Rw2G014600

Small RNA degrading nuclease

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
16432737 .. 16436014
3278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G014600.1

Sequence Viewer

Length: 1572 bp
ATGGATGATTTCATCGCCACCGCAGAGAAAAAGGTGCTTGTGGAGATTGTGAAGTTGGCCCAGAAGCGAGGAATGAAGGGTTCTAAAGGAGACTGGAAGCAGTTTCTAGCTAGTTATGATAAAAAATTTGGGGCTAGTTTGAGTGATCCTGGAAAGAGGTCAATCGATGTGTTGACTGCGTTTGTCAGGAGTTTTGATAAACATGATGATTTGAAGCTTTTCGCCAAAGTTGTACAATGCAATTCGAATCGCCAAGGAGTAGACCAGTTCTTGAAGAACTCTCCGGCAAATGAATCCAAGGAGCAGAAGCTGGTCCGTGTAACTCTTGAACACCCACAATACCCAATTGACTATTCGTTCCCGTCACATAACCAGGACTGGGTAATTACAAAGCTCAATAAAAAGTCGAAGCAGATGTCAAATGCAATGCTTGCTGTTGATTGTGAGATGGTTCTATGTAAAGATGGATCTGAAGCTTTAGTAAGGGTGTGCGTTGTGGATCAAAACTTAGAGGTCAAACTGGATGAACTAGTAAACCCCAACAAAGAAGTTGCTGATTACAGAACTGTGATTACAGGAATGTCTGCAGCAGATTTGGCTGGTGTTACATGTACTTTAGCTGATATACAGAAATCCTTCAAGAAGTTGTTGTCAGATGGAACAATTTTAGTTGGACACAGTTTGAATAATGACCTGCAGGCATTGAAGATAGACCATATAATGGTGATTGATACCGCATATGTATTTAGATATTCGGATGGGCCTATTTCTAGAAAACCTTCCTTGAATAATCTGTGCAAGTCTGTGTTAGGCTATGAAGTTAGAAAGAAAGGTTCTCCACACAATTGTCTAGATGATGCCTGTGCTGCAATGAAACTTGTTCTTGCTAAGGTAGAGCGTGAAGTTGGTGATACCATTCCATCAGTTCAGGAGGATGTACCTGATACTAATATGGCCAAGCTACTCCTTCACAGGATACCAAGAACAGTGCCTAGTGTAGAATTGCAGAATGCCATACCTGGGAACTTCACATTAGAAGTCAAGAAGCCATCGGTTAAAGCCAAAGGAGGTATATATTCTGCCTTCGCTATATTTAAGAATCAACAAGAAGCGCATCAAGCATATGAAAAAGTCCAAGGCAGCCAGGAAGAGGACTCGTCTGGACGGCCACAAAAACTTGCTGAATTTAAGCTCAGCACAGGGGTAGTTACTAATCTATATGTTCGTAAAATGGTAGATAATGGTTCCTCAGACCAAACCTCTTCAAAGAGAGCTCTTGAAGTTGAGGAGAGCACAGGTGCAAATAAGAAACAAAAGATGGGTGAGAAAATAGAAGATGAGACAATGGCTGACTTAGATCATTGTTGCGATCATCTCAAAGAGATAGAAAGATTGAAGCAAGAACAAGAAAAGCTATTGAAACAGTGTTCAGATCAGTTAAAAGATATTGAAGGATTGAAGCAAGAAATTAAAAATAGGGAATATGAAATCTCTATGCTGAAGAAGAGCCAAGTTCCAGAAGGACAAGAAAAAAGGCTGTATAAAAAAAAGGACAAGAAAAAACGGAAATAG

Protein Analysis

523

Amino Acids

58.77

Weight (kDa)

