI	CAATTG	1 cut(s)	433
MflI	RGATCY	1 cut(s)	152
MluCI	AATT	8 cut(s)	94, 116, 192, 379, 433, 570, 1025, 1077
MlyI	GAGTC	2 cut(s)	697, 737
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	4 cut(s)	16, 514, 847, 919
MroI	TCCGGA	1 cut(s)	411
MroXI	GAANNNNTTC	1 cut(s)	367
MseI	TTAA	4 cut(s)	537, 777, 966, 1028
MspI	CCGG	2 cut(s)	412, 733
MspR9I	CCNGG	3 cut(s)	310, 609, 734
MunI	CAATTG	1 cut(s)	433
MvaI	CCWGG	2 cut(s)	310, 609
MwoI	GCNNNNNNNGC	4 cut(s)	20, 455, 556, 707
NciI	CCSGG	1 cut(s)	734
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	4 cut(s)	152, 315, 958, 1021
NlaIII	CATG	3 cut(s)	201, 308, 750
NlaIV	GGNNCC	1 cut(s)	758
NspI	RCATGY	2 cut(s)	201, 308
PdmI	GAANNNNTTC	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	833
PkrI	GCNGC	4 cut(s)	457, 731, 956, 1053
PleI	GAGTC	2 cut(s)	696, 737
PpsI	GAGTC	2 cut(s)	696, 737
Ppu21I	YACGTR	1 cut(s)	530
Psp1406I	AACGTT	1 cut(s)	828
Psp6I	CCWGG	2 cut(s)	308, 607
PspFI	CCCAGC	1 cut(s)	511
PspGI	CCWGG	2 cut(s)	308, 607
PspN4I	GGNNCC	1 cut(s)	758
PspPI	GGNCC	3 cut(s)	350, 756, 1003
PsuI	RGATCY	1 cut(s)	152
RsaI	GTAC	3 cut(s)	250, 528, 891
RsaNI	GTAC	3 cut(s)	249, 527, 890
SaqAI	TTAA	4 cut(s)	537, 777, 966, 1028
SatI	GCNGC	4 cut(s)	456, 730, 955, 1052
Sau3AI	GATC	4 cut(s)	152, 315, 958, 1021
Sau96I	GGNCC	3 cut(s)	350, 756, 1003
SchI	GAGTC	2 cut(s)	697, 737
ScrFI	CCNGG	3 cut(s)	310, 609, 734
SfaNI	GCATC	3 cut(s)	79, 185, 436
SinI	GGWCC	1 cut(s)	350
SpeI	ACTAGT	1 cut(s)	466
Sse9I	AATT	8 cut(s)	94, 116, 192, 379, 433, 570, 1025, 1077
SspI	AATATT	1 cut(s)	665
SspMI	CTAG	3 cut(s)	467, 582, 1007
StyD4I	CCNGG	3 cut(s)	308, 607, 732
StyI	CCWWGG	2 cut(s)	724, 1111
TaaI	ACNGT	2 cut(s)	577, 639
TaiI	ACGT	2 cut(s)	532, 831
TaqI	TCGA	3 cut(s)	318, 854, 1082
TasI	AATT	8 cut(s)	94, 116, 192, 379, 433, 570, 1025, 1077
TatI	WGTACW	1 cut(s)	889
TfiI	GAWTC	1 cut(s)	833
Tru1I	TTAA	4 cut(s)	537, 777, 966, 1028
Tru9I	TTAA	4 cut(s)	537, 777, 966, 1028
TscAI	CASTG	4 cut(s)	297, 582, 956, 1092
TseI	GCWGC	4 cut(s)	455, 729, 954, 1051
TspDTI	ATGAA	4 cut(s)	129, 420, 476, 729
TspRI	CASTG	4 cut(s)	297, 582, 956, 1092
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	2 cut(s)	116, 1077
XceI	RCATGY	2 cut(s)	201, 308
XmnI	GAANNNNTTC	1 cut(s)	367
XspI	CTAG	3 cut(s)	467, 582, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.