Small RNA degrading nuclease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G50090 AT3G50100 AT3G50100 AT5G67240 AT5G67240 AT5G67240 AT5G67240 |
| fragaria_vesca | FvH4_1g16590 FvH4_1g16590 FvH4_4g28290 |
| malus_domestica | MD02G1178000.v1.1 MD15G1287900.v1.1 |
| prunus_persica | Prupe.6G230000_v2.0.a1 |
| pyrus_communis | pycom02g14410 pycom15g25140 |
| rosa_chinensis | RchiOBHm_Chr2g0106501 |
| rosa_laevigata | RLG00000017507 |
| rosa_roxburghii | Rroxscaffold_2G00137120 Rroxscaffold_3G00227560 |
| rosa_rugosa | Rorug02G0135700 Rorug02G0135800 Rorug02G0135900 Rorug02G0136000 Rorug05G0123100 Rorug05G0252900 Rorug05G0347700 |
| rosa_samantha | Rh2AG187300 Rh2BG198100 Rh2BG614000 Rh2CG192300 Rh2DG193400 Rh5BG226200 |
| rosa_wichuraiana | Rw2G014600 Rw2G014620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 705 |
| AccB1I | GGYRCC | 1 cut(s) | 1142 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 724 |
| AciI | CCGC | 4 cut(s) | 21, 285, 335, 738 |
| AclWI | GGATC | 1 cut(s) | 510 |
| AcsI | RAATTY | 3 cut(s) | 125, 1187, 1491 |
| AcuI | CTGAAG | 2 cut(s) | 495, 1523 |
| AfaI | GTAC | 2 cut(s) | 616, 942 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 379, 724, 1023, 1153 |
| AhlI | ACTAGT | 1 cut(s) | 532 |
| AjnI | CCWGG | 4 cut(s) | 148, 297, 372, 1021 |
| AleI | CACNNNNGTG | 1 cut(s) | 1368 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 820, 852 |
| Alw21I | GWGCWC | 3 cut(s) | 333, 1279, 1433 |
| Alw26I | GTCTC | 2 cut(s) | 1267, 1337 |
| AlwI | GGATC | 1 cut(s) | 510 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 106 |
| AoxI | GGCC | 1 cut(s) | 764 |
| ApeKI | GCWGC | 5 cut(s) | 214, 587, 869, 1117, 1540 |
| ApoI | RAATTY | 3 cut(s) | 125, 1187, 1491 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1309, 1341 |
| AseI | ATTAAT | 1 cut(s) | 951 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 101, 638, 781 |
| AspLEI | GCGC | 1 cut(s) | 1117 |
| AspS9I | GGNCC | 2 cut(s) | 132, 764 |
| AsuHPI | GGTGA | 4 cut(s) | 101, 739, 923, 1024 |
| AsuII | TTCGAA | 1 cut(s) | 245 |
| AsuNHI | GCTAGC | 1 cut(s) | 1120 |
| AvaII | GGWCC | 1 cut(s) | 132 |
| BaeGI | GKGCMC | 1 cut(s) | 681 |
| BanI | GGYRCC | 1 cut(s) | 1142 |
| BanII | GRGCYC | 1 cut(s) | 1279 |
| Bbv12I | GWGCWC | 3 cut(s) | 333, 1279, 1433 |
| BbvI | GCAGC | 5 cut(s) | 226, 574, 856, 1129, 1527 |
| BccI | CCATC | 5 cut(s) | 445, 461, 653, 931, 1060 |
| BciT130I | CCWGG | 4 cut(s) | 150, 299, 374, 1023 |
| BciVI | GTATCC | 2 cut(s) | 351, 972 |
| BclI | TGATCA | 1 cut(s) | 1372 |
| BcoDI | GTCTC | 2 cut(s) | 1267, 1337 |
| BcuI | ACTAGT | 1 cut(s) | 532 |