8.75

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 702
AccB7I CCANNNNNTGG 1 cut(s) 721
AccI GTMKAC 1 cut(s) 261
AciI CCGC 2 cut(s) 21, 735
AclWI GGATC 3 cut(s) 140, 475, 507
AcoI YGGCCR 2 cut(s) 954, 1166
AcsI RAATTY 2 cut(s) 125, 1184
AcuI CTGAAG 2 cut(s) 492, 1520
AfaI GTAC 3 cut(s) 234, 613, 939
AfiI CCNNNNNNNGG 4 cut(s) 379, 721, 1020, 1150
AflIII ACRYGT 1 cut(s) 608
AhlI ACTAGT 1 cut(s) 529
AjnI CCWGG 4 cut(s) 148, 372, 1018, 1143
AjuI GAANNNNNNNTTGG 2 cut(s) 337, 369
Alw21I GWGCWC 2 cut(s) 1276, 1295
Alw26I GTCTC 2 cut(s) 84, 1334
AlwI GGATC 3 cut(s) 140, 475, 507
AlwNI CAGNNNCTG 1 cut(s) 310
AoxI GGCC 4 cut(s) 57, 761, 954, 1166
ApeKI GCWGC 3 cut(s) 587, 866, 1140
ApoI RAATTY 2 cut(s) 125, 1184
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
Asp700I GAANNNNTTC 3 cut(s) 218, 635, 778
AspLEI GCGC 1 cut(s) 1114
AspS9I GGNCC 3 cut(s) 58, 313, 761
AsuHPI GGTGA 3 cut(s) 736, 920, 1334
AsuII TTCGAA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 313
BalI TGGCCA 1 cut(s) 956
BanII GRGCYC 1 cut(s) 1276
Bbv12I GWGCWC 2 cut(s) 1276, 1295
BbvI GCAGC 3 cut(s) 599, 853, 1152
BccI CCATC 7 cut(s) 442, 458, 650, 752, 928, 1057, 1312
BceAI ACGGC 1 cut(s) 1181
BciT130I CCWGG 4 cut(s) 150, 374, 1020, 1145
BciVI GTATCC 1 cut(s) 969
BcoDI GTCTC 2 cut(s) 84, 1334
BcuI ACTAGT 1 cut(s) 529
BfaI CTAG 7 cut(s) 107, 111, 135, 530, 771, 851, 993
BfmI CTRYAG 2 cut(s) 585, 695
BfuAI ACCTGC 1 cut(s) 702
BfuI GTATCC 1 cut(s) 969
BisI GCNGC 3 cut(s) 588, 867, 1141
BlpI GCTNAGC 1 cut(s) 1193
BlsI GCNGC 3 cut(s) 589, 868, 1142
Bme1390I CCNGG 4 cut(s) 150, 374, 1020, 1145
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 3 cut(s) 58, 313, 761
BmiI GGNNCC 1 cut(s) 1246
BmrFI CCNGG 4 cut(s) 150, 374, 1020, 1145
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 2 cut(s) 847, 1123
BmuI ACTGGG 1 cut(s) 388
Bpu10I CCTNAGC 1 cut(s) 888
Bpu1102I GCTNAGC 1 cut(s) 1193
Bpu14I TTCGAA 1 cut(s) 245
Bsa29I ATCGAT 1 cut(s) 165
BsaJI CCNNGG 4 cut(s) 253, 297, 1019, 1135
Bsc4I CCNNNNNNNGG 4 cut(s) 379, 721, 1020, 1150
Bse1I ACTGG 4 cut(s) 98, 265, 383, 525
Bse3DI GCAATG 2 cut(s) 432, 876
BseBI CCWGG 4 cut(s) 150, 374, 1020, 1145
BseCI ATCGAT 1 cut(s) 165
BseDI CCNNGG 4 cut(s) 253, 297, 1019, 1135
BseGI GGATG 4 cut(s) 10, 529, 763, 940
BseLI CCNNNNNNNGG 4 cut(s) 379, 721, 1020, 1150
BseMI GCAATG 2 cut(s) 432, 876
BseMII CTCAG 2 cut(s) 1207, 1263
BseNI ACTGG 4 cut(s) 98, 265, 383, 525
BseRI GAGGAG 1 cut(s) 1301
BseXI GCAGC 3 cut(s) 599, 853, 1152
BshFI GGCC 4 cut(s) 59, 763, 956, 1168
BshVI ATCGAT 1 cut(s) 165
BsiHKAI GWGCWC 2 cut(s) 1276, 1295
