Prupe.6G230000_v2.0.a1

Small RNA degrading nuclease

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
23325541 .. 23329884
4344 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G230000.1

Sequence Viewer

Length: 1551 bp
ATGGATGCTTTTATCGCCACCGCAGAGAAAAAGGTCCTTGTGGAAATTGTGAAGCTGTCCCAAAAGCGGGGAATGAAGGGTAATAAAGGAGACTGGAAGCAGTTCTTAAATATTTATGATAAGAAGTTTGGGGCTAGCTTGAGTGATCCCGGAAAGAGGTCAAACGATGTATTGACTGCGTATTTAAGGACATTTGATAAAGAGGATGACTTGAAGGTTTTGGCTAAAGTTGTCCAATGCCATTCAAATCGCCAAGCAGTTGATCAATTGTTAAAGACTTTTCCAGAAAATGAATCCCCAGAGCAGAGTCTTGTCCGTTCAACTCTCGAACACCCACAATATCCATTGGATTATTCATTCCCTTCACATGAACAGGACTGGGTAGTTTCAAAGCGCGGTAAAAAGTCCAAGGCAACGATTTCAAATGGAATGGTTGCTGTTGATTGTGAGATGGTTCTATGTGAAGATGGCTCTGAAGCTCTAGTTAAAGTGTGTGTTGTTGATGAAAATTTACAGGTCAAGCTAGATGAACTAGTAAACCCTCGTAAAAAAGTTGCTGATTACAGAACTGAGATTACAGGAGTTTCTGCATCAGATTTGGATAGAGTTACATGTACATTGGCTGATATACAGAAACGCTTGAAGAAGTTGTTATCAGGTGAAACTATTTTAGTGGGACACAGTTTGTGTAATGACCTGCAAGCGTTGAAGATAGACCATGCAAGGGTGATTGATACTGCATATATCTTTAAATATTCGGATGGGCCTATTTTTAGAAAACCTTCCTTGAATAATTTGTGCAAGTCTGTATTGGGTTATGAAGTCCGGAAACCAGGTTCTCCACACAATTGTCTAGATGATGCTTGTGCTGCAATGAAACTTGTTCTTGCTAAGATAAAGCGTGAAATTGGCGATATTATCCCCCCAGTTCAGGAGGATGTACGTGAAGTTAATATAGCAAAGCTACTTCTCCACAGGATACCAATCACGGTGCCTAGTGAAGAATTGCACAATGCCATTCCTGGGAACTATACAATAGAAGTCAAGCAACCATCTGTTAAAGCTCAAGGAGATAAATATTCTGCCTTTGCTATCTTTAAGAATCCACAAGAAGCAGATCAAGCATATGAAAAAGTCCAAGGCAACAAGGAAAAGGACTCATCTGGGCGGCCACAGAAGCTTATTTCATTTAAGCTCAGCAAGGGTATATTTACTGATTTATACGTTCGTAAAATGGCACAAGATGATTCCTGTGCCCAAGTATCTTCTAAGAGAGCTTTAGAAGTTGAAGAGAACCCAGGTGTACATAAGAAACAAAAGACAGATCAGAATATAGAAGAGGAGATGGTGGCAGACTTAAGTCAGTGCTGCGACCACCTTAAAGAGATAGAAAGATTGAAGCAAGAACAACAAAAGGTGTCAGAGCAGTGCTGTGATAATTTAAAAGAGATTGAAGGATTGAAGCAGCAACTTAAAAATAAGGAATTTGAAATCTCGACACTGAATAAGATTGTTTCCAAATACCAAGGGGGAAAGAAAAAAGTGAAGTAG

Protein Analysis

517

Amino Acids

58.11

Weight (kDa)

