Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003797

Physical Location & Seq

Genomic Coordinates Forward (+)

11783117 .. 11784384

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0135900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTCGATTGATGGTGTATCACGTAGAGCATGTGAAGGTATAGTCTGGTATAGGTTGAATATAAATGAAGGAACAGCAAGAATCTCATATGAGGAGCCGCAAGGAGGGGATTGGGAGAATTTAGAGAGAGTAAGAAACTCCAAGTTCATTCTCTATGAAGGAAGTGATAGCAGAGCCGAAATTTTTTTCTCCTGTACTCGTAAAGTGACCAATGTGTACATCCAGAAACCTATCTTGTTCACATTCAATAAGAAGATGAAGACTTGGATCCTTTTTTACCCTATATTCGAAGATTTTCATGATTGGTGGCGTTGCAAGTTTCGTGAAGTGAAGAATTCTGTTTCGGAAAAGGAGAAGTTATACGTTTGGTTGAGGAAAAATGCTAGGAAAATTTTGAAGGCCTTTATTGATGCTCACACTGAGGGCATTGCCCACGGTGATTTGAGCAATTTGTCCAACTATGTGATTGTACGGGACACCACTGATGAAAAGCTGAAGCTTCAGAACTTCAGCATTCAGCGAGAGCGCTTGGGAGAGGAAGATTGGAAGGCATTTGAGATAACTGATGTCACAAATTTTTTCACACAGCTGAAGTCAATAATGCCTTATTACCGCAAGCATGACTGTGAATGCATTTTTGATATTTTGAATGATTCGAACAGGTTGAGTAACATGAGTTTCACGGAGCTATGCAAGAGGCTCCTTGGACATCCTTATCTAAAGAGTGGCCGTAAGCGGTTAAAGATATTCGTTGACGCCGCTAGAGTGTTTGACTTGAACTCGTATCATCCTGAACTCCAAGACATTAGTCAAGACGCAGAGAAGAAAAATGTTATTAGAATGCCATGGAATTCAGGATTGATGAGAGATGAAGAGGTGAGTGATTCTGACGTTGAGAAGGGAATGAAAAAGACTTATCGGATTAATTACGAAGGAGTTCAAATTACAGGGGTTGAGTATTGGGAGTTAATCCAATTTTTGAGACACGTATACTTTCACGCCATTAAGAACGGGATATTTGATGCGTATGATGGCTATGTGACTAGGAGATACCCTGGGTTGGTAAGTCTTATTTATCTGCATTGTCCACCAGCTGTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010586 GO:0010587 GO:0016070 GO:0016592 GO:0016787 GO:0016788 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T RRM_1

Protein Analysis

367

Amino Acids

43.48

Weight (kDa)

