Small RNA degrading nuclease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G50090 AT3G50100 AT3G50100 AT5G67240 AT5G67240 AT5G67240 AT5G67240 |
| fragaria_vesca | FvH4_1g16590 FvH4_1g16590 FvH4_4g28290 |
| malus_domestica | MD02G1178000.v1.1 MD15G1287900.v1.1 |
| prunus_persica | Prupe.6G230000_v2.0.a1 |
| pyrus_communis | pycom02g14410 pycom15g25140 |
| rosa_chinensis | RchiOBHm_Chr2g0106501 |
| rosa_laevigata | RLG00000017507 |
| rosa_roxburghii | Rroxscaffold_2G00137120 Rroxscaffold_3G00227560 |
| rosa_rugosa | Rorug02G0135700 Rorug02G0135800 Rorug02G0135900 Rorug02G0136000 Rorug05G0123100 Rorug05G0252900 Rorug05G0347700 |
| rosa_samantha | Rh2AG187300 Rh2BG198100 Rh2BG614000 Rh2CG192300 Rh2DG193400 Rh5BG226200 |
| rosa_wichuraiana | Rw2G014600 Rw2G014620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 876 |
| AccI | GTMKAC | 1 cut(s) | 1720 |
| AccIII | TCCGGA | 2 cut(s) | 454, 996 |
| AciI | CCGC | 5 cut(s) | 103, 107, 136, 192, 328 |
| AclWI | GGATC | 3 cut(s) | 17, 30, 311 |
| AcsI | RAATTY | 4 cut(s) | 143, 448, 701, 1662 |
| AcuI | CTGAAG | 3 cut(s) | 666, 1011, 1652 |
| AfaI | GTAC | 4 cut(s) | 81, 835, 1113, 1476 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 327, 1102, 1324 |
| AflIII | ACRYGT | 2 cut(s) | 339, 889 |
| AgsI | TTSAA | 9 cut(s) | 143, 367, 385, 793, 814, 880, 1460, 1570, 1661 |
| AjiI | CACGTC | 1 cut(s) | 340 |
| AjnI | CCWGG | 1 cut(s) | 1317 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 512, 544, 991, 1023 |
| Alw26I | GTCTC | 2 cut(s) | 255, 1438 |
| AlwI | GGATC | 3 cut(s) | 17, 30, 311 |
| Ama87I | CYCGRG | 2 cut(s) | 320, 1193 |
| Aor13HI | TCCGGA | 2 cut(s) | 454, 996 |
| AoxI | GGCC | 4 cut(s) | 228, 934, 1340, 1587 |
| ApeKI | GCWGC | 4 cut(s) | 1040, 1314, 1539, 1636 |
| ApoI | RAATTY | 4 cut(s) | 143, 448, 701, 1662 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1480, 1512 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 952 |
| AspLEI | GCGC | 2 cut(s) | 125, 1237 |
| AspS9I | GGNCC | 3 cut(s) | 229, 935, 1341 |
| AsuC2I | CCSGG | 4 cut(s) | 321, 322, 1194, 1195 |
| AsuHPI | GGTGA | 4 cut(s) | 88, 146, 263, 1538 |
| AsuNHI | GCTAGC | 1 cut(s) | 305 |
| AvaI | CYCGRG | 2 cut(s) | 320, 1193 |
| BamHI | GGATCC | 1 cut(s) | 22 |
| BauI | CACGAG | 1 cut(s) | 1035 |
| BbsI | GAAGAC | 1 cut(s) | 1515 |
| BbvI | GCAGC | 4 cut(s) | 1027, 1326, 1526, 1648 |