8.44

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 705
AccB1I GGYRCC 1 cut(s) 991
AccII CGCG 1 cut(s) 396
AccIII TCCGGA 1 cut(s) 825
AciI CCGC 4 cut(s) 21, 67, 396, 1168
AclWI GGATC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 1169
AcsI RAATTY 2 cut(s) 508, 1484
AcuI CTGAAG 1 cut(s) 495
AfaI GTAC 3 cut(s) 616, 942, 1305
AfiI CCNNNNNNNGG 6 cut(s) 66, 67, 156, 724, 931, 1023
AflII CTTAAG 1 cut(s) 1357
AflIII ACRYGT 1 cut(s) 611
AhlI ACTAGT 1 cut(s) 532
AjnI CCWGG 3 cut(s) 832, 1021, 1297
AloI GAACNNNNNNTCC 2 cut(s) 820, 852
AluBI AGCT 9 cut(s) 55, 138, 479, 523, 964, 1064, 1180, 1195, 1277
AluI AGCT 9 cut(s) 55, 138, 479, 523, 964, 1064, 1180, 1195, 1277
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 1 cut(s) 140
Aor13HI TCCGGA 1 cut(s) 825
AoxI GGCC 2 cut(s) 764, 1169
ApeKI GCWGC 3 cut(s) 869, 1368, 1465
ApoI RAATTY 2 cut(s) 508, 1484
Asp700I GAANNNNTTC 2 cut(s) 101, 781
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 2 cut(s) 34, 764
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 671, 739
AsuNHI GCTAGC 1 cut(s) 134
AvaII GGWCC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 1258
BanI GGYRCC 1 cut(s) 991
BbvI GCAGC 3 cut(s) 856, 1355, 1477
BccI CCATC 5 cut(s) 445, 461, 755, 1060, 1339
BciT130I CCWGG 3 cut(s) 834, 1023, 1299
BciVI GTATCC 1 cut(s) 972
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 84
BcuI ACTAGT 1 cut(s) 532
BfaI CTAG 6 cut(s) 135, 482, 524, 533, 854, 996
BfrI CTTAAG 1 cut(s) 1357
BfuAI ACCTGC 1 cut(s) 705
BfuI GTATCC 1 cut(s) 972
BisI GCNGC 4 cut(s) 870, 1169, 1369, 1466
BlpI GCTNAGC 1 cut(s) 1196
BlsI GCNGC 4 cut(s) 871, 1170, 1370, 1467
Bme1390I CCNGG 4 cut(s) 150, 834, 1023, 1299
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 34, 764
BmiI GGNNCC 1 cut(s) 993
BmrFI CCNGG 4 cut(s) 150, 834, 1023, 1299
BmrI ACTGGG 2 cut(s) 388, 920
BmsI GCATC 2 cut(s) 599, 850
BmtI GCTAGC 1 cut(s) 138
BmuI ACTGGG 2 cut(s) 388, 920
BoxI GACNNNNGTC 1 cut(s) 1359
Bpu1102I GCTNAGC 1 cut(s) 1196
BpuEI CTTGAG 2 cut(s) 160, 1050
BpuMI CCSGG 1 cut(s) 150
BsaAI YACGTR 1 cut(s) 944
BsaBI GATNNNNATC 1 cut(s) 983
BsaJI CCNNGG 5 cut(s) 408, 1022, 1138, 1297, 1525
BsaWI WCCGGW 1 cut(s) 825
Bsc4I CCNNNNNNNGG 6 cut(s) 66, 67, 156, 724, 931, 1023
Bse1I ACTGG 3 cut(s) 98, 383, 926
Bse3DI GCAATG 1 cut(s) 879
Bse8I GATNNNNATC 1 cut(s) 983
BseAI TCCGGA 1 cut(s) 825
BseBI CCWGG 3 cut(s) 834, 1023, 1299
BseDI CCNNGG 5 cut(s) 408, 1022, 1138, 1297, 1525
BseGI GGATG 4 cut(s) 10, 211, 766, 943
