Small RNA degrading nuclease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G50090 AT3G50100 AT3G50100 AT5G67240 AT5G67240 AT5G67240 AT5G67240 |
| fragaria_vesca | FvH4_1g16590 FvH4_1g16590 FvH4_4g28290 |
| malus_domestica | MD02G1178000.v1.1 MD15G1287900.v1.1 |
| prunus_persica | Prupe.6G230000_v2.0.a1 |
| pyrus_communis | pycom02g14410 pycom15g25140 |
| rosa_chinensis | RchiOBHm_Chr2g0106501 |
| rosa_laevigata | RLG00000017507 |
| rosa_roxburghii | Rroxscaffold_2G00137120 Rroxscaffold_3G00227560 |
| rosa_rugosa | Rorug02G0135700 Rorug02G0135800 Rorug02G0135900 Rorug02G0136000 Rorug05G0123100 Rorug05G0252900 Rorug05G0347700 |
| rosa_samantha | Rh2AG187300 Rh2BG198100 Rh2BG614000 Rh2CG192300 Rh2DG193400 Rh5BG226200 |
| rosa_wichuraiana | Rw2G014600 Rw2G014620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 705 |
| AccB1I | GGYRCC | 1 cut(s) | 991 |
| AccII | CGCG | 1 cut(s) | 396 |
| AccIII | TCCGGA | 1 cut(s) | 825 |
| AciI | CCGC | 4 cut(s) | 21, 67, 396, 1168 |
| AclWI | GGATC | 1 cut(s) | 140 |
| AcoI | YGGCCR | 1 cut(s) | 1169 |
| AcsI | RAATTY | 2 cut(s) | 508, 1484 |
| AcuI | CTGAAG | 1 cut(s) | 495 |
| AfaI | GTAC | 3 cut(s) | 616, 942, 1305 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 66, 67, 156, 724, 931, 1023 |
| AflII | CTTAAG | 1 cut(s) | 1357 |
| AflIII | ACRYGT | 1 cut(s) | 611 |
| AhlI | ACTAGT | 1 cut(s) | 532 |
| AjnI | CCWGG | 3 cut(s) | 832, 1021, 1297 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 820, 852 |
| AluBI | AGCT | 9 cut(s) | 55, 138, 479, 523, 964, 1064, 1180, 1195, 1277 |
| AluI | AGCT | 9 cut(s) | 55, 138, 479, 523, 964, 1064, 1180, 1195, 1277 |
| Alw26I | GTCTC | 1 cut(s) | 84 |
| AlwI | GGATC | 1 cut(s) | 140 |
| Aor13HI | TCCGGA | 1 cut(s) | 825 |
| AoxI | GGCC | 2 cut(s) | 764, 1169 |
| ApeKI | GCWGC | 3 cut(s) | 869, 1368, 1465 |
| ApoI | RAATTY | 2 cut(s) | 508, 1484 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 101, 781 |
| AspLEI | GCGC | 1 cut(s) | 396 |
| AspS9I | GGNCC | 2 cut(s) | 34, 764 |
| AsuC2I | CCSGG | 1 cut(s) | 150 |
| AsuHPI | GGTGA | 2 cut(s) | 671, 739 |
| AsuNHI | GCTAGC | 1 cut(s) | 134 |
| AvaII | GGWCC | 1 cut(s) | 34 |
| BaeGI | GKGCMC | 1 cut(s) | 1258 |
| BanI | GGYRCC | 1 cut(s) | 991 |
| BbvI | GCAGC | 3 cut(s) | 856, 1355, 1477 |
| BccI | CCATC | 5 cut(s) | 445, 461, 755, 1060, 1339 |
| BciT130I | CCWGG | 3 cut(s) | 834, 1023, 1299 |
| BciVI | GTATCC | 1 cut(s) | 972 |
| BclI | TGATCA | 1 cut(s) | 262 |
| BcnI | CCSGG | 1 cut(s) | 150 |
| BcoDI | GTCTC | 1 cut(s) | 84 |
| BcuI | ACTAGT | 1 cut(s) | 532 |
| BfaI | CTAG | 6 cut(s) | 135, 482, 524, 533, 854, 996 |
| BfrI | CTTAAG | 1 cut(s) | 1357 |
| BfuAI | ACCTGC | 1 cut(s) | 705 |
