pycom02g14410

Small RNA degrading nuclease

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
10977051 .. 10981163
4113 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g14410.11

Sequence Viewer

Length: 1728 bp
ATGTTCTGTTTTACTTGTGAGGATCCTTCTTTGGAACATAGGCTAAACCCTATATACGAAAAACCAAAAACCCTCCCAGTACCCTTTGTTTTTTTCACCAGCCGCCCGCCACACGAACTTTGCGCCGTTGCTCTCCGCCTTGAATTTGGTCGTCACCGGAAAATGCCTCCAATGGATGATTTATTCGCCACCGCAGAGAAAAAGGTTCTTGTGGAAATTGTGAAATTGGCCCAAAAGAGAGGAATGAAGGGTGATAAAGGAGACTGGAAGCAGTTTTTAAGTAGTTATGATAAGAAGTTTGGGGCTAGCTTGAGTGATCCCGGGAGGCGGTCTAATGACGTGTTGACTGCATTTTTAAAGACATTGAACAATGAGGATGATTTGAAGGTTTTGGCTAAAGTTGTCCAATGCCATACAAATCGCCAAGCTGTTGAGCAATTGTTAAAGAATTTTCCGGAAAATGAATCCCCAGAGCAGAAGCTTGTCCGTGCAACTCTGGAACACCCACAATATCCATTGGATTACTCGTTCGTATCAAATGATCAGGATTGGGTAGCTACAAAGCTAGGTAAAAAGTCTAAGATGATGACCTCAAGTGCAATGGTTGCTGTTGATTGTGAGATGGTTCTATGTGAAGATGGCTCTGAAGCTTTAGTAAAGGTGTGCGTTGTGGATGCAGATTTACAGGTCAAACTGAATGAATTTGTAAACCCTTGCAAAGAAGTTGCTGACTACAGATCTGAGATTACAGGAGTTTCAGTAGCCGATTTGGATGGAGTTACATGCACATTGAAGGATATACAGAAACGCTTGAAGAAGTTGTTGTCAGATGGTACTATTTTAGTGGGGCATAGCTTATGCAATGACCTGCAAGCATTGAAGTTGGAACATGTCAGAGTGATTGATACTGCATATATCTTCCAATACTCTGATGGCCCTATCCATAGAAAACCTTCCTTAAATAATTTGTGTAAGTCTGTATTGGGTTCTGAAGTCCGGAAGCAAGGTTCTCCACACAATTGTCTAGATGATGCTCGTGCTGCAATGAAACTTGTTCTTGCTAAGATAAAGGGCGAAGTTGGCTTTATTGCTCCCCCAGCTCAGGAGGATGTACGGGAAGTTAATATGGCAAGGCTACTTCTCCACAGGATACCAATAACAGTGCCTAGTGAAGAACTGCACAATGTCATTCCCGGGAACTATACGATACAAGTCAAGCAACCATCTGTGAAAGCGCAAGGAGATAAATATTCTGCCTTTGCTATCTTTACGAGTCCACAAGAAGCACATCAGGCATATGAAAAAGTCCAAGGCAGCCAGGAGAAGGACTCATGTGGACGGCCCCAGAAACTTGTTGCATTTAAGCTCAGCACTGGTGTAACTGCTGATTTATTCGTTCGTAAAATGGCAAACATTGATTCCTCTGCCCTAGTCTCATCTAAGAGAGCTTTAGAAGTTGAAGAGAACTCAGGGGTACATAAGAAACAAAAGACAGGTCAAAAAATAGAAGACAAGACGGGGACAGAGCTAAATCAGTGCTGCGATCACCTTAAAGAGATGGAACGGTTGAAGCAAGAACAGCAGAAGGCCACAGAGAAGTGTTCTGATCAATTAAAAGAGATCGAAGGACTGAAGCAGCAACTCCAAAATAAAGAGTTTGAAATTTCTACGCTGAATAAGATTGTTTCCAAACTCCAAGGGGGCAAGAAAAAGGGAAGTAGACTTTAG

Protein Analysis

576

Amino Acids

64.41

Weight (kDa)

