Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003797

Physical Location & Seq

Genomic Coordinates Forward (+)

28978260 .. 28980464

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCAGTACTGGGTAGTTACGAAGCTCAAGAAGAAGTCGAAGGAGATGATATCAAATGTGATGCTTGCTGTTGATTGCGAGATGGTTCTATGTGAAGATGGAACTGAAGCTTTAGTGAGGGTGTGCGTTGTGGATCGGAACTTGGAGGTTAAACTGGATGAACTAGTGAACCCTGACAAAGAAACTGAGATTACAGGAGTGGCTGCTTCAGAGTTGGCTGGAGTTACTTGTATTTTAGCTGATATACAGAAATCTTTCAAGAAGTTGCTGTCAGATGGGACTATCTTAATTGGGCACAGTTTGTGTAACGACCTGCAGGATGATGCCTGTGCTGCAATGAAACTTGTTCTTGCTAAGGTGGAGCGTGAAGTTGGTGATACCATTCCGTCAGTTCAGGAGGATTACCTCAAATTAATACGGCCAAGCTACTCCTTCACAGGATACCAAGAACAGTGCCTTCAAATGAGTTGCATAAAGCCATACCTGGGAACTTCAGAAGTCAAGAAGCCATCGATTAAAGCCAAAGGAGATATATATTCTGCCTTCGCTATATTTAAGAATGAACAAGAAGCGCAGCCAGCATATGAAAAACTCAAAGGCACCCAAGAAGAGGACTCAACTGGAAAGCCACAAAAACTTATTGAATTTAAGGTCAGCACAGGGGTAATTACTGATTTCTATGTTCGTAAAATGGCACATAATGGTTCCTTAGACCAAGTCTCTTCTAAGAGAGCTCTCGAAGTTGAGGAGAGCACAGGTGCAAATAAGAAACAAAAGACAGGTCAGACAATAGAAGATGAGACGATGCCAGACTTAGACCACTGTTGGATCATCTCAAAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010586 GO:0010587 GO:0016070 GO:0016592 GO:0016787 GO:0016788 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T RRM_1

Protein Analysis

282

Amino Acids

31.32

Weight (kDa)