BseJI GATNNNNATC 1 cut(s) 983
BseLI CCNNNNNNNGG 6 cut(s) 66, 67, 156, 724, 931, 1023
BseMI GCAATG 1 cut(s) 879
BseMII CTCAG 2 cut(s) 561, 1210
BseNI ACTGG 3 cut(s) 98, 383, 926
BseRI GAGGAG 1 cut(s) 1355
BseSI GKGCMC 1 cut(s) 1258
BseXI GCAGC 3 cut(s) 856, 1355, 1477
Bsh1236I CGCG 1 cut(s) 396
BshFI GGCC 2 cut(s) 766, 1171
BshNI GGYRCC 1 cut(s) 991
BsiSI CCGG 2 cut(s) 150, 826
BslFI GGGAC 2 cut(s) 43, 690
BslI CCNNNNNNNGG 6 cut(s) 66, 67, 156, 724, 931, 1023
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 2 cut(s) 43, 690
BsnI GGCC 2 cut(s) 766, 1171
Bsp1286I GDGCHC 1 cut(s) 1258
Bsp13I TCCGGA 1 cut(s) 825
Bsp1407I TGTACA 2 cut(s) 614, 1303
Bsp143I GATC 4 cut(s) 145, 262, 1117, 1324
Bsp1720I GCTNAGC 1 cut(s) 1196
BspACI CCGC 4 cut(s) 21, 67, 396, 1168
BspANI GGCC 2 cut(s) 766, 1171
BspCNI CTCAG 2 cut(s) 562, 1209
BspEI TCCGGA 1 cut(s) 825
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 993
BspMI ACCTGC 1 cut(s) 705
BspOI GCTAGC 1 cut(s) 138
BspPI GGATC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 991
BspTI CTTAAG 1 cut(s) 1357
BsrDI GCAATG 1 cut(s) 879
BsrGI TGTACA 2 cut(s) 614, 1303
BsrI ACTGG 3 cut(s) 98, 383, 926
BssECI CCNNGG 5 cut(s) 408, 1022, 1138, 1297, 1525
BssMI GATC 4 cut(s) 145, 262, 1117, 1324
BssT1I CCWWGG 3 cut(s) 408, 1138, 1525
Bst2UI CCWGG 3 cut(s) 834, 1023, 1299
Bst4CI ACNGT 2 cut(s) 683, 991
Bst6I CTCTTC 2 cut(s) 1284, 1332
BstAFI CTTAAG 1 cut(s) 1357
BstAUI TGTACA 2 cut(s) 614, 1303
BstBAI YACGTR 1 cut(s) 944
BstC8I GCNNGC 2 cut(s) 136, 702
BstDEI CTNAG 4 cut(s) 570, 891, 1196, 1269
BstF5I GGATG 4 cut(s) 10, 211, 766, 943
BstFNI CGCG 1 cut(s) 396
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 4 cut(s) 148, 265, 1120, 1327
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 4 cut(s) 145, 262, 1117, 1324
BstMWI GCNNNNNNNGC 4 cut(s) 14, 869, 1121, 1177
BstNI CCWGG 3 cut(s) 834, 1023, 1299
BstNSI RCATGY 1 cut(s) 615
BstPAI GACNNNNGTC 1 cut(s) 1359
BstSCI CCNGG 4 cut(s) 148, 832, 1021, 1297
BstSLI GKGCMC 1 cut(s) 1258
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 3 cut(s) 856, 1355, 1477
BsuI GTATCC 1 cut(s) 972
BsuRI GGCC 2 cut(s) 766, 1171
BtsCI GGATG 4 cut(s) 10, 211, 766, 943
BtsI GCAGTG 1 cut(s) 1433
BtsIMutI CAGTG 3 cut(s) 1370, 1433, 1499
BveI ACCTGC 1 cut(s) 705
Cac8I GCNNGC 2 cut(s) 136, 702
CfoI GCGC 1 cut(s) 396
Cfr13I GGNCC 2 cut(s) 34, 764
CsiI ACCWGGT 1 cut(s) 832
Csp6I GTAC 3 cut(s) 615, 941, 1304
CviAII CATG 3 cut(s) 368, 612, 719
CviQI GTAC 3 cut(s) 615, 941, 1304
