FvH4_1g16590

Small RNA degrading nuclease

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
9557486 .. 9561001
3516 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16590.t1

Sequence Viewer

Length: 1575 bp
ATGGAAGATTTCCTCGCCACCGCAGAGAAAAAGGTGCTTGTGGAGATAGTGAAGGTTGCCCAGAAGCGAGGAATGAAGGGTTCTAAAGGTGACTGGAAGCAGTTCCTGACTAGCTATGATAAAAAATTCGGGTCCAGCTTGAGTGACCCTGGTAAAAGGTCAACCGATGTGTTGACTTCTTTTGTTAGGAGTTTTGATAATCAGGATGACTTGCAGCTATTTGCCAGAGTTGTAGAATGCAATTCGAATCGACAAGGTGTGGCTCAGTTCTTGAACAACTCTCCCGCAAATGAGTCCCAGGAGCAGAAGCTTGTCCGTGTCACTCTTGAGCACCCGCAGTATCCAATTGACTATGCGTTCCCGTCACATAACCAGGACTGGGTAGTTACGAAGCTCAAGAAGAAGTCAAAGGAGATGATATCAAATGTGATGCTTGCTGTTGATTGCGAGATGGTTCTATGTGAAGATGGAACTGAAGCTTTAGTGAGGGTGTGTGTTGTGGATCGGAACTTAGAGGTTAAACTGGATGAACTAGTGAACCCTGACAAAGAAGTTGCCGATTACAGAACTGAGATTACAGGAGTGGCTGCATCAGAGTTGGCTGGAGTTACTTGTACTTTAGCTGATATACAGAAATCGTTCAAGAAGTTGCTGTCAGATGGGACTATCTTAATTGGGCACAGTTTGTGTAACGACCTGCAGGCATTGAAGATAGACCATAAAATGGTGATTGATACCGCATATGTATTTAGATACTCGGACGGGCCTATTTATAGAAAGCCTTCGTTGAATAATTTGTGCAAGGCTGTGTTGGGCTATGAAGTTAGGAAGAAAGGTTCTCCACATAATTGTCTAGATGATGCCTGTGCTGCAATGAAACTTGTTCTTGCTAAGGTGGAGCGTGAAGTTGGTGATACCATTCCATCAGTTCAGGAGGATGTACCTGAAATTAATACTGCCAAGCTACTCCTTCACAGGATACCAAGAACAGTGCCTTCAAATGAGTTGCATAAAGCCATACCTGGGAACTTCACCTTAGAAGTCAAGAAGCCATCAATTAAAGCCAAAGGAGATATATATTCTGCTTTTGCTACATTTAAGAATGAACAAGAAGCGCAGCTAGCATATGAAAAACTCAAAGGCACCCAAGAAGAGGACTCAACTGGAAAGCCACAAAAACTTATTGAATTTAAGGTCAGCACAGGGGTAATTACTGATTTCTATGTTCGTAAAATGGCACATAATGGTTCCTTAGACCAAGTCTCTTCTAAGAGAGCTCTCGAAGTTGAGGAGAACACAGGTGCAAATAAGAAACAAAAGACAGGTCAGACAATAGAAGATGAGACTATGCCAGACTTAGACCACTGTTGTGATCATCTCAAAGAGATAGAAAGATTGAAGGAAGAACAAGAAAAGCTATTGAAACAGTGCTCAGATCAGTTAAAAGATATTGAAGGATTGAAGCAAGAAATTAAAAATAGGGAATATGAAATTTCTATGCTGAAGAAGAGCCAAGTTCCAGAAGAACAAGAAAAAAGGCTGCATAAGAAAAAGGACAAGAAGAAACGGAAATAA

Protein Analysis

525

Amino Acids

59.26

Weight (kDa)