8.58

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 876
AccI GTMKAC 1 cut(s) 1720
AccIII TCCGGA 2 cut(s) 454, 996
AciI CCGC 5 cut(s) 103, 107, 136, 192, 328
AclWI GGATC 3 cut(s) 17, 30, 311
AcsI RAATTY 4 cut(s) 143, 448, 701, 1662
AcuI CTGAAG 3 cut(s) 666, 1011, 1652
AfaI GTAC 4 cut(s) 81, 835, 1113, 1476
AfiI CCNNNNNNNGG 3 cut(s) 327, 1102, 1324
AflIII ACRYGT 2 cut(s) 339, 889
AgsI TTSAA 9 cut(s) 143, 367, 385, 793, 814, 880, 1460, 1570, 1661
AjiI CACGTC 1 cut(s) 340
AjnI CCWGG 1 cut(s) 1317
AloI GAACNNNNNNTCC 4 cut(s) 512, 544, 991, 1023
Alw26I GTCTC 2 cut(s) 255, 1438
AlwI GGATC 3 cut(s) 17, 30, 311
Ama87I CYCGRG 2 cut(s) 320, 1193
Aor13HI TCCGGA 2 cut(s) 454, 996
AoxI GGCC 4 cut(s) 228, 934, 1340, 1587
ApeKI GCWGC 4 cut(s) 1040, 1314, 1539, 1636
ApoI RAATTY 4 cut(s) 143, 448, 701, 1662
ArsI GACNNNNNNTTYG 2 cut(s) 1480, 1512
Asp700I GAANNNNTTC 1 cut(s) 952
AspLEI GCGC 2 cut(s) 125, 1237
AspS9I GGNCC 3 cut(s) 229, 935, 1341
AsuC2I CCSGG 4 cut(s) 321, 322, 1194, 1195
AsuHPI GGTGA 4 cut(s) 88, 146, 263, 1538
AsuNHI GCTAGC 1 cut(s) 305
AvaI CYCGRG 2 cut(s) 320, 1193
BamHI GGATCC 1 cut(s) 22
BauI CACGAG 1 cut(s) 1035
BbsI GAAGAC 1 cut(s) 1515
BbvI GCAGC 4 cut(s) 1027, 1326, 1526, 1648
BccI CCATC 7 cut(s) 616, 632, 767, 824, 926, 1231, 1552
BceAI ACGGC 2 cut(s) 110, 1355
BciT130I CCWGG 1 cut(s) 1319
BciVI GTATCC 1 cut(s) 1143
BclI TGATCA 2 cut(s) 541, 1606
BcnI CCSGG 4 cut(s) 321, 322, 1194, 1195
BcoDI GTCTC 2 cut(s) 255, 1438
BfaI CTAG 5 cut(s) 306, 566, 1025, 1167, 1430
BfmI CTRYAG 1 cut(s) 733
BfuAI ACCTGC 1 cut(s) 876
BfuI GTATCC 1 cut(s) 1143
BglII AGATCT 1 cut(s) 737
BisI GCNGC 5 cut(s) 103, 1041, 1315, 1540, 1637
BlpI GCTNAGC 1 cut(s) 1367
BlsI GCNGC 5 cut(s) 104, 1042, 1316, 1541, 1638
Bme1390I CCNGG 5 cut(s) 321, 322, 1194, 1195, 1319
BmeT110I CYCGRG 2 cut(s) 320, 1193
BmgBI CACGTC 1 cut(s) 340
BmgT120I GGNCC 3 cut(s) 229, 935, 1341
BmiI GGNNCC 2 cut(s) 24, 1343
BmrFI CCNGG 5 cut(s) 321, 322, 1194, 1195, 1319
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 664, 1021
BmtI GCTAGC 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 1515
BplI GAGNNNNNCTC 2 cut(s) 1313, 1345
Bpu10I CCTNAGC 1 cut(s) 1101
Bpu1102I GCTNAGC 1 cut(s) 1367
BpuEI CTTGAG 2 cut(s) 331, 577
BpuMI CCSGG 4 cut(s) 321, 322, 1194, 1195
BsaJI CCNNGG 4 cut(s) 320, 1193, 1309, 1696
BsaWI WCCGGW 3 cut(s) 156, 454, 996
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 3 cut(s) 327, 1102, 1324
Bse1I ACTGG 3 cut(s) 77, 269, 1378
Bse3DI GCAATG 3 cut(s) 606, 868, 1050
BseAI TCCGGA 2 cut(s) 454, 996
BseBI CCWGG 1 cut(s) 1319
BseDI CCNNGG 4 cut(s) 320, 1193, 1309, 1696