| BfaI | CTAG | 4 cut(s) | 111, 533, 854, 1121 |
| BfmI | CTRYAG | 1 cut(s) | 698 |
| BfuAI | ACCTGC | 1 cut(s) | 705 |
| BfuI | GTATCC | 2 cut(s) | 351, 972 |
| BisI | GCNGC | 5 cut(s) | 215, 588, 870, 1118, 1541 |
| BlsI | GCNGC | 5 cut(s) | 216, 589, 871, 1119, 1542 |
| Bme1390I | CCNGG | 4 cut(s) | 150, 299, 374, 1023 |
| Bme18I | GGWCC | 1 cut(s) | 132 |
| BmgT120I | GGNCC | 2 cut(s) | 132, 764 |
| BmiI | GGNNCC | 3 cut(s) | 133, 1144, 1249 |
| BmrFI | CCNGG | 4 cut(s) | 150, 299, 374, 1023 |
| BmrI | ACTGGG | 1 cut(s) | 388 |
| BmsI | GCATC | 3 cut(s) | 420, 599, 850 |
| BmtI | GCTAGC | 1 cut(s) | 1124 |
| BmuI | ACTGGG | 1 cut(s) | 388 |
| BpmI | CTGGAG | 1 cut(s) | 624 |
| Bpu10I | CCTNAGC | 1 cut(s) | 891 |
| Bpu14I | TTCGAA | 1 cut(s) | 245 |
| BpuEI | CTTGAG | 3 cut(s) | 160, 347, 380 |
| BsaJI | CCNNGG | 3 cut(s) | 148, 297, 1022 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 379, 724, 1023, 1153 |
| Bse1I | ACTGG | 4 cut(s) | 98, 383, 528, 1168 |
| Bse3DI | GCAATG | 1 cut(s) | 879 |
| BseBI | CCWGG | 4 cut(s) | 150, 299, 374, 1023 |
| BseDI | CCNNGG | 3 cut(s) | 148, 297, 1022 |
| BseGI | GGATG | 3 cut(s) | 211, 532, 943 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 379, 724, 1023, 1153 |
| BseMI | GCAATG | 1 cut(s) | 879 |
| BseMII | CTCAG | 3 cut(s) | 278, 561, 1446 |
| BseNI | ACTGG | 4 cut(s) | 98, 383, 528, 1168 |
| BseRI | GAGGAG | 1 cut(s) | 1304 |
| BseSI | GKGCMC | 1 cut(s) | 681 |
| BseXI | GCAGC | 5 cut(s) | 226, 574, 856, 1129, 1527 |
| BshFI | GGCC | 1 cut(s) | 766 |
| BshNI | GGYRCC | 1 cut(s) | 1142 |
| BsiHKAI | GWGCWC | 3 cut(s) | 333, 1279, 1433 |
| BslFI | GGGAC | 2 cut(s) | 280, 676 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 379, 724, 1023, 1153 |
| BsmAI | GTCTC | 2 cut(s) | 1267, 1337 |
| BsmFI | GGGAC | 2 cut(s) | 280, 676 |
| BsmI | GAATGC | 1 cut(s) | 242 |
| BsnI | GGCC | 1 cut(s) | 766 |
| Bsp119I | TTCGAA | 1 cut(s) | 245 |
| Bsp1286I | GDGCHC | 4 cut(s) | 333, 681, 1279, 1433 |
| Bsp143I | GATC | 3 cut(s) | 502, 1372, 1435 |
| BspACI | CCGC | 4 cut(s) | 21, 285, 335, 738 |
| BspANI | GGCC | 1 cut(s) | 766 |
| BspCNI | CTCAG | 3 cut(s) | 277, 562, 1445 |
| BspLI | GGNNCC | 3 cut(s) | 133, 1144, 1249 |
| BspMAI | CTGCAG | 1 cut(s) | 702 |
| BspMI | ACCTGC | 1 cut(s) | 705 |
| BspOI | GCTAGC | 1 cut(s) | 1124 |
| BspPI | GGATC | 1 cut(s) | 510 |
| BspQI | GCTCTTC | 1 cut(s) | 1502 |
| BspT104I | TTCGAA | 1 cut(s) | 245 |
| BspT107I | GGYRCC | 1 cut(s) | 1142 |
| BsrDI | GCAATG | 1 cut(s) | 879 |
| BsrI | ACTGG | 4 cut(s) | 98, 383, 528, 1168 |
| BssECI | CCNNGG | 3 cut(s) | 148, 297, 1022 |
| BssMI | GATC | 3 cut(s) | 502, 1372, 1435 |