7.5

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 705
AccB1I GGYRCC 1 cut(s) 1142
AccB7I CCANNNNNTGG 1 cut(s) 724
AciI CCGC 4 cut(s) 21, 285, 335, 738
AclWI GGATC 1 cut(s) 510
AcsI RAATTY 3 cut(s) 125, 1187, 1491
AcuI CTGAAG 2 cut(s) 495, 1523
AfaI GTAC 2 cut(s) 616, 942
AfiI CCNNNNNNNGG 4 cut(s) 379, 724, 1023, 1153
AhlI ACTAGT 1 cut(s) 532
AjnI CCWGG 4 cut(s) 148, 297, 372, 1021
AleI CACNNNNGTG 1 cut(s) 1368
AloI GAACNNNNNNTCC 2 cut(s) 820, 852
Alw21I GWGCWC 3 cut(s) 333, 1279, 1433
Alw26I GTCTC 2 cut(s) 1267, 1337
AlwI GGATC 1 cut(s) 510
AlwNI CAGNNNCTG 1 cut(s) 106
AoxI GGCC 1 cut(s) 764
ApeKI GCWGC 5 cut(s) 214, 587, 869, 1117, 1540
ApoI RAATTY 3 cut(s) 125, 1187, 1491
ArsI GACNNNNNNTTYG 2 cut(s) 1309, 1341
AseI ATTAAT 1 cut(s) 951
Asp700I GAANNNNTTC 3 cut(s) 101, 638, 781
AspLEI GCGC 1 cut(s) 1117
AspS9I GGNCC 2 cut(s) 132, 764
AsuHPI GGTGA 4 cut(s) 101, 739, 923, 1024
AsuII TTCGAA 1 cut(s) 245
AsuNHI GCTAGC 1 cut(s) 1120
AvaII GGWCC 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 681
BanI GGYRCC 1 cut(s) 1142
BanII GRGCYC 1 cut(s) 1279
Bbv12I GWGCWC 3 cut(s) 333, 1279, 1433
BbvI GCAGC 5 cut(s) 226, 574, 856, 1129, 1527
BccI CCATC 5 cut(s) 445, 461, 653, 931, 1060
BciT130I CCWGG 4 cut(s) 150, 299, 374, 1023
BciVI GTATCC 2 cut(s) 351, 972
BclI TGATCA 1 cut(s) 1372
BcoDI GTCTC 2 cut(s) 1267, 1337
BcuI ACTAGT 1 cut(s) 532
BfaI CTAG 4 cut(s) 111, 533, 854, 1121
BfmI CTRYAG 1 cut(s) 698
BfuAI ACCTGC 1 cut(s) 705
BfuI GTATCC 2 cut(s) 351, 972
BisI GCNGC 5 cut(s) 215, 588, 870, 1118, 1541
BlsI GCNGC 5 cut(s) 216, 589, 871, 1119, 1542
Bme1390I CCNGG 4 cut(s) 150, 299, 374, 1023
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 2 cut(s) 132, 764
BmiI GGNNCC 3 cut(s) 133, 1144, 1249
BmrFI CCNGG 4 cut(s) 150, 299, 374, 1023
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 3 cut(s) 420, 599, 850
BmtI GCTAGC 1 cut(s) 1124
BmuI ACTGGG 1 cut(s) 388
BpmI CTGGAG 1 cut(s) 624
Bpu10I CCTNAGC 1 cut(s) 891
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 3 cut(s) 160, 347, 380
BsaJI CCNNGG 3 cut(s) 148, 297, 1022
Bsc4I CCNNNNNNNGG 4 cut(s) 379, 724, 1023, 1153
Bse1I ACTGG 4 cut(s) 98, 383, 528, 1168
Bse3DI GCAATG 1 cut(s) 879
BseBI CCWGG 4 cut(s) 150, 299, 374, 1023
BseDI CCNNGG 3 cut(s) 148, 297, 1022
BseGI GGATG 3 cut(s) 211, 532, 943
BseLI CCNNNNNNNGG 4 cut(s) 379, 724, 1023, 1153
BseMI GCAATG 1 cut(s) 879