BseGI GGATG 5 cut(s) 181, 382, 679, 778, 1114
BseLI CCNNNNNNNGG 3 cut(s) 327, 1102, 1324
BseMI GCAATG 3 cut(s) 606, 868, 1050
BseMII CTCAG 4 cut(s) 732, 1115, 1381, 1482
BseNI ACTGG 3 cut(s) 77, 269, 1378
BseXI GCAGC 4 cut(s) 1027, 1326, 1526, 1648
BseYI CCCAGC 1 cut(s) 1096
BsgI GTGCAG 1 cut(s) 1163
BshFI GGCC 4 cut(s) 230, 936, 1342, 1589
BsiHKCI CYCGRG 2 cut(s) 320, 1193
BsiSI CCGG 5 cut(s) 157, 321, 455, 997, 1194
BslFI GGGAC 1 cut(s) 1534
BslI CCNNNNNNNGG 3 cut(s) 327, 1102, 1324
BsmAI GTCTC 2 cut(s) 255, 1438
BsmFI GGGAC 1 cut(s) 1534
BsnI GGCC 4 cut(s) 230, 936, 1342, 1589
BsoBI CYCGRG 2 cut(s) 320, 1193
Bsp13I TCCGGA 2 cut(s) 454, 996
Bsp143I GATC 7 cut(s) 22, 316, 541, 737, 1543, 1606, 1620
Bsp1720I GCTNAGC 1 cut(s) 1367
BspACI CCGC 5 cut(s) 103, 107, 136, 192, 328
BspANI GGCC 4 cut(s) 230, 936, 1342, 1589
BspCNI CTCAG 4 cut(s) 733, 1114, 1380, 1481
BspEI TCCGGA 2 cut(s) 454, 996
BspLI GGNNCC 2 cut(s) 24, 1343
BspMI ACCTGC 1 cut(s) 876
BspOI GCTAGC 1 cut(s) 309
BspPI GGATC 3 cut(s) 17, 30, 311
BsrDI GCAATG 3 cut(s) 606, 868, 1050
BsrI ACTGG 3 cut(s) 77, 269, 1378
BssECI CCNNGG 4 cut(s) 320, 1193, 1309, 1696
BssMI GATC 7 cut(s) 22, 316, 541, 737, 1543, 1606, 1620
BssSI CACGAG 1 cut(s) 1035
BssT1I CCWWGG 2 cut(s) 1309, 1696
Bst2BI CACGAG 1 cut(s) 1035
Bst2UI CCWGG 1 cut(s) 1319
Bst4CI ACNGT 2 cut(s) 1162, 1566
Bst6I CTCTTC 1 cut(s) 1455
BstAPI GCANNNNNTGC 1 cut(s) 605
BstC8I GCNNGC 3 cut(s) 107, 307, 873
BstDEI CTNAG 7 cut(s) 579, 741, 1062, 1101, 1367, 1440, 1468
BstF5I GGATG 5 cut(s) 181, 382, 679, 778, 1114
BstHHI GCGC 2 cut(s) 125, 1237
BstKTI GATC 7 cut(s) 25, 319, 544, 740, 1546, 1609, 1623
BstMAI GTCTC 2 cut(s) 255, 1438
BstMBI GATC 7 cut(s) 22, 316, 541, 737, 1543, 1606, 1620
BstMWI GCNNNNNNNGC 6 cut(s) 605, 1040, 1080, 1097, 1292, 1579
BstNI CCWGG 1 cut(s) 1319
BstNSI RCATGY 2 cut(s) 786, 893
BstSCI CCNGG 5 cut(s) 319, 320, 1192, 1193, 1317
BstSFI CTRYAG 1 cut(s) 733
BstV1I GCAGC 4 cut(s) 1027, 1326, 1526, 1648
BstV2I GAAGAC 1 cut(s) 1515
BstX2I RGATCY 2 cut(s) 22, 737
BstYI RGATCY 2 cut(s) 22, 737
BsuI GTATCC 1 cut(s) 1143
BsuRI GGCC 4 cut(s) 230, 936, 1342, 1589
BtrI CACGTC 1 cut(s) 340
BtsCI GGATG 5 cut(s) 181, 382, 679, 778, 1114
BtsIMutI CAGTG 3 cut(s) 1167, 1371, 1541
BveI ACCTGC 1 cut(s) 876
Cac8I GCNNGC 3 cut(s) 107, 307, 873
CfoI GCGC 2 cut(s) 125, 1237
Cfr13I GGNCC 3 cut(s) 229, 935, 1341
Cfr9I CCCGGG 2 cut(s) 320, 1193
Csp6I GTAC 4 cut(s) 80, 834, 1112, 1475
CviAII CATG 3 cut(s) 783, 890, 1332
CviQI GTAC 4 cut(s) 80, 834, 1112, 1475
DdeI CTNAG 7 cut(s) 579, 741, 1062, 1101, 1367, 1440, 1468
DpnI GATC 7 cut(s) 24, 318, 543, 739, 1545, 1608, 1622