| Bst2UI | CCWGG | 4 cut(s) | 150, 299, 374, 1023 |
| Bst4CI | ACNGT | 4 cut(s) | 683, 991, 1367, 1428 |
| Bst6I | CTCTTC | 3 cut(s) | 1146, 1270, 1502 |
| BstBI | TTCGAA | 1 cut(s) | 245 |
| BstC8I | GCNNGC | 3 cut(s) | 435, 702, 1122 |
| BstDEI | CTNAG | 9 cut(s) | 264, 511, 570, 891, 1036, 1252, 1269, 1357, 1432 |
| BstF5I | GGATG | 3 cut(s) | 211, 532, 943 |
| BstHHI | GCGC | 1 cut(s) | 1117 |
| BstKTI | GATC | 3 cut(s) | 505, 1375, 1438 |
| BstMAI | GTCTC | 2 cut(s) | 1267, 1337 |
| BstMBI | GATC | 3 cut(s) | 502, 1372, 1435 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 869, 1121 |
| BstNI | CCWGG | 4 cut(s) | 150, 299, 374, 1023 |
| BstSCI | CCNGG | 4 cut(s) | 148, 297, 372, 1021 |
| BstSFI | CTRYAG | 1 cut(s) | 698 |
| BstSLI | GKGCMC | 1 cut(s) | 681 |
| BstV1I | GCAGC | 5 cut(s) | 226, 574, 856, 1129, 1527 |
| BsuI | GTATCC | 2 cut(s) | 351, 972 |
| BsuRI | GGCC | 1 cut(s) | 766 |
| BtsCI | GGATG | 3 cut(s) | 211, 532, 943 |
| BtsIMutI | CAGTG | 3 cut(s) | 996, 1363, 1433 |
| BveI | ACCTGC | 1 cut(s) | 705 |
| Cac8I | GCNNGC | 3 cut(s) | 435, 702, 1122 |
| CaiI | CAGNNNCTG | 1 cut(s) | 106 |
| CfoI | GCGC | 1 cut(s) | 1117 |
| Cfr13I | GGNCC | 2 cut(s) | 132, 764 |
| Csp6I | GTAC | 2 cut(s) | 615, 941 |
| CviQI | GTAC | 2 cut(s) | 615, 941 |
| DdeI | CTNAG | 9 cut(s) | 264, 511, 570, 891, 1036, 1252, 1269, 1357, 1432 |
| DpnI | GATC | 3 cut(s) | 504, 1374, 1437 |
| DpnII | GATC | 3 cut(s) | 502, 1372, 1435 |
| Eam1104I | CTCTTC | 3 cut(s) | 1146, 1270, 1502 |
| EarI | CTCTTC | 3 cut(s) | 1146, 1270, 1502 |
| Ecl136II | GAGCTC | 1 cut(s) | 1277 |
| Eco24I | GRGCYC | 1 cut(s) | 1279 |
| Eco32I | GATATC | 1 cut(s) | 420 |
| Eco47I | GGWCC | 1 cut(s) | 132 |
| Eco53kI | GAGCTC | 1 cut(s) | 1277 |
| Eco57I | CTGAAG | 2 cut(s) | 495, 1523 |
| EcoICRI | GAGCTC | 1 cut(s) | 1277 |
| EcoRII | CCWGG | 4 cut(s) | 148, 297, 372, 1021 |
| EcoRV | GATATC | 1 cut(s) | 420 |
| EcoT38I | GRGCYC | 1 cut(s) | 1279 |
| FaqI | GGGAC | 2 cut(s) | 280, 676 |
| FauI | CCCGC | 2 cut(s) | 292, 342 |
| FauNDI | CATATG | 2 cut(s) | 742, 1126 |
| FbaI | TGATCA | 1 cut(s) | 1372 |
| Fnu4HI | GCNGC | 5 cut(s) | 215, 588, 870, 1118, 1541 |
| FokI | GGATG | 3 cut(s) | 218, 539, 950 |
| FriOI | GRGCYC | 1 cut(s) | 1279 |
| Fsp4HI | GCNGC | 5 cut(s) | 215, 588, 870, 1118, 1541 |
| FspBI | CTAG | 4 cut(s) | 111, 533, 854, 1121 |
| GlaI | GCGC | 1 cut(s) | 1116 |
| GluI | GCNGC | 5 cut(s) | 215, 588, 870, 1118, 1541 |
| GsuI | CTGGAG | 1 cut(s) | 624 |
| HaeIII | GGCC | 1 cut(s) | 766 |
| HhaI | GCGC | 1 cut(s) | 1117 |
| Hin6I | GCGC | 1 cut(s) | 1115 |
| HinP1I | GCGC | 1 cut(s) | 1115 |