8.49

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50090 AT3G50100 AT3G50100 AT5G67240 AT5G67240 AT5G67240 AT5G67240
fragaria_vesca	FvH4_1g16590 FvH4_1g16590 FvH4_4g28290
malus_domestica	MD02G1178000.v1.1 MD15G1287900.v1.1
prunus_persica	Prupe.6G230000_v2.0.a1
pyrus_communis	pycom02g14410 pycom15g25140
rosa_chinensis	RchiOBHm_Chr2g0106501
rosa_laevigata	RLG00000017507
rosa_roxburghii	Rroxscaffold_2G00137120 Rroxscaffold_3G00227560
rosa_rugosa	Rorug02G0135700 Rorug02G0135800 Rorug02G0135900 Rorug02G0136000 Rorug05G0123100 Rorug05G0252900 Rorug05G0347700
rosa_samantha	Rh2AG187300 Rh2BG198100 Rh2BG614000 Rh2CG192300 Rh2DG193400 Rh5BG226200
rosa_wichuraiana	Rw2G014600 Rw2G014620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	990
AciI	CCGC	4 cut(s)	98, 613, 736, 759
AclWI	GGATC	2 cut(s)	262, 275
AcoI	YGGCCR	1 cut(s)	727
AcsI	RAATTY	6 cut(s)	118, 180, 334, 390, 574, 850
AcuI	CTGAAG	4 cut(s)	485, 493, 515, 611
AcyI	GRCGYC	1 cut(s)	756
AfaI	GTAC	3 cut(s)	196, 218, 471
AfeI	AGCGCT	1 cut(s)	527
AfiI	CCNNNNNNNGG	2 cut(s)	104, 1060
AflIII	ACRYGT	1 cut(s)	985
AgsI	TTSAA	6 cut(s)	58, 247, 397, 649, 778, 941
AjnI	CCWGG	1 cut(s)	1054
AluBI	AGCT	5 cut(s)	493, 499, 589, 688, 1094
AluI	AGCT	5 cut(s)	493, 499, 589, 688, 1094
Alw26I	GTCTC	1 cut(s)	976
AlwI	GGATC	2 cut(s)	262, 275
Aor51HI	AGCGCT	1 cut(s)	527
AoxI	GGCC	2 cut(s)	399, 727
ApoI	RAATTY	6 cut(s)	118, 180, 334, 390, 574, 850
AseI	ATTAAT	1 cut(s)	924
Asp700I	GAANNNNTTC	2 cut(s)	294, 936
AspLEI	GCGC	1 cut(s)	528
AsuHPI	GGTGA	2 cut(s)	449, 889
AsuII	TTCGAA	2 cut(s)	288, 656
BamHI	GGATCC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	266
BccI	CCATC	2 cut(s)	5, 1025
BceAI	ACGGC	1 cut(s)	714
BciT130I	CCWGG	1 cut(s)	1056
BcoDI	GTCTC	1 cut(s)	976
BfaI	CTAG	3 cut(s)	384, 762, 1044
BfoI	RGCGCY	1 cut(s)	529
BisI	GCNGC	2 cut(s)	98, 759
BlsI	GCNGC	2 cut(s)	99, 760
Bme1390I	CCNGG	1 cut(s)	1056
BmiI	GGNNCC	3 cut(s)	96, 269, 701
BmrFI	CCNGG	1 cut(s)	1056
BmsI	GCATC	2 cut(s)	400, 1012
BoxI	GACNNNNGTC	1 cut(s)	807
BpiI	GAAGAC	1 cut(s)	266
Bpu14I	TTCGAA	2 cut(s)	288, 656
BsaAI	YACGTR	2 cut(s)	23, 988
BsaHI	GRCGYC	1 cut(s)	756
BsaJI	CCNNGG	5 cut(s)	433, 703, 845, 1054, 1055
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 1060
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	1056
BseDI	CCNNGG	5 cut(s)	433, 703, 845, 1054, 1055
BseGI	GGATG	3 cut(s)	219, 709, 787
BseLI	CCNNNNNNNGG	2 cut(s)	104, 1060
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	401, 729
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	2 cut(s)	104, 1060
BsmAI	GTCTC	1 cut(s)	976
BsmFI	GGGAC	1 cut(s)	488
BsmI	GAATGC	3 cut(s)	513, 635, 846
BsnI	GGCC	2 cut(s)	401, 729
Bsp119I	TTCGAA	2 cut(s)	288, 656
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	267
Bsp19I	CCATGG	1 cut(s)	845
BspACI	CCGC	4 cut(s)	98, 613, 736, 759
BspANI	GGCC	2 cut(s)	401, 729
BspCNI	CTCAG	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	3 cut(s)	96, 269, 701