BseMII CTCAG 3 cut(s) 278, 561, 1446
BseNI ACTGG 4 cut(s) 98, 383, 528, 1168
BseRI GAGGAG 1 cut(s) 1304
BseSI GKGCMC 1 cut(s) 681
BseXI GCAGC 5 cut(s) 226, 574, 856, 1129, 1527
BshFI GGCC 1 cut(s) 766
BshNI GGYRCC 1 cut(s) 1142
BsiHKAI GWGCWC 3 cut(s) 333, 1279, 1433
BslFI GGGAC 2 cut(s) 280, 676
BslI CCNNNNNNNGG 4 cut(s) 379, 724, 1023, 1153
BsmAI GTCTC 2 cut(s) 1267, 1337
BsmFI GGGAC 2 cut(s) 280, 676
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 1 cut(s) 766
Bsp119I TTCGAA 1 cut(s) 245
Bsp1286I GDGCHC 4 cut(s) 333, 681, 1279, 1433
Bsp143I GATC 3 cut(s) 502, 1372, 1435
BspACI CCGC 4 cut(s) 21, 285, 335, 738
BspANI GGCC 1 cut(s) 766
BspCNI CTCAG 3 cut(s) 277, 562, 1445
BspLI GGNNCC 3 cut(s) 133, 1144, 1249
BspMAI CTGCAG 1 cut(s) 702
BspMI ACCTGC 1 cut(s) 705
BspOI GCTAGC 1 cut(s) 1124
BspPI GGATC 1 cut(s) 510
BspQI GCTCTTC 1 cut(s) 1502
BspT104I TTCGAA 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 1142
BsrDI GCAATG 1 cut(s) 879
BsrI ACTGG 4 cut(s) 98, 383, 528, 1168
BssECI CCNNGG 3 cut(s) 148, 297, 1022
BssMI GATC 3 cut(s) 502, 1372, 1435
Bst2UI CCWGG 4 cut(s) 150, 299, 374, 1023
Bst4CI ACNGT 4 cut(s) 683, 991, 1367, 1428
Bst6I CTCTTC 3 cut(s) 1146, 1270, 1502
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 3 cut(s) 435, 702, 1122
BstDEI CTNAG 9 cut(s) 264, 511, 570, 891, 1036, 1252, 1269, 1357, 1432
BstF5I GGATG 3 cut(s) 211, 532, 943
BstHHI GCGC 1 cut(s) 1117
BstKTI GATC 3 cut(s) 505, 1375, 1438
BstMAI GTCTC 2 cut(s) 1267, 1337
BstMBI GATC 3 cut(s) 502, 1372, 1435
BstMWI GCNNNNNNNGC 2 cut(s) 869, 1121
BstNI CCWGG 4 cut(s) 150, 299, 374, 1023
BstSCI CCNGG 4 cut(s) 148, 297, 372, 1021
BstSFI CTRYAG 1 cut(s) 698
BstSLI GKGCMC 1 cut(s) 681
BstV1I GCAGC 5 cut(s) 226, 574, 856, 1129, 1527
BsuI GTATCC 2 cut(s) 351, 972
BsuRI GGCC 1 cut(s) 766
BtsCI GGATG 3 cut(s) 211, 532, 943
BtsIMutI CAGTG 3 cut(s) 996, 1363, 1433
BveI ACCTGC 1 cut(s) 705
Cac8I GCNNGC 3 cut(s) 435, 702, 1122
CaiI CAGNNNCTG 1 cut(s) 106
CfoI GCGC 1 cut(s) 1117
Cfr13I GGNCC 2 cut(s) 132, 764
Csp6I GTAC 2 cut(s) 615, 941
CviQI GTAC 2 cut(s) 615, 941
DdeI CTNAG 9 cut(s) 264, 511, 570, 891, 1036, 1252, 1269, 1357, 1432
DpnI GATC 3 cut(s) 504, 1374, 1437
DpnII GATC 3 cut(s) 502, 1372, 1435
Eam1104I CTCTTC 3 cut(s) 1146, 1270, 1502
EarI CTCTTC 3 cut(s) 1146, 1270, 1502
Ecl136II GAGCTC 1 cut(s) 1277
Eco24I GRGCYC 1 cut(s) 1279
Eco32I GATATC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 1277
