Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003797

Physical Location & Seq

Genomic Coordinates Reverse (-)

11818857 .. 11819657

Gene Structure 801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0136000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGAGAGTAGTGCTAACATGCTTCGCAAGAAGAGCAGTACTAGGTGGATTCCTACTACAGATCATATAAGAATCCTCAAGGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAATGTCTATTATTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCATTTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTGCTTCTTCCGCTGGTGTGATGATTGCTTTTAACGGGCAGATGGGGAACTATGGCGGTTATGGATCTATGAACATGGAGAAGAGTGCTAGGGATTGTTCAATCTCAGCTGGAGGGGGAACTAGTTCTACTTTCTTTGAGATGAATGTAGAACAAACTTTCATGGAACAAAGAGGAGAAGATCACCAGGAGATTGAAACCCTTTCACTGTTTCCCGTGCATGGTGAGGACATCTTTGACAACATGAAGACTACTTACGATGGAGGTGGCGGTCACGGTGGTTGTTCTCACATTTCCCTTGAGCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGACTCGGCTTAGTAGCTTCGCGAGTGTAGGAACACTTAGAATTGCCCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010586 GO:0010587 GO:0016070 GO:0016592 GO:0016787 GO:0016788 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T RRM_1

Protein Analysis

266

Amino Acids

29.79

Weight (kDa)