BspPI	GGATC	2 cut(s)	262, 275
BspT104I	TTCGAA	2 cut(s)	288, 656
BsrDI	GCAATG	1 cut(s)	426
BsrGI	TGTACA	1 cut(s)	216
BssECI	CCNNGG	5 cut(s)	433, 703, 845, 1054, 1055
BssMI	GATC	1 cut(s)	267
BssNAI	GTATAC	1 cut(s)	991
BssNI	GRCGYC	1 cut(s)	756
BssT1I	CCWWGG	2 cut(s)	703, 845
Bst1107I	GTATAC	1 cut(s)	991
Bst2UI	CCWGG	1 cut(s)	1056
Bst4CI	ACNGT	2 cut(s)	437, 626
Bst6I	CTCTTC	1 cut(s)	867
BstACI	GRCGYC	1 cut(s)	756
BstAUI	TGTACA	1 cut(s)	216
BstBAI	YACGTR	2 cut(s)	23, 988
BstBI	TTCGAA	2 cut(s)	288, 656
BstC8I	GCNNGC	1 cut(s)	617
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	2 cut(s)	433, 845
BstF5I	GGATG	3 cut(s)	219, 709, 787
BstH2I	RGCGCY	1 cut(s)	529
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	1 cut(s)	976
BstMBI	GATC	1 cut(s)	267
BstNI	CCWGG	1 cut(s)	1056
BstNSI	RCATGY	1 cut(s)	33
BstPAI	GACNNNNGTC	1 cut(s)	807
BstSCI	CCNGG	1 cut(s)	1054
BstV2I	GAAGAC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BstZ17I	GTATAC	1 cut(s)	991
BsuRI	GGCC	2 cut(s)	401, 729
BtgI	CCRYGG	2 cut(s)	433, 845
BtsCI	GGATG	3 cut(s)	219, 709, 787
BtsIMutI	CAGTG	2 cut(s)	417, 480
Cac8I	GCNNGC	1 cut(s)	617
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	1 cut(s)	528
CseI	GACGC	2 cut(s)	764, 824
Csp6I	GTAC	3 cut(s)	195, 217, 470
CviAII	CATG	5 cut(s)	30, 299, 620, 673, 846
CviQI	GTAC	3 cut(s)	195, 217, 470
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
EaeI	YGGCCR	1 cut(s)	727
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
Eco130I	CCWWGG	2 cut(s)	703, 845
Eco147I	AGGCCT	1 cut(s)	401
Eco47III	AGCGCT	1 cut(s)	527
Eco57I	CTGAAG	4 cut(s)	485, 493, 515, 611
EcoRI	GAATTC	2 cut(s)	334, 850
EcoRII	CCWGG	1 cut(s)	1054
EcoT14I	CCWWGG	2 cut(s)	703, 845
EcoT22I	ATGCAT	1 cut(s)	635
ErhI	CCWWGG	2 cut(s)	703, 845
FaeI	CATG	5 cut(s)	33, 302, 623, 676, 849
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	5 cut(s)	29, 298, 619, 672, 845
FauNDI	CATATG	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	990
Fnu4HI	GCNGC	2 cut(s)	98, 759
FokI	GGATG	3 cut(s)	206, 696, 774
Fsp4HI	GCNGC	2 cut(s)	98, 759
FspBI	CTAG	3 cut(s)	384, 762, 1044
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	2 cut(s)	98, 759
HaeII	RGCGCY	1 cut(s)	529
HaeIII	GGCC	2 cut(s)	401, 729
HgaI	GACGC	2 cut(s)	764, 824
HhaI	GCGC	1 cut(s)	528
Hin1I	GRCGYC	1 cut(s)	756
Hin1II	CATG	5 cut(s)	33, 302, 623, 676, 849
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	3 cut(s)	81, 653, 884
HphI	GGTGA	2 cut(s)	449, 889
Hpy166II	GTNNAC	5 cut(s)	217, 240, 754, 991, 1088
Hpy188I	TCNGA	4 cut(s)	346, 504, 889, 921
Hpy188III	TCNNGA	6 cut(s)	223, 299, 323, 791, 812, 855
Hpy8I	GTNNAC	5 cut(s)	217, 240, 754, 991, 1088
HpyAV	CCTTC	7 cut(s)	29, 62, 152, 391, 541, 892, 926
HpyCH4III	ACNGT	2 cut(s)	437, 626
HpyCH4IV	ACGT	4 cut(s)	22, 363, 891, 987
HpyCH4V	TGCA	5 cut(s)	315, 633, 693, 1081, 1100
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	4 cut(s)	22, 363, 891, 987