Eco57I CTGAAG 2 cut(s) 495, 1523
EcoICRI GAGCTC 1 cut(s) 1277
EcoRII CCWGG 4 cut(s) 148, 297, 372, 1021
EcoRV GATATC 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 1279
FaqI GGGAC 2 cut(s) 280, 676
FauI CCCGC 2 cut(s) 292, 342
FauNDI CATATG 2 cut(s) 742, 1126
FbaI TGATCA 1 cut(s) 1372
Fnu4HI GCNGC 5 cut(s) 215, 588, 870, 1118, 1541
FokI GGATG 3 cut(s) 218, 539, 950
FriOI GRGCYC 1 cut(s) 1279
Fsp4HI GCNGC 5 cut(s) 215, 588, 870, 1118, 1541
FspBI CTAG 4 cut(s) 111, 533, 854, 1121
GlaI GCGC 1 cut(s) 1116
GluI GCNGC 5 cut(s) 215, 588, 870, 1118, 1541
GsuI CTGGAG 1 cut(s) 624
HaeIII GGCC 1 cut(s) 766
HhaI GCGC 1 cut(s) 1117
Hin6I GCGC 1 cut(s) 1115
HinP1I GCGC 1 cut(s) 1115
HincII GTYRAC 2 cut(s) 162, 174
HindII GTYRAC 2 cut(s) 162, 174
HindIII AAGCTT 2 cut(s) 308, 477
HinfI GANTC 3 cut(s) 247, 293, 1157
HphI GGTGA 4 cut(s) 101, 739, 923, 1024
Hpy166II GTNNAC 3 cut(s) 162, 174, 538
Hpy188I TCNGA 6 cut(s) 507, 595, 658, 760, 1329, 1435
Hpy8I GTNNAC 3 cut(s) 162, 174, 538
HpyAV CCTTC 7 cut(s) 46, 70, 792, 980, 1005, 1393, 1448
HpyCH4III ACNGT 4 cut(s) 683, 991, 1367, 1428
HpyCH4V TGCA 9 cut(s) 214, 240, 590, 700, 801, 872, 1009, 1304, 1543
HpyF10VI GCNNNNNNNGC 2 cut(s) 869, 1121
HpyF3I CTNAG 9 cut(s) 264, 511, 570, 891, 1036, 1252, 1269, 1357, 1432
HspAI GCGC 1 cut(s) 1115
Ksp22I TGATCA 1 cut(s) 1372
Kzo9I GATC 3 cut(s) 502, 1372, 1435
LguI GCTCTTC 1 cut(s) 1502
LmnI GCTCC 2 cut(s) 301, 898
Lsp1109I GCAGC 5 cut(s) 226, 574, 856, 1129, 1527
LweI GCATC 3 cut(s) 420, 599, 850
MaeI CTAG 4 cut(s) 111, 533, 854, 1121
MaeIII GTNAC 7 cut(s) 89, 143, 319, 363, 385, 607, 689
MalI GATC 3 cut(s) 504, 1374, 1437
MboI GATC 3 cut(s) 502, 1372, 1435
MfeI CAATTG 1 cut(s) 345
MhlI GDGCHC 4 cut(s) 333, 681, 1279, 1433
MlyI GAGTC 2 cut(s) 302, 1151
MnlI CCTC 7 cut(s) 23, 62, 480, 508, 928, 1147, 1282
MroXI GAANNNNTTC 3 cut(s) 101, 638, 781
MseI TTAA 8 cut(s) 519, 671, 951, 1059, 1098, 1191, 1442, 1473
MslI CAYNNNNRTG 1 cut(s) 1368
MspR9I CCNGG 4 cut(s) 150, 299, 374, 1023
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 4 cut(s) 150, 299, 374, 1023
MwoI GCNNNNNNNGC 2 cut(s) 869, 1121
NdeI CATATG 2 cut(s) 742, 1126
NdeII GATC 3 cut(s) 502, 1372, 1435
NheI GCTAGC 1 cut(s) 1120
NlaIV GGNNCC 3 cut(s) 133, 1144, 1249
NmuCI GTSAC 4 cut(s) 89, 143, 319, 363
NspV TTCGAA 1 cut(s) 245
OliI CACNNNNGTG 1 cut(s) 1368
PciSI GCTCTTC 1 cut(s) 1502
