Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003797

Physical Location & Seq

Genomic Coordinates Reverse (-)

26269916 .. 26294023

Gene Structure 24108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG226200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGATCTGGAGAAGGAGAAGGACAACCAGCGCTGGTGGCGAGTATAGAAACATAAACTTCTTCCGTTGGCAATATTATAAAAAAATTTGTCACGTAATTTCTTTAATTATAGAAAAGGTCAAACTGGATGAACGAGTAAACCCCAAGAAAGAAGTTGCTGATTACAGAACTGTTATTACAGGAATGTATGCTGCAGATTTGGCTGGTGTTACATGTACTTTAGCTGATATACAGAAATCCTTCAAGAAGTTGTTATCAGATGGAACTATTTTAGTTGGACACAGTTTGAATAATGACCTGCAGGCATTGAAGATAGACCATATATTAATGGTGATTGATACCGCATATGTATTTAGATATTTGGATGGGCCTATTTCTAGAAACCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010586 GO:0010587 GO:0016070 GO:0016592 GO:0016787 GO:0016788 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T RRM_1

Protein Analysis

130

Amino Acids

15.02

Weight (kDa)

9.54

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50090 AT3G50100 AT3G50100 AT5G67240 AT5G67240 AT5G67240 AT5G67240
fragaria_vesca	FvH4_1g16590 FvH4_1g16590 FvH4_4g28290
malus_domestica	MD02G1178000.v1.1 MD15G1287900.v1.1
prunus_persica	Prupe.6G230000_v2.0.a1
pyrus_communis	pycom02g14410 pycom15g25140
rosa_chinensis	RchiOBHm_Chr2g0106501
rosa_laevigata	RLG00000017507
rosa_roxburghii	Rroxscaffold_2G00137120 Rroxscaffold_3G00227560
rosa_rugosa	Rorug02G0135700 Rorug02G0135800 Rorug02G0135900 Rorug02G0136000 Rorug05G0123100 Rorug05G0252900 Rorug05G0347700
rosa_samantha	Rh2AG187300 Rh2BG198100 Rh2BG614000 Rh2CG192300 Rh2DG193400 Rh5BG226200
rosa_wichuraiana	Rw2G014600 Rw2G014620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
Acc36I	ACCTGC	1 cut(s)	306
AciI	CCGC	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	84
AfaI	GTAC	1 cut(s)	217
AfeI	AGCGCT	1 cut(s)	31
AflIII	ACRYGT	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	244, 289, 310
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
Aor51HI	AGCGCT	1 cut(s)	31
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	84
AseI	ATTAAT	1 cut(s)	326
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	343
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	254, 359
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	2 cut(s)	192, 299
BfoI	RGCGCY	1 cut(s)	33
BfuAI	ACCTGC	1 cut(s)	306
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	28
BsaAI	YACGTR	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	133, 370
BseNI	ACTGG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	1 cut(s)	370
BsnI	GGCC	1 cut(s)	370
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	370
BspMAI	CTGCAG	2 cut(s)	196, 303
BspMI	ACCTGC	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	3
Bst4CI	ACNGT	2 cut(s)	172, 284
BstBAI	YACGTR	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	133, 370
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 200
BstNSI	RCATGY	1 cut(s)	216
BstSFI	CTRYAG	2 cut(s)	192, 299
BstV1I	GCAGC	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	133, 370
BveI	ACCTGC	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	1 cut(s)	213
CviJI	RGCY	3 cut(s)	203, 224, 370
CviKI_1	RGCY	3 cut(s)	203, 224, 370
CviQI	GTAC	1 cut(s)	216
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco47III	AGCGCT	1 cut(s)	31
FaeI	CATG	1 cut(s)	216
FatI	CATG	1 cut(s)	212
FauNDI	CATATG	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	2 cut(s)	140, 377
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	28
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	370
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	216
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	3 cut(s)	7, 244, 378
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	3 cut(s)	6, 12, 250
HpyCH4III	ACNGT	2 cut(s)	172, 284
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	194, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 200
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	216
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	7 cut(s)	18, 40, 110, 165, 189, 287, 311
Lsp1109I	GCAGC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	89, 208
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	52, 322
MluCI	AATT	3 cut(s)	84, 96, 105
MmeI	TCCRAC	1 cut(s)	256
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	2 cut(s)	104, 326
MwoI	GCNNNNNNNGC	2 cut(s)	36, 200
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	89
NspI	RCATGY	1 cut(s)	216
PciI	ACATGT	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	193
Ppu21I	YACGTR	1 cut(s)	94
PscI	ACATGT	1 cut(s)	212
PshBI	ATTAAT	1 cut(s)	326
PsiI	TTATAA	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	368
PsrI	GAACNNNNNNTAC	2 cut(s)	160, 192
PstI	CTGCAG	2 cut(s)	196, 303
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	104, 326
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	368
SbfI	CCTGCAGG	1 cut(s)	303
SdaI	CCTGCAGG	1 cut(s)	303
SetI	ASST	5 cut(s)	96, 120, 226, 300, 387
SfcI	CTRYAG	2 cut(s)	192, 299
Sse8387I	CCTGCAGG	1 cut(s)	303
Sse9I	AATT	3 cut(s)	84, 96, 105
SsiI	CCGC	1 cut(s)	342
SspI	AATATT	1 cut(s)	74
SspMI	CTAG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	172, 284
TaiI	ACGT	1 cut(s)	96
TasI	AATT	3 cut(s)	84, 96, 105
TatI	WGTACW	1 cut(s)	215
Tru1I	TTAA	2 cut(s)	104, 326
Tru9I	TTAA	2 cut(s)	104, 326
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	1 cut(s)	53
VspI	ATTAAT	1 cut(s)	326
XapI	RAATTY	1 cut(s)	84
XbaI	TCTAGA	1 cut(s)	377
XceI	RCATGY	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.