Hsp92I	GRCGYC	1 cut(s)	756
Hsp92II	CATG	5 cut(s)	33, 302, 623, 676, 849
HspAI	GCGC	1 cut(s)	526
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	3 cut(s)	94, 685, 705
LpnPI	CCDG	9 cut(s)	31, 205, 236, 646, 804, 840, 933, 1041, 1068
LweI	GCATC	2 cut(s)	400, 1012
MaeI	CTAG	3 cut(s)	384, 762, 1044
MaeII	ACGT	4 cut(s)	22, 363, 891, 987
MaeIII	GTNAC	4 cut(s)	205, 568, 668, 1039
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	7 cut(s)	265, 271, 302, 343, 551, 835, 884
MflI	RGATCY	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	7 cut(s)	85, 98, 366, 415, 529, 690, 868
Mph1103I	ATGCAT	1 cut(s)	635
MroXI	GAANNNNTTC	2 cut(s)	294, 936
MseI	TTAA	4 cut(s)	740, 924, 968, 1005
MslI	CAYNNNNRTG	1 cut(s)	624
MspA1I	CMGCKG	2 cut(s)	589, 1094
MspR9I	CCNGG	1 cut(s)	1056
Mva1269I	GAATGC	3 cut(s)	513, 635, 846
MvaI	CCWGG	1 cut(s)	1056
NcoI	CCATGG	1 cut(s)	845
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	5 cut(s)	33, 302, 623, 676, 849
NlaIV	GGNNCC	3 cut(s)	96, 269, 701
NmuCI	GTSAC	3 cut(s)	205, 568, 1039
NsiI	ATGCAT	1 cut(s)	635
NspI	RCATGY	1 cut(s)	33
NspV	TTCGAA	2 cut(s)	288, 656
PagI	TCATGA	1 cut(s)	298
PasI	CCCWGGG	1 cut(s)	1055
PceI	AGGCCT	1 cut(s)	401
PctI	GAATGC	3 cut(s)	513, 635, 846
PdmI	GAANNNNTTC	2 cut(s)	294, 936
PfeI	GAWTC	3 cut(s)	81, 653, 884
PkrI	GCNGC	2 cut(s)	99, 760
Ppu21I	YACGTR	2 cut(s)	23, 988
PshAI	GACNNNNGTC	1 cut(s)	807
PshBI	ATTAAT	1 cut(s)	924
Psp6I	CCWGG	1 cut(s)	1054
PspGI	CCWGG	1 cut(s)	1054
PspN4I	GGNNCC	3 cut(s)	96, 269, 701
PsuI	RGATCY	1 cut(s)	267
PvuII	CAGCTG	2 cut(s)	589, 1094
RsaI	GTAC	3 cut(s)	196, 218, 471
RsaNI	GTAC	3 cut(s)	195, 217, 470
RseI	CAYNNNNRTG	1 cut(s)	624
SaqAI	TTAA	4 cut(s)	740, 924, 968, 1005
SatI	GCNGC	2 cut(s)	98, 759
Sau3AI	GATC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	1056
SfaNI	GCATC	2 cut(s)	400, 1012
SfuI	TTCGAA	2 cut(s)	288, 656
SmiMI	CAYNNNNRTG	1 cut(s)	624
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	4 cut(s)	98, 613, 736, 759
SspMI	CTAG	3 cut(s)	384, 762, 1044
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	1054
StyI	CCWWGG	2 cut(s)	703, 845
TaaI	ACNGT	2 cut(s)	437, 626
TaiI	ACGT	4 cut(s)	25, 366, 894, 990
TaqI	TCGA	3 cut(s)	5, 288, 656
TatI	WGTACW	2 cut(s)	194, 216
TauI	GCSGC	2 cut(s)	100, 761
TfiI	GAWTC	3 cut(s)	81, 653, 884
Tru1I	TTAA	4 cut(s)	740, 924, 968, 1005
Tru9I	TTAA	4 cut(s)	740, 924, 968, 1005
TscAI	CASTG	2 cut(s)	424, 487
TseFI	GTSAC	3 cut(s)	205, 568, 1039
Tsp45I	GTSAC	3 cut(s)	205, 568, 1039
TspDTI	ATGAA	8 cut(s)	81, 136, 171, 272, 287, 501, 885, 920
TspGWI	ACGGA	1 cut(s)	698
TspRI	CASTG	2 cut(s)	424, 487
VspI	ATTAAT	1 cut(s)	924
XapI	RAATTY	6 cut(s)	118, 180, 334, 390, 574, 850
XceI	RCATGY	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	990
XmnI	GAANNNNTTC	2 cut(s)	294, 936
XspI	CTAG	3 cut(s)	384, 762, 1044
Zsp2I	ATGCAT	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.