| HincII | GTYRAC | 2 cut(s) | 162, 174 |
| HindII | GTYRAC | 2 cut(s) | 162, 174 |
| HindIII | AAGCTT | 2 cut(s) | 308, 477 |
| HinfI | GANTC | 3 cut(s) | 247, 293, 1157 |
| HphI | GGTGA | 4 cut(s) | 101, 739, 923, 1024 |
| Hpy166II | GTNNAC | 3 cut(s) | 162, 174, 538 |
| Hpy188I | TCNGA | 6 cut(s) | 507, 595, 658, 760, 1329, 1435 |
| Hpy8I | GTNNAC | 3 cut(s) | 162, 174, 538 |
| HpyAV | CCTTC | 7 cut(s) | 46, 70, 792, 980, 1005, 1393, 1448 |
| HpyCH4III | ACNGT | 4 cut(s) | 683, 991, 1367, 1428 |
| HpyCH4V | TGCA | 9 cut(s) | 214, 240, 590, 700, 801, 872, 1009, 1304, 1543 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 869, 1121 |
| HpyF3I | CTNAG | 9 cut(s) | 264, 511, 570, 891, 1036, 1252, 1269, 1357, 1432 |
| HspAI | GCGC | 1 cut(s) | 1115 |
| Ksp22I | TGATCA | 1 cut(s) | 1372 |
| Kzo9I | GATC | 3 cut(s) | 502, 1372, 1435 |
| LguI | GCTCTTC | 1 cut(s) | 1502 |
| LmnI | GCTCC | 2 cut(s) | 301, 898 |
| Lsp1109I | GCAGC | 5 cut(s) | 226, 574, 856, 1129, 1527 |
| LweI | GCATC | 3 cut(s) | 420, 599, 850 |
| MaeI | CTAG | 4 cut(s) | 111, 533, 854, 1121 |
| MaeIII | GTNAC | 7 cut(s) | 89, 143, 319, 363, 385, 607, 689 |
| MalI | GATC | 3 cut(s) | 504, 1374, 1437 |
| MboI | GATC | 3 cut(s) | 502, 1372, 1435 |
| MfeI | CAATTG | 1 cut(s) | 345 |
| MhlI | GDGCHC | 4 cut(s) | 333, 681, 1279, 1433 |
| MlyI | GAGTC | 2 cut(s) | 302, 1151 |
| MnlI | CCTC | 7 cut(s) | 23, 62, 480, 508, 928, 1147, 1282 |
| MroXI | GAANNNNTTC | 3 cut(s) | 101, 638, 781 |
| MseI | TTAA | 8 cut(s) | 519, 671, 951, 1059, 1098, 1191, 1442, 1473 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1368 |
| MspR9I | CCNGG | 4 cut(s) | 150, 299, 374, 1023 |
| MunI | CAATTG | 1 cut(s) | 345 |
| Mva1269I | GAATGC | 1 cut(s) | 242 |
| MvaI | CCWGG | 4 cut(s) | 150, 299, 374, 1023 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 869, 1121 |
| NdeI | CATATG | 2 cut(s) | 742, 1126 |
| NdeII | GATC | 3 cut(s) | 502, 1372, 1435 |
| NheI | GCTAGC | 1 cut(s) | 1120 |
| NlaIV | GGNNCC | 3 cut(s) | 133, 1144, 1249 |
| NmuCI | GTSAC | 4 cut(s) | 89, 143, 319, 363 |
| NspV | TTCGAA | 1 cut(s) | 245 |
| OliI | CACNNNNGTG | 1 cut(s) | 1368 |
| PciSI | GCTCTTC | 1 cut(s) | 1502 |
| PctI | GAATGC | 1 cut(s) | 242 |
| PdmI | GAANNNNTTC | 3 cut(s) | 101, 638, 781 |
| PfeI | GAWTC | 1 cut(s) | 247 |
| PflFI | GACNNNGTC | 1 cut(s) | 1259 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 724 |
| PkrI | GCNGC | 5 cut(s) | 216, 589, 871, 1119, 1542 |
| PleI | GAGTC | 2 cut(s) | 301, 1151 |
| PpsI | GAGTC | 2 cut(s) | 301, 1151 |
| PshBI | ATTAAT | 1 cut(s) | 951 |
| Psp124BI | GAGCTC | 1 cut(s) | 1279 |