BsiSI CCGG 1 cut(s) 284
BslI CCNNNNNNNGG 4 cut(s) 379, 721, 1020, 1150
BsmAI GTCTC 2 cut(s) 84, 1334
BsmI GAATGC 1 cut(s) 1015
BsnI GGCC 4 cut(s) 59, 763, 956, 1168
Bsp119I TTCGAA 1 cut(s) 245
Bsp1286I GDGCHC 2 cut(s) 1276, 1295
Bsp1407I TGTACA 1 cut(s) 232
Bsp143I GATC 6 cut(s) 145, 467, 499, 1357, 1369, 1432
Bsp1720I GCTNAGC 1 cut(s) 1193
BspACI CCGC 2 cut(s) 21, 735
BspANI GGCC 4 cut(s) 59, 763, 956, 1168
BspCNI CTCAG 2 cut(s) 1206, 1262
BspDI ATCGAT 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 1246
BspMAI CTGCAG 2 cut(s) 589, 699
BspMI ACCTGC 1 cut(s) 702
BspPI GGATC 3 cut(s) 140, 475, 507
BspQI GCTCTTC 1 cut(s) 1499
BspT104I TTCGAA 1 cut(s) 245
BsrDI GCAATG 2 cut(s) 432, 876
BsrGI TGTACA 1 cut(s) 232
BsrI ACTGG 4 cut(s) 98, 265, 383, 525
BssECI CCNNGG 4 cut(s) 253, 297, 1019, 1135
BssMI GATC 6 cut(s) 145, 467, 499, 1357, 1369, 1432
BssT1I CCWWGG 3 cut(s) 253, 297, 1135
Bst2UI CCWGG 4 cut(s) 150, 374, 1020, 1145
Bst4CI ACNGT 4 cut(s) 568, 680, 988, 1425
Bst6I CTCTTC 3 cut(s) 1143, 1267, 1499
BstAPI GCANNNNNTGC 1 cut(s) 431
BstAUI TGTACA 1 cut(s) 232
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 2 cut(s) 432, 699
BstDEI CTNAG 5 cut(s) 508, 888, 1193, 1249, 1354
BstF5I GGATG 4 cut(s) 10, 529, 763, 940
BstHHI GCGC 1 cut(s) 1114
BstKTI GATC 6 cut(s) 148, 470, 502, 1360, 1372, 1435
BstMAI GTCTC 2 cut(s) 84, 1334
BstMBI GATC 6 cut(s) 145, 467, 499, 1357, 1369, 1432
BstMWI GCNNNNNNNGC 4 cut(s) 431, 596, 866, 1118
BstNI CCWGG 4 cut(s) 150, 374, 1020, 1145
BstNSI RCATGY 1 cut(s) 612
BstSCI CCNGG 4 cut(s) 148, 372, 1018, 1143
BstSFI CTRYAG 2 cut(s) 585, 695
BstV1I GCAGC 3 cut(s) 599, 853, 1152
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
Bsu15I ATCGAT 1 cut(s) 165
BsuI GTATCC 1 cut(s) 969
BsuRI GGCC 4 cut(s) 59, 763, 956, 1168
BsuTUI ATCGAT 1 cut(s) 165
BtsCI GGATG 4 cut(s) 10, 529, 763, 940
BtsIMutI CAGTG 2 cut(s) 993, 1430
BveI ACCTGC 1 cut(s) 702
Cac8I GCNNGC 2 cut(s) 432, 699
CaiI CAGNNNCTG 1 cut(s) 310
CfoI GCGC 1 cut(s) 1114
Cfr13I GGNCC 3 cut(s) 58, 313, 761
ClaI ATCGAT 1 cut(s) 165
Csp6I GTAC 3 cut(s) 233, 612, 938
CviAII CATG 2 cut(s) 203, 609
CviQI GTAC 3 cut(s) 233, 612, 938
DdeI CTNAG 5 cut(s) 508, 888, 1193, 1249, 1354
DpnI GATC 6 cut(s) 147, 469, 501, 1359, 1371, 1434
DpnII GATC 6 cut(s) 145, 467, 499, 1357, 1369, 1432
EaeI YGGCCR 2 cut(s) 954, 1166
Eam1104I CTCTTC 3 cut(s) 1143, 1267, 1499
EarI CTCTTC 3 cut(s) 1143, 1267, 1499
Ecl136II GAGCTC 1 cut(s) 1274
Eco130I CCWWGG 3 cut(s) 253, 297, 1135
Eco24I GRGCYC 1 cut(s) 1276
Eco47I GGWCC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 1274