DpnII GATC 7 cut(s) 22, 316, 541, 737, 1543, 1606, 1620
DraI TTTAAA 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 1455
EarI CTCTTC 1 cut(s) 1455
EciI GGCGGA 1 cut(s) 125
Eco130I CCWWGG 2 cut(s) 1309, 1696
Eco57I CTGAAG 3 cut(s) 666, 1011, 1652
Eco88I CYCGRG 2 cut(s) 320, 1193
EcoRII CCWGG 1 cut(s) 1317
EcoT14I CCWWGG 2 cut(s) 1309, 1696
ErhI CCWWGG 2 cut(s) 1309, 1696
FaeI CATG 3 cut(s) 786, 893, 1335
FaqI GGGAC 1 cut(s) 1534
FatI CATG 3 cut(s) 782, 889, 1331
FauI CCCGC 1 cut(s) 114
FauNDI CATATG 1 cut(s) 1297
FbaI TGATCA 2 cut(s) 541, 1606
FblI GTMKAC 1 cut(s) 1720
Fnu4HI GCNGC 5 cut(s) 103, 1041, 1315, 1540, 1637
FokI GGATG 5 cut(s) 188, 389, 686, 785, 1121
Fsp4HI GCNGC 5 cut(s) 103, 1041, 1315, 1540, 1637
FspBI CTAG 5 cut(s) 306, 566, 1025, 1167, 1430
GlaI GCGC 2 cut(s) 124, 1236
GluI GCNGC 5 cut(s) 103, 1041, 1315, 1540, 1637
GsaI CCCAGC 1 cut(s) 1100
HaeIII GGCC 4 cut(s) 230, 936, 1342, 1589
HapII CCGG 5 cut(s) 157, 321, 455, 997, 1194
HhaI GCGC 2 cut(s) 125, 1237
Hin1II CATG 3 cut(s) 786, 893, 1335
Hin6I GCGC 2 cut(s) 123, 1235
HinP1I GCGC 2 cut(s) 123, 1235
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HindIII AAGCTT 2 cut(s) 479, 648
HinfI GANTC 4 cut(s) 464, 1273, 1328, 1418
HpaII CCGG 5 cut(s) 157, 321, 455, 997, 1194
HphI GGTGA 4 cut(s) 88, 146, 263, 1538
Hpy166II GTNNAC 5 cut(s) 345, 709, 1277, 1337, 1721
Hpy188I TCNGA 7 cut(s) 646, 742, 829, 896, 931, 991, 1606
Hpy188III TCNNGA 6 cut(s) 455, 497, 545, 997, 1025, 1103
Hpy8I GTNNAC 5 cut(s) 345, 709, 1277, 1337, 1721
HpyAV CCTTC 8 cut(s) 36, 241, 379, 787, 963, 1318, 1579, 1619
HpyCH4III ACNGT 2 cut(s) 1162, 1566
HpyCH4IV ACGT 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 6 cut(s) 605, 1040, 1080, 1097, 1292, 1579
HpyF3I CTNAG 7 cut(s) 579, 741, 1062, 1101, 1367, 1440, 1468
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 3 cut(s) 786, 893, 1335
HspAI GCGC 2 cut(s) 123, 1235
Kpn2I TCCGGA 2 cut(s) 454, 996
Ksp22I TGATCA 2 cut(s) 541, 1606
Kzo9I GATC 7 cut(s) 22, 316, 541, 737, 1543, 1606, 1620
LmnI GCTCC 1 cut(s) 1096
Lsp1109I GCAGC 4 cut(s) 1027, 1326, 1526, 1648
LweI GCATC 2 cut(s) 664, 1021
MaeI CTAG 5 cut(s) 306, 566, 1025, 1167, 1430
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 3 cut(s) 152, 778, 1378
MalI GATC 7 cut(s) 24, 318, 543, 739, 1545, 1608, 1622
MboI GATC 7 cut(s) 22, 316, 541, 737, 1543, 1606, 1620
MboII GAAGA 6 cut(s) 647, 826, 910, 1184, 1472, 1520
MfeI CAATTG 2 cut(s) 437, 1018
MflI RGATCY 2 cut(s) 22, 737
MlyI GAGTC 2 cut(s) 1282, 1322
MmeI TCCRAC 1 cut(s) 864
MnlI CCTC 9 cut(s) 13, 83, 177, 233, 318, 367, 601, 1099, 1432
