Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003797

Physical Location & Seq

Genomic Coordinates Reverse (-)

10872619 .. 10873018

Gene Structure 400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0123100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGAAGATCCTCATATGAAACCACCCAACACTGCCGGAAGCGAAGTTTCTCGGACACCCGAGAATCCTGCAGAGAGCGAAAGCTAGGCTGCCGAAACTGGTTGGATCTCCCGGAGGACATATCGGCGTCAATATTTTCATGCAAGGTTAACCCTCTGGTATGGCAAACCATCGACATGCATCATCTCCCTTCGGATCAGAATATCTACGGCAACATGGAGCATATGTGCCGCGATCTCATTGATCGTAGCTGTGGTAGTTTGGTCGATATCAACGTTGTGCGCTTCGGCACCGACAGGCTTCTTAAGTACATAACTGATAGTAGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010586 GO:0010587 GO:0016070 GO:0016592 GO:0016787 GO:0016788 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T RRM_1

Protein Analysis

110

Amino Acids

12.78

Weight (kDa)

6.88

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50090 AT3G50100 AT3G50100 AT5G67240 AT5G67240 AT5G67240 AT5G67240
fragaria_vesca	FvH4_1g16590 FvH4_1g16590 FvH4_4g28290
malus_domestica	MD02G1178000.v1.1 MD15G1287900.v1.1
prunus_persica	Prupe.6G230000_v2.0.a1
pyrus_communis	pycom02g14410 pycom15g25140
rosa_chinensis	RchiOBHm_Chr2g0106501
rosa_laevigata	RLG00000017507
rosa_roxburghii	Rroxscaffold_2G00137120 Rroxscaffold_3G00227560
rosa_rugosa	Rorug02G0135700 Rorug02G0135800 Rorug02G0135900 Rorug02G0136000 Rorug05G0123100 Rorug05G0252900 Rorug05G0347700
rosa_samantha	Rh2AG187300 Rh2BG198100 Rh2BG614000 Rh2CG192300 Rh2DG193400 Rh5BG226200
rosa_wichuraiana	Rw2G014600 Rw2G014620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AccII	CGCG	1 cut(s)	234
AciI	CCGC	1 cut(s)	232
AclI	AACGTT	1 cut(s)	276
AclWI	GGATC	3 cut(s)	3, 114, 204
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	1 cut(s)	311
AflII	CTTAAG	1 cut(s)	305
AluBI	AGCT	2 cut(s)	85, 252
AluI	AGCT	2 cut(s)	85, 252
AlwI	GGATC	3 cut(s)	3, 114, 204
Ama87I	CYCGRG	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	285
AsuC2I	CCSGG	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BcnI	CCSGG	1 cut(s)	113
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	70
BfrI	CTTAAG	1 cut(s)	305
BisI	GCNGC	2 cut(s)	91, 232
BlsI	GCNGC	2 cut(s)	92, 233
Bme1390I	CCNGG	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bse1I	ACTGG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	234
BshNI	GGYRCC	1 cut(s)	290
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	37, 113
BsoBI	CYCGRG	1 cut(s)	60
Bsp143I	GATC	5 cut(s)	8, 106, 196, 235, 244
BspACI	CCGC	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	329
BspLI	GGNNCC	1 cut(s)	292
BspMAI	CTGCAG	1 cut(s)	74
BspPI	GGATC	3 cut(s)	3, 114, 204
BspT107I	GGYRCC	1 cut(s)	290
BspTI	CTTAAG	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	104
BssMI	GATC	5 cut(s)	8, 106, 196, 235, 244
BssNI	GRCGYC	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	128
BstAFI	CTTAAG	1 cut(s)	305
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	5 cut(s)	11, 109, 199, 238, 247
BstMBI	GATC	5 cut(s)	8, 106, 196, 235, 244
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	70
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	2 cut(s)	8, 106
BstYI	RGATCY	2 cut(s)	8, 106
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
CciI	TCATGA	1 cut(s)	329
CfoI	GCGC	1 cut(s)	285
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	4 cut(s)	141, 178, 217, 330
CviJI	RGCY	4 cut(s)	85, 90, 252, 301
CviKI_1	RGCY	4 cut(s)	85, 90, 252, 301
CviQI	GTAC	1 cut(s)	310
DpnI	GATC	5 cut(s)	10, 108, 198, 237, 246
DpnII	GATC	5 cut(s)	8, 106, 196, 235, 244
Eco32I	GATATC	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	60
EcoRV	GATATC	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	183
FaeI	CATG	4 cut(s)	144, 181, 220, 333
FatI	CATG	4 cut(s)	140, 177, 216, 329
FauNDI	CATATG	2 cut(s)	16, 225
Fnu4HI	GCNGC	2 cut(s)	91, 232
Fsp4HI	GCNGC	2 cut(s)	91, 232
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	2 cut(s)	91, 232
HapII	CCGG	2 cut(s)	37, 113
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	1 cut(s)	285
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	144, 181, 220, 333
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	65
HpaI	GTTAAC	1 cut(s)	151
HpaII	CCGG	2 cut(s)	37, 113
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	3 cut(s)	55, 196, 201
Hpy188III	TCNNGA	1 cut(s)	330
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	201
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	72, 144, 181
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	4 cut(s)	144, 181, 220, 333
HspAI	GCGC	1 cut(s)	283
KspAI	GTTAAC	1 cut(s)	151
Kzo9I	GATC	5 cut(s)	8, 106, 196, 235, 244
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	6 cut(s)	50, 82, 85, 126, 143, 283
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	276
MalI	GATC	5 cut(s)	10, 108, 198, 237, 246
MboI	GATC	5 cut(s)	8, 106, 196, 235, 244
MboII	GAAGA	1 cut(s)	18
MflI	RGATCY	2 cut(s)	8, 106
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	3 cut(s)	22, 109, 165
Mph1103I	ATGCAT	1 cut(s)	183
MseI	TTAA	2 cut(s)	150, 306
MslI	CAYNNNNRTG	1 cut(s)	176
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	2 cut(s)	37, 113
MspR9I	CCNGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	234
NciI	CCSGG	1 cut(s)	113
NdeI	CATATG	2 cut(s)	16, 225
NdeII	GATC	5 cut(s)	8, 106, 196, 235, 244
NlaIII	CATG	4 cut(s)	144, 181, 220, 333
NlaIV	GGNNCC	1 cut(s)	292
NsiI	ATGCAT	1 cut(s)	183
NspI	RCATGY	1 cut(s)	181
PagI	TCATGA	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	92, 233
Psp1406I	AACGTT	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	74
PsuI	RGATCY	2 cut(s)	8, 106
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	150, 306
SatI	GCNGC	2 cut(s)	91, 232
Sau3AI	GATC	5 cut(s)	8, 106, 196, 235, 244
ScrFI	CCNGG	1 cut(s)	113
SetI	ASST	4 cut(s)	87, 150, 254, 279
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SsiI	CCGC	1 cut(s)	232
SspI	AATATT	1 cut(s)	135
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	111
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	174, 267
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	2 cut(s)	150, 306
Tru9I	TTAA	2 cut(s)	150, 306
TscAI	CASTG	1 cut(s)	38
TseI	GCWGC	1 cut(s)	90
TspDTI	ATGAA	3 cut(s)	33, 129, 318
TspRI	CASTG	1 cut(s)	38
Vha464I	CTTAAG	1 cut(s)	305
XceI	RCATGY	1 cut(s)	181
XspI	CTAG	1 cut(s)	86
Zsp2I	ATGCAT	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.