8.33

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 91	5.6e-08	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50090 AT3G50100 AT3G50100 AT5G67240 AT5G67240 AT5G67240 AT5G67240
fragaria_vesca	FvH4_1g16590 FvH4_1g16590 FvH4_4g28290
malus_domestica	MD02G1178000.v1.1 MD15G1287900.v1.1
prunus_persica	Prupe.6G230000_v2.0.a1
pyrus_communis	pycom02g14410 pycom15g25140
rosa_chinensis	RchiOBHm_Chr2g0106501
rosa_laevigata	RLG00000017507
rosa_roxburghii	Rroxscaffold_2G00137120 Rroxscaffold_3G00227560
rosa_rugosa	Rorug02G0135700 Rorug02G0135800 Rorug02G0135900 Rorug02G0136000 Rorug05G0123100 Rorug05G0252900 Rorug05G0347700
rosa_samantha	Rh2AG187300 Rh2BG198100 Rh2BG614000 Rh2CG192300 Rh2DG193400 Rh5BG226200
rosa_wichuraiana	Rw2G014600 Rw2G014620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	403
Acc36I	ACCTGC	2 cut(s)	166, 403
AccII	CGCG	1 cut(s)	770
AccIII	TCCGGA	1 cut(s)	739
AciI	CCGC	4 cut(s)	411, 456, 669, 746
AclWI	GGATC	4 cut(s)	194, 372, 391, 472
AfaI	GTAC	2 cut(s)	91, 209
AfiI	CCNNNNNNNGG	1 cut(s)	620
AgsI	TTSAA	3 cut(s)	226, 501, 596
AhlI	ACTAGT	1 cut(s)	521
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	5 cut(s)	136, 199, 509, 726, 765
AluI	AGCT	5 cut(s)	136, 199, 509, 726, 765
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	4 cut(s)	194, 372, 391, 472
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	739
ApeKI	GCWGC	2 cut(s)	50, 703
Asp700I	GAANNNNTTC	1 cut(s)	523
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	3 cut(s)	344, 575, 635
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	262
BarI	GAAGNNNNNNTAC	2 cut(s)	638, 670
BbsI	GAAGAC	1 cut(s)	653
BbvI	GCAGC	2 cut(s)	62, 715
BccI	CCATC	3 cut(s)	26, 436, 653
BceAI	ACGGC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciT130I	CCWGG	1 cut(s)	587
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	3 cut(s)	93, 489, 522
BfmI	CTRYAG	2 cut(s)	108, 168
BfuAI	ACCTGC	2 cut(s)	166, 403
BisI	GCNGC	3 cut(s)	51, 704, 746
BlsI	GCNGC	3 cut(s)	52, 705, 747
BmcAI	AGTACT	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	587
Bme18I	GGWCC	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	3 cut(s)	6, 161, 744
BmrFI	CCNGG	1 cut(s)	587
BpiI	GAAGAC	1 cut(s)	653
BpmI	CTGGAG	2 cut(s)	179, 531
BpuEI	CTTGAG	2 cut(s)	113, 719
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	739
Bsc4I	CCNNNNNNNGG	1 cut(s)	620
BseAI	TCCGGA	1 cut(s)	739
BseBI	CCWGG	1 cut(s)	587
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 301
BseLI	CCNNNNNNNGG	1 cut(s)	620
BseMII	CTCAG	1 cut(s)	519
BseRI	GAGGAG	1 cut(s)	588
BseSI	GKGCMC	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	62, 715
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	770
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	740
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	620
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	262, 309
Bsp13I	TCCGGA	1 cut(s)	739
Bsp143I	GATC	8 cut(s)	112, 186, 216, 317, 364, 383, 464, 580
Bsp68I	TCGCGA	1 cut(s)	770
BspACI	CCGC	4 cut(s)	411, 456, 669, 746
BspCNI	CTCAG	1 cut(s)	518
BspEI	TCCGGA	1 cut(s)	739
BspFNI	CGCG	1 cut(s)	770
BspLI	GGNNCC	3 cut(s)	6, 161, 744
BspMI	ACCTGC	2 cut(s)	166, 403
BspPI	GGATC	4 cut(s)	194, 372, 391, 472
BspQI	GCTCTTC	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	8 cut(s)	112, 186, 216, 317, 364, 383, 464, 580
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	2 cut(s)	609, 677
Bst6I	CTCTTC	2 cut(s)	77, 476
BstDEI	CTNAG	3 cut(s)	505, 758, 785
BstF5I	GGATG	2 cut(s)	37, 301
BstFNI	CGCG	1 cut(s)	770
BstKTI	GATC	8 cut(s)	115, 189, 219, 320, 367, 386, 467, 583
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	8 cut(s)	112, 186, 216, 317, 364, 383, 464, 580
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 410, 712, 754
BstNI	CCWGG	1 cut(s)	587
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	585
BstSFI	CTRYAG	2 cut(s)	108, 168
BstSLI	GKGCMC	1 cut(s)	309
BstUI	CGCG	1 cut(s)	770
BstV1I	GCAGC	2 cut(s)	62, 715
BstV2I	GAAGAC	1 cut(s)	653
BstX2I	RGATCY	3 cut(s)	186, 383, 464
BstYI	RGATCY	3 cut(s)	186, 383, 464
BtsCI	GGATG	2 cut(s)	37, 301
BtsIMutI	CAGTG	1 cut(s)	605
BtuMI	TCGCGA	1 cut(s)	770
BveI	ACCTGC	2 cut(s)	166, 403
Cfr13I	GGNCC	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	90, 208