| Psp6I | CCWGG | 4 cut(s) | 148, 297, 372, 1021 |
| PspGI | CCWGG | 4 cut(s) | 148, 297, 372, 1021 |
| PspN4I | GGNNCC | 3 cut(s) | 133, 1144, 1249 |
| PspPI | GGNCC | 2 cut(s) | 132, 764 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 559, 591 |
| PstI | CTGCAG | 1 cut(s) | 702 |
| PstNI | CAGNNNCTG | 1 cut(s) | 106 |
| PsyI | GACNNNGTC | 1 cut(s) | 1259 |
| RsaI | GTAC | 2 cut(s) | 616, 942 |
| RsaNI | GTAC | 2 cut(s) | 615, 941 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1368 |
| SacI | GAGCTC | 1 cut(s) | 1279 |
| SapI | GCTCTTC | 1 cut(s) | 1502 |
| SaqAI | TTAA | 8 cut(s) | 519, 671, 951, 1059, 1098, 1191, 1442, 1473 |
| SatI | GCNGC | 5 cut(s) | 215, 588, 870, 1118, 1541 |
| Sau3AI | GATC | 3 cut(s) | 502, 1372, 1435 |
| Sau96I | GGNCC | 2 cut(s) | 132, 764 |
| SbfI | CCTGCAGG | 1 cut(s) | 702 |
| SchI | GAGTC | 2 cut(s) | 302, 1151 |
| ScrFI | CCNGG | 4 cut(s) | 150, 299, 374, 1023 |
| SdaI | CCTGCAGG | 1 cut(s) | 702 |
| SduI | GDGCHC | 4 cut(s) | 333, 681, 1279, 1433 |
| SfaNI | GCATC | 3 cut(s) | 420, 599, 850 |
| SfcI | CTRYAG | 1 cut(s) | 698 |
| SfuI | TTCGAA | 1 cut(s) | 245 |
| SinI | GGWCC | 1 cut(s) | 132 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1368 |
| SmlI | CTYRAG | 3 cut(s) | 139, 326, 395 |
| SmoI | CTYRAG | 3 cut(s) | 139, 326, 395 |
| SpeI | ACTAGT | 1 cut(s) | 532 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 702 |
| SsiI | CCGC | 4 cut(s) | 21, 285, 335, 738 |
| SspMI | CTAG | 4 cut(s) | 111, 533, 854, 1121 |
| SstI | GAGCTC | 1 cut(s) | 1279 |
| StyD4I | CCNGG | 4 cut(s) | 148, 297, 372, 1021 |
| TaaI | ACNGT | 4 cut(s) | 683, 991, 1367, 1428 |
| TaqI | TCGA | 3 cut(s) | 245, 250, 1281 |
| TatI | WGTACW | 1 cut(s) | 614 |
| TfiI | GAWTC | 1 cut(s) | 247 |
| Tru1I | TTAA | 8 cut(s) | 519, 671, 951, 1059, 1098, 1191, 1442, 1473 |
| Tru9I | TTAA | 8 cut(s) | 519, 671, 951, 1059, 1098, 1191, 1442, 1473 |
| TscAI | CASTG | 3 cut(s) | 996, 1370, 1433 |
| TseFI | GTSAC | 4 cut(s) | 89, 143, 319, 363 |
| TseI | GCWGC | 5 cut(s) | 214, 587, 869, 1117, 1540 |
| Tsp45I | GTSAC | 4 cut(s) | 89, 143, 319, 363 |
| TspDTI | ATGAA | 7 cut(s) | 89, 543, 834, 890, 1119, 1143, 1503 |
| TspGWI | ACGGA | 1 cut(s) | 305 |
| TspRI | CASTG | 3 cut(s) | 996, 1370, 1433 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1259 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 724 |
| VpaK11BI | GGWCC | 1 cut(s) | 132 |
| VspI | ATTAAT | 1 cut(s) | 951 |
| XapI | RAATTY | 3 cut(s) | 125, 1187, 1491 |
| XbaI | TCTAGA | 1 cut(s) | 853 |
| XmnI | GAANNNNTTC | 3 cut(s) | 101, 638, 781 |
| XspI | CTAG | 4 cut(s) | 111, 533, 854, 1121 |