Small RNA degrading nuclease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G50090 AT3G50100 AT3G50100 AT5G67240 AT5G67240 AT5G67240 AT5G67240 |
| fragaria_vesca | FvH4_1g16590 FvH4_1g16590 FvH4_4g28290 |
| malus_domestica | MD02G1178000.v1.1 MD15G1287900.v1.1 |
| prunus_persica | Prupe.6G230000_v2.0.a1 |
| pyrus_communis | pycom02g14410 pycom15g25140 |
| rosa_chinensis | RchiOBHm_Chr2g0106501 |
| rosa_laevigata | RLG00000017507 |
| rosa_roxburghii | Rroxscaffold_2G00137120 Rroxscaffold_3G00227560 |
| rosa_rugosa | Rorug02G0135700 Rorug02G0135800 Rorug02G0135900 Rorug02G0136000 Rorug05G0123100 Rorug05G0252900 Rorug05G0347700 |
| rosa_samantha | Rh2AG187300 Rh2BG198100 Rh2BG614000 Rh2CG192300 Rh2DG193400 Rh5BG226200 |
| rosa_wichuraiana | Rw2G014600 Rw2G014620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 61 |
| AcuI | CTGAAG | 1 cut(s) | 78 |
| AfaI | GTAC | 1 cut(s) | 210 |
| AgsI | TTSAA | 1 cut(s) | 173 |
| AluBI | AGCT | 3 cut(s) | 62, 169, 232 |
| AluI | AGCT | 3 cut(s) | 62, 169, 232 |
| AlwI | GGATC | 1 cut(s) | 61 |
| ApeKI | GCWGC | 1 cut(s) | 137 |
| AsuHPI | GGTGA | 1 cut(s) | 191 |
| BbvI | GCAGC | 1 cut(s) | 124 |
| BccI | CCATC | 2 cut(s) | 28, 44 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BisI | GCNGC | 1 cut(s) | 138 |
| BlsI | GCNGC | 1 cut(s) | 139 |
| BmsI | GCATC | 1 cut(s) | 118 |
| Bpu10I | CCTNAGC | 1 cut(s) | 159 |
| Bse3DI | GCAATG | 2 cut(s) | 18, 147 |
| BseGI | GGATG | 1 cut(s) | 211 |
| BseMI | GCAATG | 2 cut(s) | 18, 147 |
| BseXI | GCAGC | 1 cut(s) | 124 |
| Bsp143I | GATC | 1 cut(s) | 53 |
| BspPI | GGATC | 1 cut(s) | 61 |
| BsrDI | GCAATG | 2 cut(s) | 18, 147 |
| BssMI | GATC | 1 cut(s) | 53 |
| Bst4CI | ACNGT | 1 cut(s) | 76 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 17 |
| BstC8I | GCNNGC | 2 cut(s) | 18, 230 |
| BstDEI | CTNAG | 1 cut(s) | 159 |
| BstF5I | GGATG | 1 cut(s) | 211 |
| BstKTI | GATC | 1 cut(s) | 56 |
| BstMBI | GATC | 1 cut(s) | 53 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 17, 137 |
| BstV1I | GCAGC | 1 cut(s) | 124 |
| BstX2I | RGATCY | 1 cut(s) | 53 |
| BstYI | RGATCY | 1 cut(s) | 53 |
| BtsCI | GGATG | 1 cut(s) | 211 |
| Cac8I | GCNNGC | 2 cut(s) | 18, 230 |
| Csp6I | GTAC | 1 cut(s) | 209 |
| CviJI | RGCY | 4 cut(s) | 62, 84, 169, 232 |
| CviKI_1 | RGCY | 4 cut(s) | 62, 84, 169, 232 |
| CviQI | GTAC | 1 cut(s) | 209 |
| DdeI | CTNAG | 1 cut(s) | 159 |
| DpnI | GATC | 1 cut(s) | 55 |
| DpnII | GATC | 1 cut(s) | 53 |
| Eco57I | CTGAAG | 1 cut(s) | 78 |
| FaiI | YATR | 3 cut(s) | 43, 87, 224 |
| Fnu4HI | GCNGC | 1 cut(s) | 138 |
| FokI | GGATG | 1 cut(s) | 218 |
| Fsp4HI | GCNGC | 1 cut(s) | 138 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GluI | GCNGC | 1 cut(s) | 138 |
| HindIII | AAGCTT | 1 cut(s) | 60 |
| HphI | GGTGA | 1 cut(s) | 191 |
| Hpy188I | TCNGA | 1 cut(s) | 58 |
| Hpy188III | TCNNGA | 2 cut(s) | 122, 200 |
| HpyCH4III | ACNGT | 1 cut(s) | 76 |
| HpyCH4V | TGCA | 2 cut(s) | 11, 140 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 17, 137 |
| HpyF3I | CTNAG | 1 cut(s) | 159 |
| Kzo9I | GATC | 1 cut(s) | 53 |
| LpnPI | CCDG | 4 cut(s) | 145, 185, 225, 229 |
| Lsp1109I | GCAGC | 1 cut(s) | 124 |
| LweI | GCATC | 1 cut(s) | 118 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MalI | GATC | 1 cut(s) | 55 |
| MboI | GATC | 1 cut(s) | 53 |
| MfeI | CAATTG | 1 cut(s) | 115 |
| MflI | RGATCY | 1 cut(s) | 53 |
| MluCI | AATT | 2 cut(s) | 115, 195 |
| MnlI | CCTC | 1 cut(s) | 196 |
| MunI | CAATTG | 1 cut(s) | 115 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 17, 137 |
| NdeII | GATC | 1 cut(s) | 53 |
| PkrI | GCNGC | 1 cut(s) | 139 |
| PsuI | RGATCY | 1 cut(s) | 53 |
| RsaI | GTAC | 1 cut(s) | 210 |
| RsaNI | GTAC | 1 cut(s) | 209 |
| SatI | GCNGC | 1 cut(s) | 138 |
| Sau3AI | GATC | 1 cut(s) | 53 |
| SetI | ASST | 7 cut(s) | 64, 106, 165, 171, 181, 214, 234 |
| SfaNI | GCATC | 1 cut(s) | 118 |
| SgeI | CNNG | 9 cut(s) | 29, 134, 144, 161, 167, 182, 212, 224, 241 |
| Sse9I | AATT | 2 cut(s) | 115, 195 |
| SspMI | CTAG | 1 cut(s) | 122 |
| TaaI | ACNGT | 1 cut(s) | 76 |
| TasI | AATT | 2 cut(s) | 115, 195 |
| TseI | GCWGC | 1 cut(s) | 137 |
| TspDTI | ATGAA | 2 cut(s) | 102, 158 |
| TspGWI | ACGGA | 1 cut(s) | 180 |
| XbaI | TCTAGA | 1 cut(s) | 121 |
| XspI | CTAG | 1 cut(s) | 122 |