Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003797

Physical Location & Seq

Genomic Coordinates Forward (+)

11772819 .. 11781791

Gene Structure 8973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0135800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGCCTCATCGGTTATCGCACTCAGCTCCTCGGCCAAAAAAGTGTCCATCACCACAGTTTCGAAACCATCTCAGCCAGTCAGCCTTTGTTCTTCCCCAATTTCTGAAAACCCAGCCCCATTATCAACGATTCAACCCCATACCTGCCCGTTCCAAAGCGGACGTCCACACTTTGCTAAAGTGCGGACGGCGACGCAGCGGAGGCTTTCCAGGCGGCGACGGCGGCTCGGGGCTTGGCGGACGGAGGCCGGAGGCTTGGCGGACGGGTCTGGGCAGCGTTCGAGGTCGGAGGAGGTCCGAGTTGCAGGTTATGGCAGCAACCCGACCTGCAACTGCAGGTTTTCTGGGCAGCGCTGCAACGACGTCGCCGACGACTCCACCGATTGCAGACCTCTCCGCTCGACCCCTGGCGTCCTTCCGGCAACCCCCGCCGCTCTGTCACGCCCCGAGCAGAGCTGCAGCAGCGCCGTCCGCACTTTCGTTAAAGTGCGGACGTCCTCTTTGGAACGCCTCCAGCGTCTCATGCTCCAGTGGTTGGGAGCAAGGATTTGGTGCAAGAGGTCAGGAGTTTGAACCTTGCCTCTTACCAGATTGTTGTGTATTTTGCATATTGGGCCCGAAAAGCCCGAAGCCCGAACCGGCCCGTTTGGGATCGAGCTCCTCTCCGGTTCAGGAGAATGACCGAAAAGAACTAAGAGGGATAAAAATCAGCTCTTGCAGGGTTGAGTGCTCCACGCCTGCTCCACATCGCAGACTTTTGAACCAAAAAAAAGAGAGTTTCGCAAATAAAAAGGTTGACATCCAAAACAAGACGAGCAGAGATTTTGAACTCGGAGGAGAGAGTGCGACTAAGATAAAGGAGGGAGGAGGAGGGGGGGGGGGGGCAAATGAGATAAAATACAGCCCCGGCAAGGTCAACTCATTTGCATGGGATTTTGAACCCAAAGACAGTGATAAAACAAGTAACAGTGCTCCACATCGCAGACTTTTGAACCAAAAAGAGAGTTTCGCAAATAAAAAGGTTGACATCCAAATCGAGACGAGCAGGTTAAACTACACCCCTTTCAAGGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010586 GO:0010587 GO:0016070 GO:0016592 GO:0016787 GO:0016788 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T RRM_1

Protein Analysis

358

Amino Acids

38.78

Weight (kDa)

10.14

Isoelectric Point (pI)