5.26

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50090 AT3G50100 AT3G50100 AT5G67240 AT5G67240 AT5G67240 AT5G67240
fragaria_vesca	FvH4_1g16590 FvH4_1g16590 FvH4_4g28290
malus_domestica	MD02G1178000.v1.1 MD15G1287900.v1.1
prunus_persica	Prupe.6G230000_v2.0.a1
pyrus_communis	pycom02g14410 pycom15g25140
rosa_chinensis	RchiOBHm_Chr2g0106501
rosa_laevigata	RLG00000017507
rosa_roxburghii	Rroxscaffold_2G00137120 Rroxscaffold_3G00227560
rosa_rugosa	Rorug02G0135700 Rorug02G0135800 Rorug02G0135900 Rorug02G0136000 Rorug05G0123100 Rorug05G0252900 Rorug05G0347700
rosa_samantha	Rh2AG187300 Rh2BG198100 Rh2BG614000 Rh2CG192300 Rh2DG193400 Rh5BG226200
rosa_wichuraiana	Rw2G014600 Rw2G014620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	599
AclWI	GGATC	2 cut(s)	141, 836
AcoI	YGGCCR	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	3 cut(s)	126, 192, 477
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	485, 610
AgsI	TTSAA	3 cut(s)	259, 461, 644
AhlI	ACTAGT	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	5 cut(s)	25, 110, 239, 426, 734
AluI	AGCT	5 cut(s)	25, 110, 239, 426, 734
Alw21I	GWGCWC	2 cut(s)	736, 755
Alw26I	GTCTC	2 cut(s)	724, 794
AlwI	GGATC	2 cut(s)	141, 836
AoxI	GGCC	1 cut(s)	419
ApeKI	GCWGC	3 cut(s)	203, 332, 574
ApoI	RAATTY	1 cut(s)	644
ArsI	GACNNNNNNTTYG	2 cut(s)	766, 798
AseI	ATTAAT	1 cut(s)	413
Asp700I	GAANNNNTTC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	574
AsuHPI	GGTGA	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	736
Bbv12I	GWGCWC	2 cut(s)	736, 755
BbvI	GCAGC	3 cut(s)	190, 319, 586
BccI	CCATC	4 cut(s)	76, 92, 269, 517
BceAI	ACGGC	1 cut(s)	434
BciT130I	CCWGG	1 cut(s)	485
BciVI	GTATCC	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	724, 794
BcuI	ACTAGT	1 cut(s)	163
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	314
BfuAI	ACCTGC	1 cut(s)	321
BfuI	GTATCC	1 cut(s)	434
BisI	GCNGC	3 cut(s)	204, 333, 575
BlsI	GCNGC	3 cut(s)	205, 334, 576
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	601, 706
BmrFI	CCNGG	1 cut(s)	485
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	3 cut(s)	51, 313, 795
BmuI	ACTGGG	1 cut(s)	19
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	11
Bsa29I	ATCGAT	1 cut(s)	512
BsaJI	CCNNGG	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	2 cut(s)	485, 610
Bse1I	ACTGG	3 cut(s)	14, 159, 625
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	485
BseCI	ATCGAT	1 cut(s)	512
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	2 cut(s)	163, 325
BseLI	CCNNNNNNNGG	2 cut(s)	485, 610
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	3 cut(s)	14, 159, 625
BseRI	GAGGAG	1 cut(s)	761
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	3 cut(s)	190, 319, 586
BshFI	GGCC	1 cut(s)	421
BshNI	GGYRCC	1 cut(s)	599
BshVI	ATCGAT	1 cut(s)	512
BsiHKAI	GWGCWC	2 cut(s)	736, 755
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	485, 610
BsmAI	GTCTC	2 cut(s)	724, 794
BsmBI	CGTCTC	1 cut(s)	794
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	421
Bsp1286I	GDGCHC	3 cut(s)	297, 736, 755
Bsp143I	GATC	2 cut(s)	133, 828
BspANI	GGCC	1 cut(s)	421
BspCNI	CTCAG	1 cut(s)	178
BspDI	ATCGAT	1 cut(s)	512
BspLI	GGNNCC	2 cut(s)	601, 706
BspMAI	CTGCAG	1 cut(s)	318
BspMI	ACCTGC	1 cut(s)	321
BspPI	GGATC	2 cut(s)	141, 836
BspT107I	GGYRCC	1 cut(s)	599
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	3 cut(s)	14, 159, 625
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	2 cut(s)	133, 828
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	3 cut(s)	299, 453, 824
Bst6I	CTCTTC	2 cut(s)	603, 727
BstC8I	GCNNGC	2 cut(s)	66, 579
BstDEI	CTNAG	5 cut(s)	186, 354, 709, 726, 814
BstF5I	GGATG	2 cut(s)	163, 325
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	2 cut(s)	136, 831
BstMAI	GTCTC	2 cut(s)	724, 794
BstMBI	GATC	2 cut(s)	133, 828
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 578
BstNI	CCWGG	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	483
BstSFI	CTRYAG	1 cut(s)	314
BstSLI	GKGCMC	1 cut(s)	297
BstV1I	GCAGC	3 cut(s)	190, 319, 586