| BccI | CCATC | 7 cut(s) | 616, 632, 767, 824, 926, 1231, 1552 |
| BceAI | ACGGC | 2 cut(s) | 110, 1355 |
| BciT130I | CCWGG | 1 cut(s) | 1319 |
| BciVI | GTATCC | 1 cut(s) | 1143 |
| BclI | TGATCA | 2 cut(s) | 541, 1606 |
| BcnI | CCSGG | 4 cut(s) | 321, 322, 1194, 1195 |
| BcoDI | GTCTC | 2 cut(s) | 255, 1438 |
| BfaI | CTAG | 5 cut(s) | 306, 566, 1025, 1167, 1430 |
| BfmI | CTRYAG | 1 cut(s) | 733 |
| BfuAI | ACCTGC | 1 cut(s) | 876 |
| BfuI | GTATCC | 1 cut(s) | 1143 |
| BglII | AGATCT | 1 cut(s) | 737 |
| BisI | GCNGC | 5 cut(s) | 103, 1041, 1315, 1540, 1637 |
| BlpI | GCTNAGC | 1 cut(s) | 1367 |
| BlsI | GCNGC | 5 cut(s) | 104, 1042, 1316, 1541, 1638 |
| Bme1390I | CCNGG | 5 cut(s) | 321, 322, 1194, 1195, 1319 |
| BmeT110I | CYCGRG | 2 cut(s) | 320, 1193 |
| BmgBI | CACGTC | 1 cut(s) | 340 |
| BmgT120I | GGNCC | 3 cut(s) | 229, 935, 1341 |
| BmiI | GGNNCC | 2 cut(s) | 24, 1343 |
| BmrFI | CCNGG | 5 cut(s) | 321, 322, 1194, 1195, 1319 |
| BmrI | ACTGGG | 1 cut(s) | 71 |
| BmsI | GCATC | 2 cut(s) | 664, 1021 |
| BmtI | GCTAGC | 1 cut(s) | 309 |
| BmuI | ACTGGG | 1 cut(s) | 71 |
| BpiI | GAAGAC | 1 cut(s) | 1515 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1313, 1345 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1101 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1367 |
| BpuEI | CTTGAG | 2 cut(s) | 331, 577 |
| BpuMI | CCSGG | 4 cut(s) | 321, 322, 1194, 1195 |
| BsaJI | CCNNGG | 4 cut(s) | 320, 1193, 1309, 1696 |
| BsaWI | WCCGGW | 3 cut(s) | 156, 454, 996 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 744, 774 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 327, 1102, 1324 |
| Bse1I | ACTGG | 3 cut(s) | 77, 269, 1378 |
| Bse3DI | GCAATG | 3 cut(s) | 606, 868, 1050 |
| BseAI | TCCGGA | 2 cut(s) | 454, 996 |
| BseBI | CCWGG | 1 cut(s) | 1319 |
| BseDI | CCNNGG | 4 cut(s) | 320, 1193, 1309, 1696 |
| BseGI | GGATG | 5 cut(s) | 181, 382, 679, 778, 1114 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 327, 1102, 1324 |
| BseMI | GCAATG | 3 cut(s) | 606, 868, 1050 |
| BseMII | CTCAG | 4 cut(s) | 732, 1115, 1381, 1482 |
| BseNI | ACTGG | 3 cut(s) | 77, 269, 1378 |
| BseXI | GCAGC | 4 cut(s) | 1027, 1326, 1526, 1648 |
| BseYI | CCCAGC | 1 cut(s) | 1096 |
| BsgI | GTGCAG | 1 cut(s) | 1163 |
| BshFI | GGCC | 4 cut(s) | 230, 936, 1342, 1589 |