DdeI CTNAG 4 cut(s) 570, 891, 1196, 1269
DpnI GATC 4 cut(s) 147, 264, 1119, 1326
DpnII GATC 4 cut(s) 145, 262, 1117, 1324
DraI TTTAAA 2 cut(s) 751, 1443
EaeI YGGCCR 1 cut(s) 1169
Eam1104I CTCTTC 2 cut(s) 1284, 1332
EarI CTCTTC 2 cut(s) 1284, 1332
Eco130I CCWWGG 3 cut(s) 408, 1138, 1525
Eco47I GGWCC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 495
EcoO109I RGGNCCY 1 cut(s) 34
EcoRII CCWGG 3 cut(s) 832, 1021, 1297
EcoT14I CCWWGG 3 cut(s) 408, 1138, 1525
ErhI CCWWGG 3 cut(s) 408, 1138, 1525
FaeI CATG 3 cut(s) 371, 615, 722
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FaqI GGGAC 2 cut(s) 43, 690
FatI CATG 3 cut(s) 367, 611, 718
FauI CCCGC 1 cut(s) 60
FauNDI CATATG 1 cut(s) 1126
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 4 cut(s) 870, 1169, 1369, 1466
FokI GGATG 4 cut(s) 17, 218, 773, 950
Fsp4HI GCNGC 4 cut(s) 870, 1169, 1369, 1466
FspBI CTAG 6 cut(s) 135, 482, 524, 533, 854, 996
GlaI GCGC 1 cut(s) 395
GluI GCNGC 4 cut(s) 870, 1169, 1369, 1466
HaeIII GGCC 2 cut(s) 766, 1171
HapII CCGG 2 cut(s) 150, 826
HhaI GCGC 1 cut(s) 396
Hin1II CATG 3 cut(s) 371, 615, 722
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 1178
HinfI GANTC 5 cut(s) 293, 307, 1102, 1157, 1247
HpaII CCGG 2 cut(s) 150, 826
HphI GGTGA 2 cut(s) 671, 739
Hpy166II GTNNAC 2 cut(s) 538, 1304
Hpy188I TCNGA 5 cut(s) 475, 595, 760, 1329, 1423
Hpy188III TCNNGA 6 cut(s) 284, 326, 826, 854, 932, 1495
Hpy8I GTNNAC 2 cut(s) 538, 1304
HpyAV CCTTC 5 cut(s) 70, 208, 372, 792, 1448
HpyCH4III ACNGT 2 cut(s) 683, 991
HpyCH4IV ACGT 2 cut(s) 943, 1224
HpyCH4V TGCA 7 cut(s) 590, 700, 722, 740, 801, 872, 1009
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 869, 1121, 1177
HpyF3I CTNAG 4 cut(s) 570, 891, 1196, 1269
HpySE526I ACGT 2 cut(s) 943, 1224
Hsp92II CATG 3 cut(s) 371, 615, 722
HspAI GCGC 1 cut(s) 394
Kpn2I TCCGGA 1 cut(s) 825
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 4 cut(s) 145, 262, 1117, 1324
Lsp1109I GCAGC 3 cut(s) 856, 1355, 1477
LweI GCATC 2 cut(s) 599, 850
MabI ACCWGGT 1 cut(s) 832
MaeI CTAG 6 cut(s) 135, 482, 524, 533, 854, 996
MaeII ACGT 2 cut(s) 943, 1224
MaeIII GTNAC 1 cut(s) 607
MalI GATC 4 cut(s) 147, 264, 1119, 1326
MboI GATC 4 cut(s) 145, 262, 1117, 1324
MboII GAAGA 7 cut(s) 476, 655, 721, 1013, 1257, 1301, 1349
MfeI CAATTG 2 cut(s) 266, 847
MhlI GDGCHC 1 cut(s) 1258
MluCI AATT 9 cut(s) 45, 266, 508, 793, 847, 906, 1004, 1438, 1484
MlyI GAGTC 2 cut(s) 316, 1151
MnlI CCTC 5 cut(s) 150, 196, 552, 928, 1333