| BfuI | GTATCC | 1 cut(s) | 972 |
| BisI | GCNGC | 4 cut(s) | 870, 1169, 1369, 1466 |
| BlpI | GCTNAGC | 1 cut(s) | 1196 |
| BlsI | GCNGC | 4 cut(s) | 871, 1170, 1370, 1467 |
| Bme1390I | CCNGG | 4 cut(s) | 150, 834, 1023, 1299 |
| Bme18I | GGWCC | 1 cut(s) | 34 |
| BmgT120I | GGNCC | 2 cut(s) | 34, 764 |
| BmiI | GGNNCC | 1 cut(s) | 993 |
| BmrFI | CCNGG | 4 cut(s) | 150, 834, 1023, 1299 |
| BmrI | ACTGGG | 2 cut(s) | 388, 920 |
| BmsI | GCATC | 2 cut(s) | 599, 850 |
| BmtI | GCTAGC | 1 cut(s) | 138 |
| BmuI | ACTGGG | 2 cut(s) | 388, 920 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1359 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1196 |
| BpuEI | CTTGAG | 2 cut(s) | 160, 1050 |
| BpuMI | CCSGG | 1 cut(s) | 150 |
| BsaAI | YACGTR | 1 cut(s) | 944 |
| BsaBI | GATNNNNATC | 1 cut(s) | 983 |
| BsaJI | CCNNGG | 5 cut(s) | 408, 1022, 1138, 1297, 1525 |
| BsaWI | WCCGGW | 1 cut(s) | 825 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 66, 67, 156, 724, 931, 1023 |
| Bse1I | ACTGG | 3 cut(s) | 98, 383, 926 |
| Bse3DI | GCAATG | 1 cut(s) | 879 |
| Bse8I | GATNNNNATC | 1 cut(s) | 983 |
| BseAI | TCCGGA | 1 cut(s) | 825 |
| BseBI | CCWGG | 3 cut(s) | 834, 1023, 1299 |
| BseDI | CCNNGG | 5 cut(s) | 408, 1022, 1138, 1297, 1525 |
| BseGI | GGATG | 4 cut(s) | 10, 211, 766, 943 |
| BseJI | GATNNNNATC | 1 cut(s) | 983 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 66, 67, 156, 724, 931, 1023 |
| BseMI | GCAATG | 1 cut(s) | 879 |
| BseMII | CTCAG | 2 cut(s) | 561, 1210 |
| BseNI | ACTGG | 3 cut(s) | 98, 383, 926 |
| BseRI | GAGGAG | 1 cut(s) | 1355 |
| BseSI | GKGCMC | 1 cut(s) | 1258 |
| BseXI | GCAGC | 3 cut(s) | 856, 1355, 1477 |
| Bsh1236I | CGCG | 1 cut(s) | 396 |
| BshFI | GGCC | 2 cut(s) | 766, 1171 |
| BshNI | GGYRCC | 1 cut(s) | 991 |
| BsiSI | CCGG | 2 cut(s) | 150, 826 |
| BslFI | GGGAC | 2 cut(s) | 43, 690 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 66, 67, 156, 724, 931, 1023 |
| BsmAI | GTCTC | 1 cut(s) | 84 |
| BsmFI | GGGAC | 2 cut(s) | 43, 690 |
| BsnI | GGCC | 2 cut(s) | 766, 1171 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1258 |
| Bsp13I | TCCGGA | 1 cut(s) | 825 |
| Bsp1407I | TGTACA | 2 cut(s) | 614, 1303 |
| Bsp143I | GATC | 4 cut(s) | 145, 262, 1117, 1324 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1196 |
| BspACI | CCGC | 4 cut(s) | 21, 67, 396, 1168 |
| BspANI | GGCC | 2 cut(s) | 766, 1171 |
| BspCNI | CTCAG | 2 cut(s) | 562, 1209 |
| BspEI | TCCGGA | 1 cut(s) | 825 |
| BspFNI | CGCG | 1 cut(s) | 396 |
| BspLI | GGNNCC | 1 cut(s) | 993 |
| BspMI | ACCTGC | 1 cut(s) | 705 |
| BspOI | GCTAGC | 1 cut(s) | 138 |
| BspPI | GGATC | 1 cut(s) | 140 |
| BspT107I | GGYRCC | 1 cut(s) | 991 |