69.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50090 AT3G50100 AT3G50100 AT5G67240 AT5G67240 AT5G67240 AT5G67240
fragaria_vesca	FvH4_1g16590 FvH4_1g16590 FvH4_4g28290
malus_domestica	MD02G1178000.v1.1 MD15G1287900.v1.1
prunus_persica	Prupe.6G230000_v2.0.a1
pyrus_communis	pycom02g14410 pycom15g25140
rosa_chinensis	RchiOBHm_Chr2g0106501
rosa_laevigata	RLG00000017507
rosa_roxburghii	Rroxscaffold_2G00137120 Rroxscaffold_3G00227560
rosa_rugosa	Rorug02G0135700 Rorug02G0135800 Rorug02G0135900 Rorug02G0136000 Rorug05G0123100 Rorug05G0252900 Rorug05G0347700
rosa_samantha	Rh2AG187300 Rh2BG198100 Rh2BG614000 Rh2CG192300 Rh2DG193400 Rh5BG226200
rosa_wichuraiana	Rw2G014600 Rw2G014620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	165, 365, 496
Acc36I	ACCTGC	5 cut(s)	151, 295, 326, 334, 1035
AccB7I	CCANNNNNTGG	1 cut(s)	534
AccBSI	CCGCTC	2 cut(s)	398, 433
AclWI	GGATC	1 cut(s)	658
AcoI	YGGCCR	1 cut(s)	32
AcyI	GRCGYC	4 cut(s)	162, 362, 410, 493
AfeI	AGCGCT	1 cut(s)	352
AfiI	CCNNNNNNNGG	4 cut(s)	534, 910, 1066, 1067
AgsI	TTSAA	7 cut(s)	133, 572, 760, 827, 938, 991, 1066
AjnI	CCWGG	2 cut(s)	208, 405
AluBI	AGCT	4 cut(s)	26, 455, 657, 711
AluI	AGCT	4 cut(s)	26, 455, 657, 711
Alw21I	GWGCWC	3 cut(s)	659, 731, 973
Alw26I	GTCTC	2 cut(s)	523, 1031
AlwI	GGATC	1 cut(s)	658
Ama87I	CYCGRG	2 cut(s)	226, 445
Aor51HI	AGCGCT	1 cut(s)	352
AoxI	GGCC	4 cut(s)	32, 245, 613, 639
ApaI	GGGCCC	1 cut(s)	617
ApeKI	GCWGC	8 cut(s)	195, 273, 314, 348, 353, 455, 458, 461
ArsI	GACNNNNNNTTYG	4 cut(s)	147, 179, 483, 515
AspLEI	GCGC	2 cut(s)	353, 466
AspS9I	GGNCC	4 cut(s)	294, 613, 614, 640
AsuC2I	CCSGG	1 cut(s)	906
AsuHPI	GGTGA	1 cut(s)	42
AsuII	TTCGAA	1 cut(s)	61
AvaI	CYCGRG	2 cut(s)	226, 445
AvaII	GGWCC	1 cut(s)	294
BaeGI	GKGCMC	1 cut(s)	617
BanII	GRGCYC	2 cut(s)	617, 659
Bbv12I	GWGCWC	3 cut(s)	659, 731, 973
BbvI	GCAGC	8 cut(s)	207, 285, 326, 340, 360, 442, 470, 473
BccI	CCATC	2 cut(s)	55, 75
BceAI	ACGGC	3 cut(s)	203, 235, 451
BcgI	CGANNNNNNTGC	2 cut(s)	345, 379
BciT130I	CCWGG	2 cut(s)	210, 407
BcnI	CCSGG	1 cut(s)	906
BcoDI	GTCTC	2 cut(s)	523, 1031
BfmI	CTRYAG	2 cut(s)	333, 456
BfoI	RGCGCY	2 cut(s)	354, 467
BfuAI	ACCTGC	5 cut(s)	151, 295, 326, 334, 1035
Bme1390I	CCNGG	3 cut(s)	210, 407, 906
Bme18I	GGWCC	1 cut(s)	294
BmeT110I	CYCGRG	2 cut(s)	226, 445
BmgT120I	GGNCC	4 cut(s)	294, 613, 614, 640
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	3 cut(s)	210, 407, 906
BplI	GAGNNNNNCTC	2 cut(s)	646, 678
BpmI	CTGGAG	2 cut(s)	496, 511
Bpu14I	TTCGAA	1 cut(s)	61
BpuMI	CCSGG	1 cut(s)	906
BsaBI	GATNNNNATC	1 cut(s)	704
BsaHI	GRCGYC	4 cut(s)	162, 362, 410, 493
BsaJI	CCNNGG	3 cut(s)	29, 405, 904
BsaWI	WCCGGW	1 cut(s)	664
BsaXI	ACNNNNNCTCC	2 cut(s)	724, 754
Bsc4I	CCNNNNNNNGG	4 cut(s)	534, 910, 1066, 1067
Bse118I	RCCGGY	1 cut(s)	637
Bse1I	ACTGG	2 cut(s)	76, 528
Bse8I	GATNNNNATC	1 cut(s)	704
BseBI	CCWGG	2 cut(s)	210, 407
BseDI	CCNNGG	3 cut(s)	29, 405, 904
BseGI	GGATG	2 cut(s)	798, 1026
BseJI	GATNNNNATC	1 cut(s)	704
BseLI	CCNNNNNNNGG	4 cut(s)	534, 910, 1066, 1067
BseMII	CTCAG	2 cut(s)	36, 85
BseNI	ACTGG	2 cut(s)	76, 528