MroI TCCGGA 2 cut(s) 454, 996
MroXI GAANNNNTTC 1 cut(s) 952
MseI TTAA 8 cut(s) 278, 356, 443, 959, 1122, 1362, 1551, 1613
MspI CCGG 5 cut(s) 157, 321, 455, 997, 1194
MspR9I CCNGG 5 cut(s) 321, 322, 1194, 1195, 1319
MunI CAATTG 2 cut(s) 437, 1018
MvaI CCWGG 1 cut(s) 1319
MwoI GCNNNNNNNGC 6 cut(s) 605, 1040, 1080, 1097, 1292, 1579
NciI CCSGG 4 cut(s) 321, 322, 1194, 1195
NdeI CATATG 1 cut(s) 1297
NdeII GATC 7 cut(s) 22, 316, 541, 737, 1543, 1606, 1620
NheI GCTAGC 1 cut(s) 305
NlaIII CATG 3 cut(s) 786, 893, 1335
NlaIV GGNNCC 2 cut(s) 24, 1343
NmuCI GTSAC 1 cut(s) 152
NspI RCATGY 2 cut(s) 786, 893
PciI ACATGT 1 cut(s) 889
PdmI GAANNNNTTC 1 cut(s) 952
PfeI GAWTC 2 cut(s) 464, 1418
PkrI GCNGC 5 cut(s) 104, 1042, 1316, 1541, 1638
PleI GAGTC 2 cut(s) 1281, 1322
PpsI GAGTC 2 cut(s) 1281, 1322
PscI ACATGT 1 cut(s) 889
Psp6I CCWGG 1 cut(s) 1317
PspFI CCCAGC 1 cut(s) 1096
PspGI CCWGG 1 cut(s) 1317
PspN4I GGNNCC 2 cut(s) 24, 1343
PspPI GGNCC 3 cut(s) 229, 935, 1341
PsuI RGATCY 2 cut(s) 22, 737
RsaI GTAC 4 cut(s) 81, 835, 1113, 1476
RsaNI GTAC 4 cut(s) 80, 834, 1112, 1475
SaqAI TTAA 8 cut(s) 278, 356, 443, 959, 1122, 1362, 1551, 1613
SatI GCNGC 5 cut(s) 103, 1041, 1315, 1540, 1637
Sau3AI GATC 7 cut(s) 22, 316, 541, 737, 1543, 1606, 1620
Sau96I GGNCC 3 cut(s) 229, 935, 1341
SchI GAGTC 2 cut(s) 1282, 1322
ScrFI CCNGG 5 cut(s) 321, 322, 1194, 1195, 1319
SfaNI GCATC 2 cut(s) 664, 1021
SfcI CTRYAG 1 cut(s) 733
SmaI CCCGGG 2 cut(s) 322, 1195
SmlI CTYRAG 2 cut(s) 310, 592
SmoI CTYRAG 2 cut(s) 310, 592
SsiI CCGC 5 cut(s) 103, 107, 136, 192, 328
SspI AATATT 1 cut(s) 1250
SspMI CTAG 5 cut(s) 306, 566, 1025, 1167, 1430
StyD4I CCNGG 5 cut(s) 319, 320, 1192, 1193, 1317
StyI CCWWGG 2 cut(s) 1309, 1696
TaaI ACNGT 2 cut(s) 1162, 1566
TaiI ACGT 1 cut(s) 342
TaqI TCGA 1 cut(s) 1623
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 2 cut(s) 464, 1418
Tru1I TTAA 8 cut(s) 278, 356, 443, 959, 1122, 1362, 1551, 1613
Tru9I TTAA 8 cut(s) 278, 356, 443, 959, 1122, 1362, 1551, 1613
TscAI CASTG 3 cut(s) 1167, 1378, 1541
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 4 cut(s) 1040, 1314, 1539, 1636
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 5 cut(s) 260, 477, 714, 1061, 1314
TspGWI ACGGA 1 cut(s) 476
TspMI CCCGGG 2 cut(s) 320, 1193
TspRI CASTG 3 cut(s) 1167, 1378, 1541
XapI RAATTY 4 cut(s) 143, 448, 701, 1662
XbaI TCTAGA 1 cut(s) 1024
XceI RCATGY 2 cut(s) 786, 893
XcmI CCANNNNNNNNNTGG 1 cut(s) 929
XmaI CCCGGG 2 cut(s) 320, 1193
XmiI GTMKAC 1 cut(s) 1720
XmnI GAANNNNTTC 1 cut(s) 952
XspI CTAG 5 cut(s) 306, 566, 1025, 1167, 1430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.