| BspTI | CTTAAG | 1 cut(s) | 1357 |
| BsrDI | GCAATG | 1 cut(s) | 879 |
| BsrGI | TGTACA | 2 cut(s) | 614, 1303 |
| BsrI | ACTGG | 3 cut(s) | 98, 383, 926 |
| BssECI | CCNNGG | 5 cut(s) | 408, 1022, 1138, 1297, 1525 |
| BssMI | GATC | 4 cut(s) | 145, 262, 1117, 1324 |
| BssT1I | CCWWGG | 3 cut(s) | 408, 1138, 1525 |
| Bst2UI | CCWGG | 3 cut(s) | 834, 1023, 1299 |
| Bst4CI | ACNGT | 2 cut(s) | 683, 991 |
| Bst6I | CTCTTC | 2 cut(s) | 1284, 1332 |
| BstAFI | CTTAAG | 1 cut(s) | 1357 |
| BstAUI | TGTACA | 2 cut(s) | 614, 1303 |
| BstBAI | YACGTR | 1 cut(s) | 944 |
| BstC8I | GCNNGC | 2 cut(s) | 136, 702 |
| BstDEI | CTNAG | 4 cut(s) | 570, 891, 1196, 1269 |
| BstF5I | GGATG | 4 cut(s) | 10, 211, 766, 943 |
| BstFNI | CGCG | 1 cut(s) | 396 |
| BstHHI | GCGC | 1 cut(s) | 396 |
| BstKTI | GATC | 4 cut(s) | 148, 265, 1120, 1327 |
| BstMAI | GTCTC | 1 cut(s) | 84 |
| BstMBI | GATC | 4 cut(s) | 145, 262, 1117, 1324 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 14, 869, 1121, 1177 |
| BstNI | CCWGG | 3 cut(s) | 834, 1023, 1299 |
| BstNSI | RCATGY | 1 cut(s) | 615 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1359 |
| BstSCI | CCNGG | 4 cut(s) | 148, 832, 1021, 1297 |
| BstSLI | GKGCMC | 1 cut(s) | 1258 |
| BstUI | CGCG | 1 cut(s) | 396 |
| BstV1I | GCAGC | 3 cut(s) | 856, 1355, 1477 |
| BsuI | GTATCC | 1 cut(s) | 972 |
| BsuRI | GGCC | 2 cut(s) | 766, 1171 |
| BtsCI | GGATG | 4 cut(s) | 10, 211, 766, 943 |
| BtsI | GCAGTG | 1 cut(s) | 1433 |
| BtsIMutI | CAGTG | 3 cut(s) | 1370, 1433, 1499 |
| BveI | ACCTGC | 1 cut(s) | 705 |
| Cac8I | GCNNGC | 2 cut(s) | 136, 702 |
| CfoI | GCGC | 1 cut(s) | 396 |
| Cfr13I | GGNCC | 2 cut(s) | 34, 764 |
| CsiI | ACCWGGT | 1 cut(s) | 832 |
| Csp6I | GTAC | 3 cut(s) | 615, 941, 1304 |
| CviAII | CATG | 3 cut(s) | 368, 612, 719 |
| CviQI | GTAC | 3 cut(s) | 615, 941, 1304 |
| DdeI | CTNAG | 4 cut(s) | 570, 891, 1196, 1269 |
| DpnI | GATC | 4 cut(s) | 147, 264, 1119, 1326 |
| DpnII | GATC | 4 cut(s) | 145, 262, 1117, 1324 |
| DraI | TTTAAA | 2 cut(s) | 751, 1443 |
| EaeI | YGGCCR | 1 cut(s) | 1169 |
| Eam1104I | CTCTTC | 2 cut(s) | 1284, 1332 |
| EarI | CTCTTC | 2 cut(s) | 1284, 1332 |
| Eco130I | CCWWGG | 3 cut(s) | 408, 1138, 1525 |
| Eco47I | GGWCC | 1 cut(s) | 34 |
| Eco57I | CTGAAG | 1 cut(s) | 495 |
| EcoO109I | RGGNCCY | 1 cut(s) | 34 |
| EcoRII | CCWGG | 3 cut(s) | 832, 1021, 1297 |
| EcoT14I | CCWWGG | 3 cut(s) | 408, 1138, 1525 |
| ErhI | CCWWGG | 3 cut(s) | 408, 1138, 1525 |
| FaeI | CATG | 3 cut(s) | 371, 615, 722 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 89, 121 |
| FaqI | GGGAC | 2 cut(s) | 43, 690 |
| FatI | CATG | 3 cut(s) | 367, 611, 718 |
| FauI | CCCGC | 1 cut(s) | 60 |