| BsiHKCI | CYCGRG | 2 cut(s) | 320, 1193 |
| BsiSI | CCGG | 5 cut(s) | 157, 321, 455, 997, 1194 |
| BslFI | GGGAC | 1 cut(s) | 1534 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 327, 1102, 1324 |
| BsmAI | GTCTC | 2 cut(s) | 255, 1438 |
| BsmFI | GGGAC | 1 cut(s) | 1534 |
| BsnI | GGCC | 4 cut(s) | 230, 936, 1342, 1589 |
| BsoBI | CYCGRG | 2 cut(s) | 320, 1193 |
| Bsp13I | TCCGGA | 2 cut(s) | 454, 996 |
| Bsp143I | GATC | 7 cut(s) | 22, 316, 541, 737, 1543, 1606, 1620 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1367 |
| BspACI | CCGC | 5 cut(s) | 103, 107, 136, 192, 328 |
| BspANI | GGCC | 4 cut(s) | 230, 936, 1342, 1589 |
| BspCNI | CTCAG | 4 cut(s) | 733, 1114, 1380, 1481 |
| BspEI | TCCGGA | 2 cut(s) | 454, 996 |
| BspLI | GGNNCC | 2 cut(s) | 24, 1343 |
| BspMI | ACCTGC | 1 cut(s) | 876 |
| BspOI | GCTAGC | 1 cut(s) | 309 |
| BspPI | GGATC | 3 cut(s) | 17, 30, 311 |
| BsrDI | GCAATG | 3 cut(s) | 606, 868, 1050 |
| BsrI | ACTGG | 3 cut(s) | 77, 269, 1378 |
| BssECI | CCNNGG | 4 cut(s) | 320, 1193, 1309, 1696 |
| BssMI | GATC | 7 cut(s) | 22, 316, 541, 737, 1543, 1606, 1620 |
| BssSI | CACGAG | 1 cut(s) | 1035 |
| BssT1I | CCWWGG | 2 cut(s) | 1309, 1696 |
| Bst2BI | CACGAG | 1 cut(s) | 1035 |
| Bst2UI | CCWGG | 1 cut(s) | 1319 |
| Bst4CI | ACNGT | 2 cut(s) | 1162, 1566 |
| Bst6I | CTCTTC | 1 cut(s) | 1455 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 605 |
| BstC8I | GCNNGC | 3 cut(s) | 107, 307, 873 |
| BstDEI | CTNAG | 7 cut(s) | 579, 741, 1062, 1101, 1367, 1440, 1468 |
| BstF5I | GGATG | 5 cut(s) | 181, 382, 679, 778, 1114 |
| BstHHI | GCGC | 2 cut(s) | 125, 1237 |
| BstKTI | GATC | 7 cut(s) | 25, 319, 544, 740, 1546, 1609, 1623 |
| BstMAI | GTCTC | 2 cut(s) | 255, 1438 |
| BstMBI | GATC | 7 cut(s) | 22, 316, 541, 737, 1543, 1606, 1620 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 605, 1040, 1080, 1097, 1292, 1579 |
| BstNI | CCWGG | 1 cut(s) | 1319 |
| BstNSI | RCATGY | 2 cut(s) | 786, 893 |
| BstSCI | CCNGG | 5 cut(s) | 319, 320, 1192, 1193, 1317 |
| BstSFI | CTRYAG | 1 cut(s) | 733 |
| BstV1I | GCAGC | 4 cut(s) | 1027, 1326, 1526, 1648 |
| BstV2I | GAAGAC | 1 cut(s) | 1515 |
| BstX2I | RGATCY | 2 cut(s) | 22, 737 |
| BstYI | RGATCY | 2 cut(s) | 22, 737 |
| BsuI | GTATCC | 1 cut(s) | 1143 |
| BsuRI | GGCC | 4 cut(s) | 230, 936, 1342, 1589 |
| BtrI | CACGTC | 1 cut(s) | 340 |