Eco57I CTGAAG 2 cut(s) 492, 1520
EcoICRI GAGCTC 1 cut(s) 1274
EcoRII CCWGG 4 cut(s) 148, 372, 1018, 1143
EcoT14I CCWWGG 3 cut(s) 253, 297, 1135
EcoT38I GRGCYC 1 cut(s) 1276
ErhI CCWWGG 3 cut(s) 253, 297, 1135
FaeI CATG 2 cut(s) 206, 612
FatI CATG 2 cut(s) 202, 608
FauNDI CATATG 2 cut(s) 739, 1123
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 3 cut(s) 588, 867, 1141
FokI GGATG 4 cut(s) 17, 536, 770, 947
FriOI GRGCYC 1 cut(s) 1276
Fsp4HI GCNGC 3 cut(s) 588, 867, 1141
FspBI CTAG 7 cut(s) 107, 111, 135, 530, 771, 851, 993
GlaI GCGC 1 cut(s) 1113
GluI GCNGC 3 cut(s) 588, 867, 1141
HaeIII GGCC 4 cut(s) 59, 763, 956, 1168
HapII CCGG 1 cut(s) 284
HhaI GCGC 1 cut(s) 1114
Hin1II CATG 2 cut(s) 206, 612
Hin6I GCGC 1 cut(s) 1112
HinP1I GCGC 1 cut(s) 1112
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HindIII AAGCTT 2 cut(s) 215, 474
HinfI GANTC 4 cut(s) 247, 293, 1099, 1154
HpaII CCGG 1 cut(s) 284
HphI GGTGA 3 cut(s) 736, 920, 1334
Hpy166II GTNNAC 3 cut(s) 174, 262, 535
Hpy188I TCNGA 5 cut(s) 472, 655, 757, 1252, 1432
Hpy8I GTNNAC 3 cut(s) 174, 262, 535
HpyAV CCTTC 7 cut(s) 70, 646, 789, 977, 1093, 1445, 1514
HpyCH4III ACNGT 4 cut(s) 568, 680, 988, 1425
HpyCH4V TGCA 8 cut(s) 240, 425, 587, 697, 798, 869, 1006, 1301
HpyF10VI GCNNNNNNNGC 4 cut(s) 431, 596, 866, 1118
HpyF3I CTNAG 5 cut(s) 508, 888, 1193, 1249, 1354
Hsp92II CATG 2 cut(s) 206, 612
HspAI GCGC 1 cut(s) 1112
Kzo9I GATC 6 cut(s) 145, 467, 499, 1357, 1369, 1432
LguI GCTCTTC 1 cut(s) 1499
LmnI GCTCC 1 cut(s) 301
Lsp1109I GCAGC 3 cut(s) 599, 853, 1152
LweI GCATC 2 cut(s) 847, 1123
MaeI CTAG 7 cut(s) 107, 111, 135, 530, 771, 851, 993
MaeIII GTNAC 4 cut(s) 319, 363, 604, 1207
MalI GATC 6 cut(s) 147, 469, 501, 1359, 1371, 1434
MboI GATC 6 cut(s) 145, 467, 499, 1357, 1369, 1432
MboII GAAGA 7 cut(s) 286, 718, 1160, 1254, 1346, 1513, 1516
MfeI CAATTG 2 cut(s) 345, 844
MflI RGATCY 1 cut(s) 467
MhlI GDGCHC 2 cut(s) 1276, 1295
MlsI TGGCCA 1 cut(s) 956
MluCI AATT 9 cut(s) 125, 241, 345, 384, 663, 844, 1001, 1184, 1467
MluNI TGGCCA 1 cut(s) 956
MlyI GAGTC 1 cut(s) 1148
MmeI TCCRAC 1 cut(s) 652
MnlI CCTC 9 cut(s) 62, 150, 505, 925, 1061, 1144, 1258, 1270, 1279
Mox20I TGGCCA 1 cut(s) 956
MroXI GAANNNNTTC 3 cut(s) 218, 635, 778
MscI TGGCCA 1 cut(s) 956
MseI TTAA 5 cut(s) 1056, 1095, 1188, 1439, 1470
Msp20I TGGCCA 1 cut(s) 956
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 4 cut(s) 150, 374, 1020, 1145
MunI CAATTG 2 cut(s) 345, 844
Mva1269I GAATGC 1 cut(s) 1015
MvaI CCWGG 4 cut(s) 150, 374, 1020, 1145
MwoI GCNNNNNNNGC 4 cut(s) 431, 596, 866, 1118
NdeI CATATG 2 cut(s) 739, 1123