BseRI	GAGGAG	6 cut(s)	18, 304, 649, 849, 879, 882
BseSI	GKGCMC	1 cut(s)	617
BseXI	GCAGC	8 cut(s)	207, 285, 326, 340, 360, 442, 470, 473
BseYI	CCCAGC	1 cut(s)	111
BshFI	GGCC	4 cut(s)	34, 247, 615, 641
BsiHKAI	GWGCWC	3 cut(s)	659, 731, 973
BsiHKCI	CYCGRG	2 cut(s)	226, 445
BsiSI	CCGG	5 cut(s)	248, 418, 638, 665, 906
BslI	CCNNNNNNNGG	4 cut(s)	534, 910, 1066, 1067
BsmAI	GTCTC	2 cut(s)	523, 1031
BsmBI	CGTCTC	2 cut(s)	523, 1031
BsnI	GGCC	4 cut(s)	34, 247, 615, 641
BsoBI	CYCGRG	2 cut(s)	226, 445
Bsp119I	TTCGAA	1 cut(s)	61
Bsp120I	GGGCCC	1 cut(s)	613
Bsp1286I	GDGCHC	4 cut(s)	617, 659, 731, 973
Bsp143I	GATC	1 cut(s)	650
BspANI	GGCC	4 cut(s)	34, 247, 615, 641
BspCNI	CTCAG	2 cut(s)	35, 84
BspLI	GGNNCC	1 cut(s)	615
BspMAI	CTGCAG	2 cut(s)	337, 460
BspMI	ACCTGC	5 cut(s)	151, 295, 326, 334, 1035
BspPI	GGATC	1 cut(s)	658
BspT104I	TTCGAA	1 cut(s)	61
BsrBI	CCGCTC	2 cut(s)	398, 433
BsrFI	RCCGGY	1 cut(s)	637
BsrI	ACTGG	2 cut(s)	76, 528
BssAI	RCCGGY	1 cut(s)	637
BssECI	CCNNGG	3 cut(s)	29, 405, 904
BssMI	GATC	1 cut(s)	650
BssNI	GRCGYC	4 cut(s)	162, 362, 410, 493
Bst2UI	CCWGG	2 cut(s)	210, 407
Bst4CI	ACNGT	3 cut(s)	57, 950, 968
BstACI	GRCGYC	4 cut(s)	162, 362, 410, 493
BstBI	TTCGAA	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	738
BstDEI	CTNAG	4 cut(s)	22, 71, 692, 849
BstF5I	GGATG	2 cut(s)	798, 1026
BstH2I	RGCGCY	2 cut(s)	354, 467
BstHHI	GCGC	2 cut(s)	353, 466
BstKTI	GATC	1 cut(s)	653
BstMAI	GTCTC	2 cut(s)	523, 1031
BstMBI	GATC	1 cut(s)	650
BstNI	CCWGG	2 cut(s)	210, 407
BstSCI	CCNGG	3 cut(s)	208, 405, 904
BstSFI	CTRYAG	2 cut(s)	333, 456
BstSLI	GKGCMC	1 cut(s)	617
BstV1I	GCAGC	8 cut(s)	207, 285, 326, 340, 360, 442, 470, 473
BsuRI	GGCC	4 cut(s)	34, 247, 615, 641
BtgZI	GCGATG	2 cut(s)	731, 962
BtsCI	GGATG	2 cut(s)	798, 1026
BtsIMutI	CAGTG	3 cut(s)	535, 955, 973
BveI	ACCTGC	5 cut(s)	151, 295, 326, 334, 1035
Cac8I	GCNNGC	1 cut(s)	738
CfoI	GCGC	2 cut(s)	353, 466
Cfr10I	RCCGGY	1 cut(s)	637
Cfr13I	GGNCC	4 cut(s)	294, 613, 614, 640
CseI	GACGC	3 cut(s)	201, 399, 505
CviAII	CATG	2 cut(s)	522, 927
DdeI	CTNAG	4 cut(s)	22, 71, 692, 849
DpnI	GATC	1 cut(s)	652
DpnII	GATC	1 cut(s)	650
EaeI	YGGCCR	1 cut(s)	32
EciI	GGCGGA	2 cut(s)	252, 274
Ecl136II	GAGCTC	1 cut(s)	657
Eco24I	GRGCYC	2 cut(s)	617, 659
Eco47I	GGWCC	1 cut(s)	294
Eco47III	AGCGCT	1 cut(s)	352
Eco53kI	GAGCTC	1 cut(s)	657
Eco88I	CYCGRG	2 cut(s)	226, 445
EcoICRI	GAGCTC	1 cut(s)	657
EcoRII	CCWGG	2 cut(s)	208, 405
EcoT38I	GRGCYC	2 cut(s)	617, 659
Esp3I	CGTCTC	2 cut(s)	523, 1031
FaeI	CATG	2 cut(s)	525, 930
FaiI	YATR	5 cut(s)	140, 311, 523, 608, 928
FatI	CATG	2 cut(s)	521, 926
FauI	CCCGC	1 cut(s)	435
FokI	GGATG	2 cut(s)	785, 1013
FriOI	GRGCYC	2 cut(s)	617, 659
GlaI	GCGC	2 cut(s)	352, 465
GsaI	CCCAGC	1 cut(s)	115
GsuI	CTGGAG	2 cut(s)	496, 511
HaeII	RGCGCY	2 cut(s)	354, 467
HaeIII	GGCC	4 cut(s)	34, 247, 615, 641
HapII	CCGG	5 cut(s)	248, 418, 638, 665, 906
HgaI	GACGC	3 cut(s)	201, 399, 505
HhaI	GCGC	2 cut(s)	353, 466
Hin1I	GRCGYC	4 cut(s)	162, 362, 410, 493
Hin1II	CATG	2 cut(s)	525, 930
Hin6I	GCGC	2 cut(s)	351, 464
HinP1I	GCGC	2 cut(s)	351, 464
HincII	GTYRAC	3 cut(s)	796, 916, 1024
HindII	GTYRAC	3 cut(s)	796, 916, 1024