MroI TCCGGA 1 cut(s) 825
MroXI GAANNNNTTC 2 cut(s) 101, 781
MspCI CTTAAG 1 cut(s) 1357
MspI CCGG 2 cut(s) 150, 826
MspR9I CCNGG 4 cut(s) 150, 834, 1023, 1299
MunI CAATTG 2 cut(s) 266, 847
MvaI CCWGG 3 cut(s) 834, 1023, 1299
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 4 cut(s) 14, 869, 1121, 1177
NciI CCSGG 1 cut(s) 150
NdeI CATATG 1 cut(s) 1126
NdeII GATC 4 cut(s) 145, 262, 1117, 1324
NheI GCTAGC 1 cut(s) 134
NlaIII CATG 3 cut(s) 371, 615, 722
NlaIV GGNNCC 1 cut(s) 993
NspI RCATGY 1 cut(s) 615
PciI ACATGT 1 cut(s) 611
PdmI GAANNNNTTC 2 cut(s) 101, 781
PfeI GAWTC 3 cut(s) 293, 1102, 1247
PfoI TCCNGGA 1 cut(s) 148
PkrI GCNGC 4 cut(s) 871, 1170, 1370, 1467
PleI GAGTC 2 cut(s) 315, 1151
PpsI GAGTC 2 cut(s) 315, 1151
Ppu21I YACGTR 1 cut(s) 944
PpuMI RGGWCCY 1 cut(s) 34
PscI ACATGT 1 cut(s) 611
PshAI GACNNNNGTC 1 cut(s) 1359
Psp5II RGGWCCY 1 cut(s) 34
Psp6I CCWGG 3 cut(s) 832, 1021, 1297
PspGI CCWGG 3 cut(s) 832, 1021, 1297
PspN4I GGNNCC 1 cut(s) 993
PspPI GGNCC 2 cut(s) 34, 764
PspPPI RGGWCCY 1 cut(s) 34
PsrI GAACNNNNNNTAC 2 cut(s) 559, 591
RsaI GTAC 3 cut(s) 616, 942, 1305
RsaNI GTAC 3 cut(s) 615, 941, 1304
SatI GCNGC 4 cut(s) 870, 1169, 1369, 1466
Sau3AI GATC 4 cut(s) 145, 262, 1117, 1324
Sau96I GGNCC 2 cut(s) 34, 764
SchI GAGTC 2 cut(s) 316, 1151
ScrFI CCNGG 4 cut(s) 150, 834, 1023, 1299
SduI GDGCHC 1 cut(s) 1258
SexAI ACCWGGT 1 cut(s) 832
SfaNI GCATC 2 cut(s) 599, 850
SinI GGWCC 1 cut(s) 34
SmlI CTYRAG 3 cut(s) 139, 1065, 1357
SmoI CTYRAG 3 cut(s) 139, 1065, 1357
SpeI ACTAGT 1 cut(s) 532
Sse9I AATT 9 cut(s) 45, 266, 508, 793, 847, 906, 1004, 1438, 1484
SsiI CCGC 4 cut(s) 21, 67, 396, 1168
SspI AATATT 3 cut(s) 112, 755, 1079
SspMI CTAG 6 cut(s) 135, 482, 524, 533, 854, 996
StyD4I CCNGG 4 cut(s) 148, 832, 1021, 1297
StyI CCWWGG 3 cut(s) 408, 1138, 1525
TaaI ACNGT 2 cut(s) 683, 991
TaiI ACGT 2 cut(s) 946, 1227
TaqI TCGA 2 cut(s) 327, 1496
TasI AATT 9 cut(s) 45, 266, 508, 793, 847, 906, 1004, 1438, 1484
TatI WGTACW 2 cut(s) 614, 1303
TauI GCSGC 1 cut(s) 1171
TfiI GAWTC 3 cut(s) 293, 1102, 1247
TscAI CASTG 3 cut(s) 1370, 1433, 1506
TseI GCWGC 3 cut(s) 869, 1368, 1465
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 3 cut(s) 1370, 1433, 1506
Vha464I CTTAAG 1 cut(s) 1357
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 2 cut(s) 508, 1484
XbaI TCTAGA 1 cut(s) 853
XceI RCATGY 1 cut(s) 615
XmnI GAANNNNTTC 2 cut(s) 101, 781
XspI CTAG 6 cut(s) 135, 482, 524, 533, 854, 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.