Bsu15I	ATCGAT	1 cut(s)	512
BsuI	GTATCC	1 cut(s)	434
BsuRI	GGCC	1 cut(s)	421
BsuTUI	ATCGAT	1 cut(s)	512
BtsCI	GGATG	2 cut(s)	163, 325
BtsIMutI	CAGTG	2 cut(s)	458, 820
BveI	ACCTGC	1 cut(s)	321
Cac8I	GCNNGC	2 cut(s)	66, 579
CfoI	GCGC	1 cut(s)	574
ClaI	ATCGAT	1 cut(s)	512
Csp6I	GTAC	1 cut(s)	7
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	5 cut(s)	186, 354, 709, 726, 814
DpnI	GATC	2 cut(s)	135, 830
DpnII	GATC	2 cut(s)	133, 828
EaeI	YGGCCR	1 cut(s)	419
Eam1104I	CTCTTC	2 cut(s)	603, 727
EarI	CTCTTC	2 cut(s)	603, 727
Ecl136II	GAGCTC	1 cut(s)	734
Eco24I	GRGCYC	1 cut(s)	736
Eco32I	GATATC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	734
Eco57I	CTGAAG	3 cut(s)	126, 192, 477
EcoICRI	GAGCTC	1 cut(s)	734
EcoRII	CCWGG	1 cut(s)	483
EcoRV	GATATC	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	736
Esp3I	CGTCTC	1 cut(s)	794
FaqI	GGGAC	1 cut(s)	292
FauNDI	CATATG	1 cut(s)	583
Fnu4HI	GCNGC	3 cut(s)	204, 333, 575
FokI	GGATG	2 cut(s)	170, 332
FriOI	GRGCYC	1 cut(s)	736
Fsp4HI	GCNGC	3 cut(s)	204, 333, 575
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	3 cut(s)	204, 333, 575
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	421
HhaI	GCGC	1 cut(s)	574
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	1 cut(s)	614
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	5 cut(s)	138, 211, 274, 496, 786
Hpy188III	TCNNGA	5 cut(s)	28, 259, 395, 502, 737
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	4 cut(s)	34, 442, 467, 553
HpyCH4III	ACNGT	3 cut(s)	299, 453, 824
HpyCH4V	TGCA	5 cut(s)	4, 316, 335, 471, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 578
HpyF3I	CTNAG	5 cut(s)	186, 354, 709, 726, 814
HspAI	GCGC	1 cut(s)	572
Kzo9I	GATC	2 cut(s)	133, 828
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	3 cut(s)	190, 319, 586
LweI	GCATC	3 cut(s)	51, 313, 795
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	3 cut(s)	16, 223, 305
MalI	GATC	2 cut(s)	135, 830
MboI	GATC	2 cut(s)	133, 828
MboII	GAAGA	5 cut(s)	43, 107, 620, 714, 806
MhlI	GDGCHC	3 cut(s)	297, 736, 755
MluCI	AATT	4 cut(s)	288, 410, 644, 666
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	806
MnlI	CCTC	6 cut(s)	111, 139, 391, 416, 604, 739
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	6 cut(s)	150, 287, 413, 516, 555, 648
MspR9I	CCNGG	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	485
MwoI	GCNNNNNNNGC	2 cut(s)	332, 578
NdeI	CATATG	1 cut(s)	583
NdeII	GATC	2 cut(s)	133, 828
NlaIV	GGNNCC	2 cut(s)	601, 706
PdmI	GAANNNNTTC	1 cut(s)	254
PflFI	GACNNNGTC	1 cut(s)	716
PkrI	GCNGC	3 cut(s)	205, 334, 576
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
PshBI	ATTAAT	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	736
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	601, 706
PstI	CTGCAG	1 cut(s)	318
PsyI	GACNNNGTC	1 cut(s)	716
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	736
SaqAI	TTAA	6 cut(s)	150, 287, 413, 516, 555, 648
SatI	GCNGC	3 cut(s)	204, 333, 575
Sau3AI	GATC	2 cut(s)	133, 828
SbfI	CCTGCAGG	1 cut(s)	318
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	1 cut(s)	485
SdaI	CCTGCAGG	1 cut(s)	318
SduI	GDGCHC	3 cut(s)	297, 736, 755
SfaNI	GCATC	3 cut(s)	51, 313, 795
SfcI	CTRYAG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
SpeI	ACTAGT	1 cut(s)	163
Sse8387I	CCTGCAGG	1 cut(s)	318
Sse9I	AATT	4 cut(s)	288, 410, 644, 666
SspMI	CTAG	1 cut(s)	164
SstI	GAGCTC	1 cut(s)	736
StyD4I	CCNGG	1 cut(s)	483
TaaI	ACNGT	3 cut(s)	299, 453, 824
TaqI	TCGA	3 cut(s)	38, 512, 738
TasI	AATT	4 cut(s)	288, 410, 644, 666
TatI	WGTACW	1 cut(s)	6
Tru1I	TTAA	6 cut(s)	150, 287, 413, 516, 555, 648
Tru9I	TTAA	6 cut(s)	150, 287, 413, 516, 555, 648
TscAI	CASTG	2 cut(s)	458, 827
TseI	GCWGC	3 cut(s)	203, 332, 574
TspDTI	ATGAA	4 cut(s)	174, 353, 576, 600
TspGWI	ACGGA	1 cut(s)	375
TspRI	CASTG	2 cut(s)	458, 827
Tth111I	GACNNNGTC	1 cut(s)	716
VspI	ATTAAT	1 cut(s)	413
XapI	RAATTY	1 cut(s)	644
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	1 cut(s)	164
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.