HinfI	GANTC	2 cut(s)	129, 373
HpaII	CCGG	5 cut(s)	248, 418, 638, 665, 906
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	4 cut(s)	166, 796, 916, 1024
Hpy188I	TCNGA	4 cut(s)	105, 288, 298, 833
Hpy188III	TCNNGA	3 cut(s)	563, 671, 1036
Hpy8I	GTNNAC	4 cut(s)	166, 796, 916, 1024
Hpy99I	CGWCG	5 cut(s)	195, 221, 364, 367, 373
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	3 cut(s)	57, 950, 968
HpyCH4IV	ACGT	3 cut(s)	162, 362, 493
HpyF3I	CTNAG	4 cut(s)	22, 71, 692, 849
HpySE526I	ACGT	3 cut(s)	162, 362, 493
Hsp92I	GRCGYC	4 cut(s)	162, 362, 410, 493
Hsp92II	CATG	2 cut(s)	525, 930
HspAI	GCGC	2 cut(s)	351, 464
Kzo9I	GATC	1 cut(s)	650
LmnI	GCTCC	7 cut(s)	31, 530, 538, 662, 734, 745, 976
Lsp1109I	GCAGC	8 cut(s)	207, 285, 326, 340, 360, 442, 470, 473
MaeII	ACGT	3 cut(s)	162, 362, 493
MaeIII	GTNAC	2 cut(s)	437, 962
MalI	GATC	1 cut(s)	652
MbiI	CCGCTC	2 cut(s)	398, 433
MboI	GATC	1 cut(s)	650
MboII	GAAGA	1 cut(s)	83
MhlI	GDGCHC	4 cut(s)	617, 659, 731, 973
MluCI	AATT	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	266
MseI	TTAA	2 cut(s)	482, 1049
MslI	CAYNNNNRTG	1 cut(s)	925
MspA1I	CMGCKG	1 cut(s)	198
MspI	CCGG	5 cut(s)	248, 418, 638, 665, 906
MspR9I	CCNGG	3 cut(s)	210, 407, 906
MvaI	CCWGG	2 cut(s)	210, 407
NciI	CCSGG	1 cut(s)	906
NdeII	GATC	1 cut(s)	650
NlaIII	CATG	2 cut(s)	525, 930
NlaIV	GGNNCC	1 cut(s)	615
NmeAIII	GCCGAG	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	437
NspV	TTCGAA	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	4 cut(s)	365, 368, 377, 513
PfeI	GAWTC	1 cut(s)	129
PflMI	CCANNNNNTGG	1 cut(s)	534
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp124BI	GAGCTC	1 cut(s)	659
Psp6I	CCWGG	2 cut(s)	208, 405
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	2 cut(s)	208, 405
PspN4I	GGNNCC	1 cut(s)	615
PspOMI	GGGCCC	1 cut(s)	613
PspPI	GGNCC	4 cut(s)	294, 613, 614, 640
PstI	CTGCAG	2 cut(s)	337, 460
RseI	CAYNNNNRTG	1 cut(s)	925
SacI	GAGCTC	1 cut(s)	659
SaqAI	TTAA	2 cut(s)	482, 1049
Sau3AI	GATC	1 cut(s)	650
Sau96I	GGNCC	4 cut(s)	294, 613, 614, 640
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	3 cut(s)	210, 407, 906
SduI	GDGCHC	4 cut(s)	617, 659, 731, 973
SfcI	CTRYAG	2 cut(s)	333, 456
SfuI	TTCGAA	1 cut(s)	61
SinI	GGWCC	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	925
Sse9I	AATT	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	659
StyD4I	CCNGG	3 cut(s)	208, 405, 904
TaaI	ACNGT	3 cut(s)	57, 950, 968
TaiI	ACGT	3 cut(s)	165, 365, 496
TaqI	TCGA	5 cut(s)	61, 280, 400, 653, 1035
TaqII	GACCGA	1 cut(s)	696
TasI	AATT	1 cut(s)	98
TauI	GCSGC	3 cut(s)	216, 225, 433
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	2 cut(s)	482, 1049
Tru9I	TTAA	2 cut(s)	482, 1049
TscAI	CASTG	3 cut(s)	535, 955, 973
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	8 cut(s)	195, 273, 314, 348, 353, 455, 458, 461
Tsp45I	GTSAC	1 cut(s)	437
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	3 cut(s)	535, 955, 973
Van91I	CCANNNNNTGG	1 cut(s)	534
VpaK11BI	GGWCC	1 cut(s)	294
ZraI	GACGTC	3 cut(s)	163, 363, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.