PctI GAATGC 1 cut(s) 242
PdmI GAANNNNTTC 3 cut(s) 101, 638, 781
PfeI GAWTC 1 cut(s) 247
PflFI GACNNNGTC 1 cut(s) 1259
PflMI CCANNNNNTGG 1 cut(s) 724
PkrI GCNGC 5 cut(s) 216, 589, 871, 1119, 1542
PleI GAGTC 2 cut(s) 301, 1151
PpsI GAGTC 2 cut(s) 301, 1151
PshBI ATTAAT 1 cut(s) 951
Psp124BI GAGCTC 1 cut(s) 1279
Psp6I CCWGG 4 cut(s) 148, 297, 372, 1021
PspGI CCWGG 4 cut(s) 148, 297, 372, 1021
PspN4I GGNNCC 3 cut(s) 133, 1144, 1249
PspPI GGNCC 2 cut(s) 132, 764
PsrI GAACNNNNNNTAC 2 cut(s) 559, 591
PstI CTGCAG 1 cut(s) 702
PstNI CAGNNNCTG 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 1259
RsaI GTAC 2 cut(s) 616, 942
RsaNI GTAC 2 cut(s) 615, 941
RseI CAYNNNNRTG 1 cut(s) 1368
SacI GAGCTC 1 cut(s) 1279
SapI GCTCTTC 1 cut(s) 1502
SaqAI TTAA 8 cut(s) 519, 671, 951, 1059, 1098, 1191, 1442, 1473
SatI GCNGC 5 cut(s) 215, 588, 870, 1118, 1541
Sau3AI GATC 3 cut(s) 502, 1372, 1435
Sau96I GGNCC 2 cut(s) 132, 764
SbfI CCTGCAGG 1 cut(s) 702
SchI GAGTC 2 cut(s) 302, 1151
ScrFI CCNGG 4 cut(s) 150, 299, 374, 1023
SdaI CCTGCAGG 1 cut(s) 702
SduI GDGCHC 4 cut(s) 333, 681, 1279, 1433
SfaNI GCATC 3 cut(s) 420, 599, 850
SfcI CTRYAG 1 cut(s) 698
SfuI TTCGAA 1 cut(s) 245
SinI GGWCC 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 1368
SmlI CTYRAG 3 cut(s) 139, 326, 395
SmoI CTYRAG 3 cut(s) 139, 326, 395
SpeI ACTAGT 1 cut(s) 532
Sse8387I CCTGCAGG 1 cut(s) 702
SsiI CCGC 4 cut(s) 21, 285, 335, 738
SspMI CTAG 4 cut(s) 111, 533, 854, 1121
SstI GAGCTC 1 cut(s) 1279
StyD4I CCNGG 4 cut(s) 148, 297, 372, 1021
TaaI ACNGT 4 cut(s) 683, 991, 1367, 1428
TaqI TCGA 3 cut(s) 245, 250, 1281
TatI WGTACW 1 cut(s) 614
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 8 cut(s) 519, 671, 951, 1059, 1098, 1191, 1442, 1473
Tru9I TTAA 8 cut(s) 519, 671, 951, 1059, 1098, 1191, 1442, 1473
TscAI CASTG 3 cut(s) 996, 1370, 1433
TseFI GTSAC 4 cut(s) 89, 143, 319, 363
TseI GCWGC 5 cut(s) 214, 587, 869, 1117, 1540
Tsp45I GTSAC 4 cut(s) 89, 143, 319, 363
TspDTI ATGAA 7 cut(s) 89, 543, 834, 890, 1119, 1143, 1503
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 3 cut(s) 996, 1370, 1433
Tth111I GACNNNGTC 1 cut(s) 1259
Van91I CCANNNNNTGG 1 cut(s) 724
VpaK11BI GGWCC 1 cut(s) 132
VspI ATTAAT 1 cut(s) 951
XapI RAATTY 3 cut(s) 125, 1187, 1491
XbaI TCTAGA 1 cut(s) 853
XmnI GAANNNNTTC 3 cut(s) 101, 638, 781
XspI CTAG 4 cut(s) 111, 533, 854, 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.