| FauNDI | CATATG | 1 cut(s) | 1126 |
| FbaI | TGATCA | 1 cut(s) | 262 |
| Fnu4HI | GCNGC | 4 cut(s) | 870, 1169, 1369, 1466 |
| FokI | GGATG | 4 cut(s) | 17, 218, 773, 950 |
| Fsp4HI | GCNGC | 4 cut(s) | 870, 1169, 1369, 1466 |
| FspBI | CTAG | 6 cut(s) | 135, 482, 524, 533, 854, 996 |
| GlaI | GCGC | 1 cut(s) | 395 |
| GluI | GCNGC | 4 cut(s) | 870, 1169, 1369, 1466 |
| HaeIII | GGCC | 2 cut(s) | 766, 1171 |
| HapII | CCGG | 2 cut(s) | 150, 826 |
| HhaI | GCGC | 1 cut(s) | 396 |
| Hin1II | CATG | 3 cut(s) | 371, 615, 722 |
| Hin6I | GCGC | 1 cut(s) | 394 |
| HinP1I | GCGC | 1 cut(s) | 394 |
| HindIII | AAGCTT | 1 cut(s) | 1178 |
| HinfI | GANTC | 5 cut(s) | 293, 307, 1102, 1157, 1247 |
| HpaII | CCGG | 2 cut(s) | 150, 826 |
| HphI | GGTGA | 2 cut(s) | 671, 739 |
| Hpy166II | GTNNAC | 2 cut(s) | 538, 1304 |
| Hpy188I | TCNGA | 5 cut(s) | 475, 595, 760, 1329, 1423 |
| Hpy188III | TCNNGA | 6 cut(s) | 284, 326, 826, 854, 932, 1495 |
| Hpy8I | GTNNAC | 2 cut(s) | 538, 1304 |
| HpyAV | CCTTC | 5 cut(s) | 70, 208, 372, 792, 1448 |
| HpyCH4III | ACNGT | 2 cut(s) | 683, 991 |
| HpyCH4IV | ACGT | 2 cut(s) | 943, 1224 |
| HpyCH4V | TGCA | 7 cut(s) | 590, 700, 722, 740, 801, 872, 1009 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 14, 869, 1121, 1177 |
| HpyF3I | CTNAG | 4 cut(s) | 570, 891, 1196, 1269 |
| HpySE526I | ACGT | 2 cut(s) | 943, 1224 |
| Hsp92II | CATG | 3 cut(s) | 371, 615, 722 |
| HspAI | GCGC | 1 cut(s) | 394 |
| Kpn2I | TCCGGA | 1 cut(s) | 825 |
| Ksp22I | TGATCA | 1 cut(s) | 262 |
| Kzo9I | GATC | 4 cut(s) | 145, 262, 1117, 1324 |
| Lsp1109I | GCAGC | 3 cut(s) | 856, 1355, 1477 |
| LweI | GCATC | 2 cut(s) | 599, 850 |
| MabI | ACCWGGT | 1 cut(s) | 832 |
| MaeI | CTAG | 6 cut(s) | 135, 482, 524, 533, 854, 996 |
| MaeII | ACGT | 2 cut(s) | 943, 1224 |
| MaeIII | GTNAC | 1 cut(s) | 607 |
| MalI | GATC | 4 cut(s) | 147, 264, 1119, 1326 |
| MboI | GATC | 4 cut(s) | 145, 262, 1117, 1324 |
| MboII | GAAGA | 7 cut(s) | 476, 655, 721, 1013, 1257, 1301, 1349 |
| MfeI | CAATTG | 2 cut(s) | 266, 847 |
| MhlI | GDGCHC | 1 cut(s) | 1258 |
| MluCI | AATT | 9 cut(s) | 45, 266, 508, 793, 847, 906, 1004, 1438, 1484 |
| MlyI | GAGTC | 2 cut(s) | 316, 1151 |
| MnlI | CCTC | 5 cut(s) | 150, 196, 552, 928, 1333 |
| MroI | TCCGGA | 1 cut(s) | 825 |
| MroXI | GAANNNNTTC | 2 cut(s) | 101, 781 |
| MspCI | CTTAAG | 1 cut(s) | 1357 |
| MspI | CCGG | 2 cut(s) | 150, 826 |
| MspR9I | CCNGG | 4 cut(s) | 150, 834, 1023, 1299 |
| MunI | CAATTG | 2 cut(s) | 266, 847 |
| MvaI | CCWGG | 3 cut(s) | 834, 1023, 1299 |
| MvnI | CGCG | 1 cut(s) | 396 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 14, 869, 1121, 1177 |
| NciI | CCSGG | 1 cut(s) | 150 |
| NdeI | CATATG | 1 cut(s) | 1126 |
