Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003797

Physical Location & Seq

Genomic Coordinates Reverse (-)

16458598 .. 16460762

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G014620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGATGATTTCATCGCCACCGCAGAGAAAAAGGTGCTTGTGGAGATTGTGAAGTTGGCCCAGAAGCGAGGAATGAAGGGTTCTAAAGGAGACTGGAAGCAGTTTCTAGCTAGTTATGATAAAAAATTTGGGGCCAGCTTGAGTGATCCTGGAAAGAGGTCAATCGATGTGTTGACTGCTTTTGTGAGGAGTTTTGATAAACAGGATGATTTGAAGCTTTTCGCCAAAGTTGTACAAAGCAATTCGAATCGCCAAGGAGTAGACCAGTTCTTGAAGAACTCTCCAGCAAATGAATCCATCGAGCAGAAGCTGGTCCGTGTAACTCTTGAGCACCCACAATACCCAATTGACTATTCTTTCCCGTCACATAACCAGGACTGGGTAGTTACAAAGCTCAATAAAAAGTCGAAGGAGACGTCAAATGCAATGCTTCCTGTTGATTGTGAGATGGTTCTATGTAAAGATGGATCCGAAGCTTTAGTAAGGGTAACTAGGTACCGGATACTAATATGGCCAAGCTACTCCTTCACAGGATACCAAGAACAGTGCCTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010586 GO:0010587 GO:0016070 GO:0016592 GO:0016787 GO:0016788 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T RRM_1

Protein Analysis

185

Amino Acids

21.11

Weight (kDa)