CviAII	CATG	8 cut(s)	70, 302, 310, 359, 475, 562, 620, 643
CviQI	GTAC	2 cut(s)	90, 208
DdeI	CTNAG	3 cut(s)	505, 758, 785
DpnI	GATC	8 cut(s)	114, 188, 218, 319, 366, 385, 466, 582
DpnII	GATC	8 cut(s)	112, 186, 216, 317, 364, 383, 464, 580
Eam1104I	CTCTTC	2 cut(s)	77, 476
EarI	CTCTTC	2 cut(s)	77, 476
Eco24I	GRGCYC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	159
Eco88I	CYCGRG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	262
FaeI	CATG	8 cut(s)	73, 305, 313, 362, 478, 565, 623, 646
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	8 cut(s)	69, 301, 309, 358, 474, 561, 619, 642
Fnu4HI	GCNGC	3 cut(s)	51, 704, 746
FokI	GGATG	2 cut(s)	44, 308
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	3 cut(s)	51, 704, 746
FspBI	CTAG	3 cut(s)	93, 489, 522
GluI	GCNGC	3 cut(s)	51, 704, 746
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	179, 531
HapII	CCGG	1 cut(s)	740
Hin1II	CATG	8 cut(s)	73, 305, 313, 362, 478, 565, 623, 646
HinfI	GANTC	3 cut(s)	100, 123, 751
HpaII	CCGG	1 cut(s)	740
HphI	GGTGA	3 cut(s)	344, 575, 635
Hpy166II	GTNNAC	2 cut(s)	250, 288
Hpy188I	TCNGA	2 cut(s)	183, 295
Hpy188III	TCNNGA	5 cut(s)	226, 247, 263, 740, 769
Hpy8I	GTNNAC	2 cut(s)	250, 288
HpyCH4III	ACNGT	2 cut(s)	609, 677
HpyCH4V	TGCA	3 cut(s)	313, 392, 619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 410, 712, 754
HpyF3I	CTNAG	3 cut(s)	505, 758, 785
Hsp92II	CATG	8 cut(s)	73, 305, 313, 362, 478, 565, 623, 646
Kpn2I	TCCGGA	1 cut(s)	739
Kzo9I	GATC	8 cut(s)	112, 186, 216, 317, 364, 383, 464, 580
LguI	GCTCTTC	1 cut(s)	77
LmnI	GCTCC	2 cut(s)	133, 742
Lsp1109I	GCAGC	2 cut(s)	62, 715
MaeI	CTAG	3 cut(s)	93, 489, 522
MaeIII	GTNAC	2 cut(s)	343, 671
MalI	GATC	8 cut(s)	114, 188, 218, 319, 366, 385, 466, 582
MboI	GATC	8 cut(s)	112, 186, 216, 317, 364, 383, 464, 580
MboII	GAAGA	9 cut(s)	94, 286, 289, 292, 378, 399, 493, 590, 658
MflI	RGATCY	3 cut(s)	186, 383, 464
MhlI	GDGCHC	2 cut(s)	262, 309
MluCI	AATT	1 cut(s)	789
MlyI	GAGTC	1 cut(s)	745
MroI	TCCGGA	1 cut(s)	739
MroXI	GAANNNNTTC	1 cut(s)	523
MseI	TTAA	2 cut(s)	375, 432
MspA1I	CMGCKG	4 cut(s)	199, 413, 509, 748
MspI	CCGG	1 cut(s)	740
MspR9I	CCNGG	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	587
MvnI	CGCG	1 cut(s)	770
MwoI	GCNNNNNNNGC	4 cut(s)	84, 410, 712, 754
NdeII	GATC	8 cut(s)	112, 186, 216, 317, 364, 383, 464, 580
NlaIII	CATG	8 cut(s)	73, 305, 313, 362, 478, 565, 623, 646
NlaIV	GGNNCC	3 cut(s)	6, 161, 744
NmeAIII	GCCGAG	2 cut(s)	79, 733
NmuCI	GTSAC	1 cut(s)	671
NruI	TCGCGA	1 cut(s)	770
NspI	RCATGY	1 cut(s)	73
PaqCI	CACCTGC	1 cut(s)	403
PciSI	GCTCTTC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	523
PfeI	GAWTC	2 cut(s)	100, 123
PkrI	GCNGC	3 cut(s)	52, 705, 747
PleI	GAGTC	1 cut(s)	745
PpsI	GAGTC	1 cut(s)	745
PpuMI	RGGWCCY	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	585
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	3 cut(s)	6, 161, 744
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
PsrI	GAACNNNNNNTAC	2 cut(s)	511, 543
PsuI	RGATCY	3 cut(s)	186, 383, 464
PvuII	CAGCTG	2 cut(s)	199, 509
RruI	TCGCGA	1 cut(s)	770
RsaI	GTAC	2 cut(s)	91, 209
RsaNI	GTAC	2 cut(s)	90, 208
SapI	GCTCTTC	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	375, 432
SatI	GCNGC	3 cut(s)	51, 704, 746
Sau3AI	GATC	8 cut(s)	112, 186, 216, 317, 364, 383, 464, 580
Sau96I	GGNCC	1 cut(s)	159
ScaI	AGTACT	1 cut(s)	91
SchI	GAGTC	1 cut(s)	745
ScrFI	CCNGG	1 cut(s)	587
SduI	GDGCHC	2 cut(s)	262, 309
SfcI	CTRYAG	2 cut(s)	108, 168
SinI	GGWCC	1 cut(s)	159
SmlI	CTYRAG	2 cut(s)	128, 698
SmoI	CTYRAG	2 cut(s)	128, 698
SpeI	ACTAGT	1 cut(s)	521
Sse9I	AATT	1 cut(s)	789
SsiI	CCGC	4 cut(s)	411, 456, 669, 746
SspMI	CTAG	3 cut(s)	93, 489, 522
StyD4I	CCNGG	1 cut(s)	585
TaaI	ACNGT	2 cut(s)	609, 677
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	789
TatI	WGTACW	1 cut(s)	89
TauI	GCSGC	1 cut(s)	748
TfiI	GAWTC	2 cut(s)	100, 123
Tru1I	TTAA	2 cut(s)	375, 432
Tru9I	TTAA	2 cut(s)	375, 432
TscAI	CASTG	1 cut(s)	612
TseFI	GTSAC	1 cut(s)	671
TseI	GCWGC	2 cut(s)	50, 703
Tsp45I	GTSAC	1 cut(s)	671
TspDTI	ATGAA	5 cut(s)	290, 485, 550, 557, 659
TspRI	CASTG	1 cut(s)	612
VpaK11BI	GGWCC	1 cut(s)	159
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	523
XspI	CTAG	3 cut(s)	93, 489, 522
ZrmI	AGTACT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.