| NdeII | GATC | 4 cut(s) | 145, 262, 1117, 1324 |
| NheI | GCTAGC | 1 cut(s) | 134 |
| NlaIII | CATG | 3 cut(s) | 371, 615, 722 |
| NlaIV | GGNNCC | 1 cut(s) | 993 |
| NspI | RCATGY | 1 cut(s) | 615 |
| PciI | ACATGT | 1 cut(s) | 611 |
| PdmI | GAANNNNTTC | 2 cut(s) | 101, 781 |
| PfeI | GAWTC | 3 cut(s) | 293, 1102, 1247 |
| PfoI | TCCNGGA | 1 cut(s) | 148 |
| PkrI | GCNGC | 4 cut(s) | 871, 1170, 1370, 1467 |
| PleI | GAGTC | 2 cut(s) | 315, 1151 |
| PpsI | GAGTC | 2 cut(s) | 315, 1151 |
| Ppu21I | YACGTR | 1 cut(s) | 944 |
| PpuMI | RGGWCCY | 1 cut(s) | 34 |
| PscI | ACATGT | 1 cut(s) | 611 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1359 |
| Psp5II | RGGWCCY | 1 cut(s) | 34 |
| Psp6I | CCWGG | 3 cut(s) | 832, 1021, 1297 |
| PspGI | CCWGG | 3 cut(s) | 832, 1021, 1297 |
| PspN4I | GGNNCC | 1 cut(s) | 993 |
| PspPI | GGNCC | 2 cut(s) | 34, 764 |
| PspPPI | RGGWCCY | 1 cut(s) | 34 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 559, 591 |
| RsaI | GTAC | 3 cut(s) | 616, 942, 1305 |
| RsaNI | GTAC | 3 cut(s) | 615, 941, 1304 |
| SatI | GCNGC | 4 cut(s) | 870, 1169, 1369, 1466 |
| Sau3AI | GATC | 4 cut(s) | 145, 262, 1117, 1324 |
| Sau96I | GGNCC | 2 cut(s) | 34, 764 |
| SchI | GAGTC | 2 cut(s) | 316, 1151 |
| ScrFI | CCNGG | 4 cut(s) | 150, 834, 1023, 1299 |
| SduI | GDGCHC | 1 cut(s) | 1258 |
| SexAI | ACCWGGT | 1 cut(s) | 832 |
| SfaNI | GCATC | 2 cut(s) | 599, 850 |
| SinI | GGWCC | 1 cut(s) | 34 |
| SmlI | CTYRAG | 3 cut(s) | 139, 1065, 1357 |
| SmoI | CTYRAG | 3 cut(s) | 139, 1065, 1357 |
| SpeI | ACTAGT | 1 cut(s) | 532 |
| Sse9I | AATT | 9 cut(s) | 45, 266, 508, 793, 847, 906, 1004, 1438, 1484 |
| SsiI | CCGC | 4 cut(s) | 21, 67, 396, 1168 |
| SspI | AATATT | 3 cut(s) | 112, 755, 1079 |
| SspMI | CTAG | 6 cut(s) | 135, 482, 524, 533, 854, 996 |
| StyD4I | CCNGG | 4 cut(s) | 148, 832, 1021, 1297 |
| StyI | CCWWGG | 3 cut(s) | 408, 1138, 1525 |
| TaaI | ACNGT | 2 cut(s) | 683, 991 |
| TaiI | ACGT | 2 cut(s) | 946, 1227 |
| TaqI | TCGA | 2 cut(s) | 327, 1496 |
| TasI | AATT | 9 cut(s) | 45, 266, 508, 793, 847, 906, 1004, 1438, 1484 |
| TatI | WGTACW | 2 cut(s) | 614, 1303 |
| TauI | GCSGC | 1 cut(s) | 1171 |
| TfiI | GAWTC | 3 cut(s) | 293, 1102, 1247 |
| TscAI | CASTG | 3 cut(s) | 1370, 1433, 1506 |
| TseI | GCWGC | 3 cut(s) | 869, 1368, 1465 |
| TspGWI | ACGGA | 1 cut(s) | 305 |
| TspRI | CASTG | 3 cut(s) | 1370, 1433, 1506 |
| Vha464I | CTTAAG | 1 cut(s) | 1357 |
| VpaK11BI | GGWCC | 1 cut(s) | 34 |
| XapI | RAATTY | 2 cut(s) | 508, 1484 |
| XbaI | TCTAGA | 1 cut(s) | 853 |
| XceI | RCATGY | 1 cut(s) | 615 |
| XmnI | GAANNNNTTC | 2 cut(s) | 101, 781 |
| XspI | CTAG | 6 cut(s) | 135, 482, 524, 533, 854, 996 |