9.02

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50090 AT3G50100 AT3G50100 AT5G67240 AT5G67240 AT5G67240 AT5G67240
fragaria_vesca	FvH4_1g16590 FvH4_1g16590 FvH4_4g28290
malus_domestica	MD02G1178000.v1.1 MD15G1287900.v1.1
prunus_persica	Prupe.6G230000_v2.0.a1
pyrus_communis	pycom02g14410 pycom15g25140
rosa_chinensis	RchiOBHm_Chr2g0106501
rosa_laevigata	RLG00000017507
rosa_roxburghii	Rroxscaffold_2G00137120 Rroxscaffold_3G00227560
rosa_rugosa	Rorug02G0135700 Rorug02G0135800 Rorug02G0135900 Rorug02G0136000 Rorug05G0123100 Rorug05G0252900 Rorug05G0347700
rosa_samantha	Rh2AG187300 Rh2BG198100 Rh2BG614000 Rh2CG192300 Rh2DG193400 Rh5BG226200
rosa_wichuraiana	Rw2G014600 Rw2G014620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	419
Acc65I	GGTACC	1 cut(s)	495
AccB1I	GGYRCC	1 cut(s)	495
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	3 cut(s)	140, 462, 475
AcoI	YGGCCR	1 cut(s)	512
AcsI	RAATTY	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	416
AfaI	GTAC	2 cut(s)	234, 497
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	214, 274
AjnI	CCWGG	2 cut(s)	148, 372
AjuI	GAANNNNNNNTTGG	2 cut(s)	337, 369
AluBI	AGCT	7 cut(s)	110, 138, 217, 310, 394, 476, 519
AluI	AGCT	7 cut(s)	110, 138, 217, 310, 394, 476, 519
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	84, 407
AlwI	GGATC	3 cut(s)	140, 462, 475
AlwNI	CAGNNNCTG	1 cut(s)	310
AoxI	GGCC	3 cut(s)	57, 132, 512
ApoI	RAATTY	1 cut(s)	125
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
Asp700I	GAANNNNTTC	1 cut(s)	218
Asp718I	GGTACC	1 cut(s)	495
AspS9I	GGNCC	3 cut(s)	58, 132, 313
AsuII	TTCGAA	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	514
BamHI	GGATCC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	333
BccI	CCATC	3 cut(s)	305, 442, 458
BciT130I	CCWGG	2 cut(s)	150, 374
BciVI	GTATCC	2 cut(s)	495, 527
BcoDI	GTCTC	2 cut(s)	84, 407
BfaI	CTAG	3 cut(s)	107, 111, 492
BfuI	GTATCC	2 cut(s)	495, 527
Bme1390I	CCNGG	2 cut(s)	150, 374
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	3 cut(s)	58, 132, 313
BmiI	GGNNCC	3 cut(s)	133, 469, 497
BmrFI	CCNGG	2 cut(s)	150, 374
BmrI	ACTGGG	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	388
BpmI	CTGGAG	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	160, 347
Bsa29I	ATCGAT	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	3 cut(s)	98, 265, 383
Bse3DI	GCAATG	1 cut(s)	432
BseBI	CCWGG	2 cut(s)	150, 374
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	2 cut(s)	10, 211
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMI	GCAATG	1 cut(s)	432
BseNI	ACTGG	3 cut(s)	98, 265, 383
BseRI	GAGGAG	1 cut(s)	202
BshFI	GGCC	3 cut(s)	59, 134, 514
BshNI	GGYRCC	1 cut(s)	495
BshVI	ATCGAT	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	499
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	2 cut(s)	84, 407
BsmBI	CGTCTC	1 cut(s)	407
BsnI	GGCC	3 cut(s)	59, 134, 514
Bsp119I	TTCGAA	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp1407I	TGTACA	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	145, 467
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	3 cut(s)	59, 134, 514
BspDI	ATCGAT	1 cut(s)	165
BspLI	GGNNCC	3 cut(s)	133, 469, 497
BspPI	GGATC	3 cut(s)	140, 462, 475
BspT104I	TTCGAA	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	432
BsrGI	TGTACA	1 cut(s)	232
BsrI	ACTGG	3 cut(s)	98, 265, 383
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	2 cut(s)	145, 467
BssNI	GRCGYC	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	2 cut(s)	150, 374
Bst4CI	ACNGT	1 cut(s)	546
BstACI	GRCGYC	1 cut(s)	416
BstAUI	TGTACA	1 cut(s)	232
BstBI	TTCGAA	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	136
BstF5I	GGATG	2 cut(s)	10, 211
BstKTI	GATC	2 cut(s)	148, 470
BstMAI	GTCTC	2 cut(s)	84, 407
BstMBI	GATC	2 cut(s)	145, 467
BstNI	CCWGG	2 cut(s)	150, 374
BstSCI	CCNGG	2 cut(s)	148, 372
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
Bsu15I	ATCGAT	1 cut(s)	165
BsuI	GTATCC	2 cut(s)	495, 527
BsuRI	GGCC	3 cut(s)	59, 134, 514
BsuTUI	ATCGAT	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	10, 211
BtsIMutI	CAGTG	1 cut(s)	551
Cac8I	GCNNGC	1 cut(s)	136
CaiI	CAGNNNCTG	1 cut(s)	310
Cfr13I	GGNCC	3 cut(s)	58, 132, 313
ClaI	ATCGAT	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	233, 496
CviQI	GTAC	2 cut(s)	233, 496
DpnI	GATC	2 cut(s)	147, 469
DpnII	GATC	2 cut(s)	145, 467
EaeI	YGGCCR	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	148, 372
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
Esp3I	CGTCTC	1 cut(s)	407
FaiI	YATR	4 cut(s)	117, 369, 457, 511
FblI	GTMKAC	1 cut(s)	261
FokI	GGATG	2 cut(s)	17, 218
FspBI	CTAG	3 cut(s)	107, 111, 492
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	3 cut(s)	59, 134, 514
HapII	CCGG	1 cut(s)	499
Hin1I	GRCGYC	1 cut(s)	416
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HindIII	AAGCTT	2 cut(s)	215, 474
HinfI	GANTC	2 cut(s)	247, 293
HpaII	CCGG	1 cut(s)	499
Hpy166II	GTNNAC	2 cut(s)	174, 262
Hpy188I	TCNGA	1 cut(s)	472
Hpy188III	TCNNGA	2 cut(s)	271, 326
Hpy8I	GTNNAC	2 cut(s)	174, 262
HpyAV	CCTTC	3 cut(s)	70, 403, 535
HpyCH4III	ACNGT	1 cut(s)	546
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	1 cut(s)	425
HpySE526I	ACGT	1 cut(s)	416
Hsp92I	GRCGYC	1 cut(s)	416
KpnI	GGTACC	1 cut(s)	499
Kzo9I	GATC	2 cut(s)	145, 467
MaeI	CTAG	3 cut(s)	107, 111, 492
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	4 cut(s)	319, 363, 385, 487
MalI	GATC	2 cut(s)	147, 469
MboI	GATC	2 cut(s)	145, 467
MboII	GAAGA	1 cut(s)	286
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	1 cut(s)	333
MlsI	TGGCCA	1 cut(s)	514
MluCI	AATT	3 cut(s)	125, 241, 345
MluNI	TGGCCA	1 cut(s)	514
MnlI	CCTC	3 cut(s)	62, 150, 180
Mox20I	TGGCCA	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	514
Msp20I	TGGCCA	1 cut(s)	514
MspI	CCGG	1 cut(s)	499
MspR9I	CCNGG	2 cut(s)	150, 374
MunI	CAATTG	1 cut(s)	345
MvaI	CCWGG	2 cut(s)	150, 374
NdeII	GATC	2 cut(s)	145, 467
NlaIV	GGNNCC	3 cut(s)	133, 469, 497
NmuCI	GTSAC	1 cut(s)	363
NspV	TTCGAA	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	413
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	247, 293
PfoI	TCCNGGA	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	148, 372
PspGI	CCWGG	2 cut(s)	148, 372
PspN4I	GGNNCC	3 cut(s)	133, 469, 497
PspPI	GGNCC	3 cut(s)	58, 132, 313
PstNI	CAGNNNCTG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	467
RsaI	GTAC	2 cut(s)	234, 497
RsaNI	GTAC	2 cut(s)	233, 496
Sau3AI	GATC	2 cut(s)	145, 467
Sau96I	GGNCC	3 cut(s)	58, 132, 313
ScrFI	CCNGG	2 cut(s)	150, 374
SduI	GDGCHC	1 cut(s)	333
SfuI	TTCGAA	1 cut(s)	245
SinI	GGWCC	1 cut(s)	313
SmlI	CTYRAG	2 cut(s)	139, 326
SmoI	CTYRAG	2 cut(s)	139, 326
Sse9I	AATT	3 cut(s)	125, 241, 345
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	3 cut(s)	107, 111, 492
StyD4I	CCNGG	2 cut(s)	148, 372
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	546
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	4 cut(s)	165, 245, 300, 407
TasI	AATT	3 cut(s)	125, 241, 345
TatI	WGTACW	1 cut(s)	232
TfiI	GAWTC	2 cut(s)	247, 293
TscAI	CASTG	1 cut(s)	551
TseFI	GTSAC	1 cut(s)	363
Tsp45I	GTSAC	1 cut(s)	363
TspDTI	ATGAA	2 cut(s)	89, 306
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	551
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	3 cut(s)	107, 111, 492
ZraI	GACGTC	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.