NdeII GATC 6 cut(s) 145, 467, 499, 1357, 1369, 1432
NlaIII CATG 2 cut(s) 206, 612
NlaIV GGNNCC 1 cut(s) 1246
NmuCI GTSAC 1 cut(s) 363
NspI RCATGY 1 cut(s) 612
NspV TTCGAA 1 cut(s) 245
PciI ACATGT 1 cut(s) 608
PciSI GCTCTTC 1 cut(s) 1499
PctI GAATGC 1 cut(s) 1015
PdmI GAANNNNTTC 3 cut(s) 218, 635, 778
PfeI GAWTC 3 cut(s) 247, 293, 1099
PflMI CCANNNNNTGG 1 cut(s) 721
PfoI TCCNGGA 1 cut(s) 148
PkrI GCNGC 3 cut(s) 589, 868, 1142
PleI GAGTC 1 cut(s) 1148
PpsI GAGTC 1 cut(s) 1148
PscI ACATGT 1 cut(s) 608
Psp124BI GAGCTC 1 cut(s) 1276
Psp6I CCWGG 4 cut(s) 148, 372, 1018, 1143
PspGI CCWGG 4 cut(s) 148, 372, 1018, 1143
PspN4I GGNNCC 1 cut(s) 1246
PspPI GGNCC 3 cut(s) 58, 313, 761
PsrI GAACNNNNNNTAC 2 cut(s) 556, 588
PstI CTGCAG 2 cut(s) 589, 699
PstNI CAGNNNCTG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 467
RsaI GTAC 3 cut(s) 234, 613, 939
RsaNI GTAC 3 cut(s) 233, 612, 938
SacI GAGCTC 1 cut(s) 1276
SapI GCTCTTC 1 cut(s) 1499
SaqAI TTAA 5 cut(s) 1056, 1095, 1188, 1439, 1470
SatI GCNGC 3 cut(s) 588, 867, 1141
Sau3AI GATC 6 cut(s) 145, 467, 499, 1357, 1369, 1432
Sau96I GGNCC 3 cut(s) 58, 313, 761
SbfI CCTGCAGG 1 cut(s) 699
SchI GAGTC 1 cut(s) 1148
ScrFI CCNGG 4 cut(s) 150, 374, 1020, 1145
SdaI CCTGCAGG 1 cut(s) 699
SduI GDGCHC 2 cut(s) 1276, 1295
SfaNI GCATC 2 cut(s) 847, 1123
SfcI CTRYAG 2 cut(s) 585, 695
SfuI TTCGAA 1 cut(s) 245
SinI GGWCC 1 cut(s) 313
SpeI ACTAGT 1 cut(s) 529
Sse8387I CCTGCAGG 1 cut(s) 699
Sse9I AATT 9 cut(s) 125, 241, 345, 384, 663, 844, 1001, 1184, 1467
SsiI CCGC 2 cut(s) 21, 735
SspMI CTAG 7 cut(s) 107, 111, 135, 530, 771, 851, 993
SstI GAGCTC 1 cut(s) 1276
StyD4I CCNGG 4 cut(s) 148, 372, 1018, 1143
StyI CCWWGG 3 cut(s) 253, 297, 1135
TaaI ACNGT 4 cut(s) 568, 680, 988, 1425
TaqI TCGA 3 cut(s) 165, 245, 407
TasI AATT 9 cut(s) 125, 241, 345, 384, 663, 844, 1001, 1184, 1467
TatI WGTACW 2 cut(s) 232, 611
TfiI GAWTC 3 cut(s) 247, 293, 1099
Tru1I TTAA 5 cut(s) 1056, 1095, 1188, 1439, 1470
Tru9I TTAA 5 cut(s) 1056, 1095, 1188, 1439, 1470
TscAI CASTG 2 cut(s) 993, 1430
TseFI GTSAC 1 cut(s) 363
TseI GCWGC 3 cut(s) 587, 866, 1140
Tsp45I GTSAC 1 cut(s) 363
TspDTI ATGAA 7 cut(s) 89, 306, 540, 831, 887, 1140, 1500
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 2 cut(s) 993, 1430
Van91I CCANNNNNTGG 1 cut(s) 721
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 2 cut(s) 125, 1184
XbaI TCTAGA 2 cut(s) 770, 850
XceI RCATGY 1 cut(s) 612
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 3 cut(s) 218, 635, 778
XspI CTAG 7 cut(s) 107, 111, 135, 530, 771, 851, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.