| BtsCI | GGATG | 5 cut(s) | 181, 382, 679, 778, 1114 |
| BtsIMutI | CAGTG | 3 cut(s) | 1167, 1371, 1541 |
| BveI | ACCTGC | 1 cut(s) | 876 |
| Cac8I | GCNNGC | 3 cut(s) | 107, 307, 873 |
| CfoI | GCGC | 2 cut(s) | 125, 1237 |
| Cfr13I | GGNCC | 3 cut(s) | 229, 935, 1341 |
| Cfr9I | CCCGGG | 2 cut(s) | 320, 1193 |
| Csp6I | GTAC | 4 cut(s) | 80, 834, 1112, 1475 |
| CviAII | CATG | 3 cut(s) | 783, 890, 1332 |
| CviQI | GTAC | 4 cut(s) | 80, 834, 1112, 1475 |
| DdeI | CTNAG | 7 cut(s) | 579, 741, 1062, 1101, 1367, 1440, 1468 |
| DpnI | GATC | 7 cut(s) | 24, 318, 543, 739, 1545, 1608, 1622 |
| DpnII | GATC | 7 cut(s) | 22, 316, 541, 737, 1543, 1606, 1620 |
| DraI | TTTAAA | 1 cut(s) | 357 |
| Eam1104I | CTCTTC | 1 cut(s) | 1455 |
| EarI | CTCTTC | 1 cut(s) | 1455 |
| EciI | GGCGGA | 1 cut(s) | 125 |
| Eco130I | CCWWGG | 2 cut(s) | 1309, 1696 |
| Eco57I | CTGAAG | 3 cut(s) | 666, 1011, 1652 |
| Eco88I | CYCGRG | 2 cut(s) | 320, 1193 |
| EcoRII | CCWGG | 1 cut(s) | 1317 |
| EcoT14I | CCWWGG | 2 cut(s) | 1309, 1696 |
| ErhI | CCWWGG | 2 cut(s) | 1309, 1696 |
| FaeI | CATG | 3 cut(s) | 786, 893, 1335 |
| FaqI | GGGAC | 1 cut(s) | 1534 |
| FatI | CATG | 3 cut(s) | 782, 889, 1331 |
| FauI | CCCGC | 1 cut(s) | 114 |
| FauNDI | CATATG | 1 cut(s) | 1297 |
| FbaI | TGATCA | 2 cut(s) | 541, 1606 |
| FblI | GTMKAC | 1 cut(s) | 1720 |
| Fnu4HI | GCNGC | 5 cut(s) | 103, 1041, 1315, 1540, 1637 |
| FokI | GGATG | 5 cut(s) | 188, 389, 686, 785, 1121 |
| Fsp4HI | GCNGC | 5 cut(s) | 103, 1041, 1315, 1540, 1637 |
| FspBI | CTAG | 5 cut(s) | 306, 566, 1025, 1167, 1430 |
| GlaI | GCGC | 2 cut(s) | 124, 1236 |
| GluI | GCNGC | 5 cut(s) | 103, 1041, 1315, 1540, 1637 |
| GsaI | CCCAGC | 1 cut(s) | 1100 |
| HaeIII | GGCC | 4 cut(s) | 230, 936, 1342, 1589 |
| HapII | CCGG | 5 cut(s) | 157, 321, 455, 997, 1194 |
| HhaI | GCGC | 2 cut(s) | 125, 1237 |
| Hin1II | CATG | 3 cut(s) | 786, 893, 1335 |
| Hin6I | GCGC | 2 cut(s) | 123, 1235 |
| HinP1I | GCGC | 2 cut(s) | 123, 1235 |
| HincII | GTYRAC | 1 cut(s) | 345 |
| HindII | GTYRAC | 1 cut(s) | 345 |
| HindIII | AAGCTT | 2 cut(s) | 479, 648 |
| HinfI | GANTC | 4 cut(s) | 464, 1273, 1328, 1418 |
| HpaII | CCGG | 5 cut(s) | 157, 321, 455, 997, 1194 |
| HphI | GGTGA | 4 cut(s) | 88, 146, 263, 1538 |
| Hpy166II | GTNNAC | 5 cut(s) | 345, 709, 1277, 1337, 1721 |
| Hpy188I | TCNGA | 7 cut(s) | 646, 742, 829, 896, 931, 991, 1606 |
| Hpy188III | TCNNGA | 6 cut(s) | 455, 497, 545, 997, 1025, 1103 |
| Hpy8I | GTNNAC | 5 cut(s) | 345, 709, 1277, 1337, 1721 |
| HpyAV | CCTTC | 8 cut(s) | 36, 241, 379, 787, 963, 1318, 1579, 1619 |
| HpyCH4III | ACNGT | 2 cut(s) | 1162, 1566 |
| HpyCH4IV | ACGT | 1 cut(s) | 339 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 605, 1040, 1080, 1097, 1292, 1579 |
| HpyF3I | CTNAG | 7 cut(s) | 579, 741, 1062, 1101, 1367, 1440, 1468 |
| HpySE526I | ACGT | 1 cut(s) | 339 |
| Hsp92II | CATG | 3 cut(s) | 786, 893, 1335 |
| HspAI | GCGC | 2 cut(s) | 123, 1235 |
| Kpn2I | TCCGGA | 2 cut(s) | 454, 996 |
| Ksp22I | TGATCA | 2 cut(s) | 541, 1606 |
| Kzo9I | GATC | 7 cut(s) | 22, 316, 541, 737, 1543, 1606, 1620 |
| LmnI | GCTCC | 1 cut(s) | 1096 |
| Lsp1109I | GCAGC | 4 cut(s) | 1027, 1326, 1526, 1648 |
| LweI | GCATC | 2 cut(s) | 664, 1021 |
| MaeI | CTAG | 5 cut(s) | 306, 566, 1025, 1167, 1430 |
| MaeII | ACGT | 1 cut(s) | 339 |
| MaeIII | GTNAC | 3 cut(s) | 152, 778, 1378 |
| MalI | GATC | 7 cut(s) | 24, 318, 543, 739, 1545, 1608, 1622 |
| MboI | GATC | 7 cut(s) | 22, 316, 541, 737, 1543, 1606, 1620 |
| MboII | GAAGA | 6 cut(s) | 647, 826, 910, 1184, 1472, 1520 |
| MfeI | CAATTG | 2 cut(s) | 437, 1018 |
| MflI | RGATCY | 2 cut(s) | 22, 737 |
| MlyI | GAGTC | 2 cut(s) | 1282, 1322 |
| MmeI | TCCRAC | 1 cut(s) | 864 |
| MnlI | CCTC | 9 cut(s) | 13, 83, 177, 233, 318, 367, 601, 1099, 1432 |
| MroI | TCCGGA | 2 cut(s) | 454, 996 |
| MroXI | GAANNNNTTC | 1 cut(s) | 952 |
| MseI | TTAA | 8 cut(s) | 278, 356, 443, 959, 1122, 1362, 1551, 1613 |
| MspI | CCGG | 5 cut(s) | 157, 321, 455, 997, 1194 |
| MspR9I | CCNGG | 5 cut(s) | 321, 322, 1194, 1195, 1319 |
| MunI | CAATTG | 2 cut(s) | 437, 1018 |
| MvaI | CCWGG | 1 cut(s) | 1319 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 605, 1040, 1080, 1097, 1292, 1579 |
| NciI | CCSGG | 4 cut(s) | 321, 322, 1194, 1195 |
| NdeI | CATATG | 1 cut(s) | 1297 |
| NdeII | GATC | 7 cut(s) | 22, 316, 541, 737, 1543, 1606, 1620 |
| NheI | GCTAGC | 1 cut(s) | 305 |
| NlaIII | CATG | 3 cut(s) | 786, 893, 1335 |
| NlaIV | GGNNCC | 2 cut(s) | 24, 1343 |
| NmuCI | GTSAC | 1 cut(s) | 152 |
| NspI | RCATGY | 2 cut(s) | 786, 893 |
| PciI | ACATGT | 1 cut(s) | 889 |
| PdmI | GAANNNNTTC | 1 cut(s) | 952 |
| PfeI | GAWTC | 2 cut(s) | 464, 1418 |
| PkrI | GCNGC | 5 cut(s) | 104, 1042, 1316, 1541, 1638 |
| PleI | GAGTC | 2 cut(s) | 1281, 1322 |
| PpsI | GAGTC | 2 cut(s) | 1281, 1322 |
| PscI | ACATGT | 1 cut(s) | 889 |
| Psp6I | CCWGG | 1 cut(s) | 1317 |
| PspFI | CCCAGC | 1 cut(s) | 1096 |
| PspGI | CCWGG | 1 cut(s) | 1317 |
| PspN4I | GGNNCC | 2 cut(s) | 24, 1343 |
| PspPI | GGNCC | 3 cut(s) | 229, 935, 1341 |
| PsuI | RGATCY | 2 cut(s) | 22, 737 |
| RsaI | GTAC | 4 cut(s) | 81, 835, 1113, 1476 |
| RsaNI | GTAC | 4 cut(s) | 80, 834, 1112, 1475 |
| SaqAI | TTAA | 8 cut(s) | 278, 356, 443, 959, 1122, 1362, 1551, 1613 |
| SatI | GCNGC | 5 cut(s) | 103, 1041, 1315, 1540, 1637 |
| Sau3AI | GATC | 7 cut(s) | 22, 316, 541, 737, 1543, 1606, 1620 |
| Sau96I | GGNCC | 3 cut(s) | 229, 935, 1341 |
| SchI | GAGTC | 2 cut(s) | 1282, 1322 |
| ScrFI | CCNGG | 5 cut(s) | 321, 322, 1194, 1195, 1319 |
| SfaNI | GCATC | 2 cut(s) | 664, 1021 |
| SfcI | CTRYAG | 1 cut(s) | 733 |
| SmaI | CCCGGG | 2 cut(s) | 322, 1195 |
| SmlI | CTYRAG | 2 cut(s) | 310, 592 |
| SmoI | CTYRAG | 2 cut(s) | 310, 592 |
| SsiI | CCGC | 5 cut(s) | 103, 107, 136, 192, 328 |
| SspI | AATATT | 1 cut(s) | 1250 |
| SspMI | CTAG | 5 cut(s) | 306, 566, 1025, 1167, 1430 |
| StyD4I | CCNGG | 5 cut(s) | 319, 320, 1192, 1193, 1317 |
| StyI | CCWWGG | 2 cut(s) | 1309, 1696 |
| TaaI | ACNGT | 2 cut(s) | 1162, 1566 |
| TaiI | ACGT | 1 cut(s) | 342 |
| TaqI | TCGA | 1 cut(s) | 1623 |
| TauI | GCSGC | 1 cut(s) | 105 |
| TfiI | GAWTC | 2 cut(s) | 464, 1418 |
| Tru1I | TTAA | 8 cut(s) | 278, 356, 443, 959, 1122, 1362, 1551, 1613 |
| Tru9I | TTAA | 8 cut(s) | 278, 356, 443, 959, 1122, 1362, 1551, 1613 |
| TscAI | CASTG | 3 cut(s) | 1167, 1378, 1541 |
| TseFI | GTSAC | 1 cut(s) | 152 |
| TseI | GCWGC | 4 cut(s) | 1040, 1314, 1539, 1636 |
| Tsp45I | GTSAC | 1 cut(s) | 152 |
| TspDTI | ATGAA | 5 cut(s) | 260, 477, 714, 1061, 1314 |
| TspGWI | ACGGA | 1 cut(s) | 476 |
| TspMI | CCCGGG | 2 cut(s) | 320, 1193 |
| TspRI | CASTG | 3 cut(s) | 1167, 1378, 1541 |
| XapI | RAATTY | 4 cut(s) | 143, 448, 701, 1662 |
| XbaI | TCTAGA | 1 cut(s) | 1024 |
| XceI | RCATGY | 2 cut(s) | 786, 893 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 929 |
| XmaI | CCCGGG | 2 cut(s) | 320, 1193 |
| XmiI | GTMKAC | 1 cut(s) | 1720 |
| XmnI | GAANNNNTTC | 1 cut(s) | 952 |
| XspI | CTAG | 5 cut(s) | 306, 566, 1025, 1167, 1430 |