AT3G52140

mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005851
Physical Location & Seq
Forward (+)
19332828 .. 19341739
8912 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52140.2

Sequence Viewer

Length: 4212 bp
ATGGCTGGGAAGTCGAACAAATCGAAGGCCAAGAGAGCGGCTCAGAGCACTACCACCAATTCCACTACTGATGTTAAATCCGATGCTCCTGCTCCTCCTGTTGCTGCTACTGTTCCTGCTACTGCTCCGGTTACTGCTGCTGCTGCTCCGGTTGCTACTGCTGCTGCTCCGGTTACTGCTCCCGATAATGGCACCCTCACTGCTGTTGACTCTGCGGTGCCTGAAGCCAATGAAGTTGCTCCTACGATTCCTAAGGCTGACGAAAGTGAGTCACAAGTTGAAAATAACGATGCCCAACCCAAGCAAGGTGAACTCCGTCTTTATCCTGTGTCTGTCAAAACACAAAGTGGGGGTAAAATGGAGCTTCAATTGAACCCTGGAGACTCTGTGATGGATATAAGGCAGTTCCTCCTTGATGCTCCAGAGACGTGCTACTTCACTTGTTATGAGTTGTTACTCCGCAATAAAGATGGAGAGACTCATCATTTGGAAGACTACAATGAGATCTCTGAAGTAGCTGACATCACCATTGGTGGTTGCTCCTTGGAAATGGTTGCAGCATTGTATGATGATAGATCTATCAGAGCGCATGTTCACCGTGCCAGAGATCTTTTGTCTCTTTCAACACTTCACTCTTCTCTATCAACAACACTTGCCTTGCAGTATGACGCAGCACTGAACAAAGTTCAGAACCCTGGAGATAAACCAAAGTCTGACGTTCCAGAGCTGGAATGTTTGGGTTTTATGGAAGATGTGCCTGGCTCTCTCAAGAAGTTAATAAATTCTACATCAGAAGAGATCAGATCTGTGGAAAACATTGTGTTCTCATCGTTCAACCCTCCTCCAAGCCACAGAAGGCTTGTAGGAGATCTAATATATTTAGATGTTGTGACCTTGGAAGGTAACAAGTACTGCATAACAGGCACAACCAAAACATTTTATGTTAATTCCAGCTCAGGGAATATTCTCGATCCAAGACCAAGTAAATCTGGATTTGAAGCAGCTACGCTGATTGGACTATTACAAAAGCTTAGCTCTAAGTTTAAAAAAGCTTTCCGTGAAGTCATGGAAAAGAAAGCCTCTGCTCATCCGTTTGAAAATGTTCAATCGCTTTTGCCACCACACTCATGGCTAAGAACTTATCCAGTACCCGATCACAAGCGTGATGCAGCGAGAGCAGAAGAAGCACTTACCATTTCCTATGGTAGTGAGTTAATTGGCATGCAGAGAGATTGGAACGAAGAGTTGCAATCTTGCAGAGAGTTCCCTCACACTTCTCCTCAAGAGAGGATATTACGAGACAGGGCACTTTACAAAGTGTCTTCTGATTTTGTCGATGCAGCACTTAACGGAGCTATTGGAGTAATCAGCCGGTGTATACCACCCATAAACCCAACTGATCCAGAGTGTTTGCACATGTATGTGCACAACAACATCTTTTTCAGTTTTGCTGTTGATGCCGACATTGAACAGCTCTCCAAGAAACGTCCATCTAATCAAATGACGGAGAAGGTGTCCTCATCTGAAAAGGTTTCATGCACAGAAGGAACCTGCGATAATGAAGAGCATAACAACTGTAATGAGGCGCCACTTGTTGAGAATGAGCAGGCTACGTATGCCTCTGCAAACAATGATTTGAAAGGCACAAAATTATATCAAGAAGCTGATGTCCCAGGGCTATATAATCTGGCAATGGCCATTATTGATTACAGAGGCCATAGGGTTGTTGCTCAGAGTGTTCTACCGGGAATCCTTCAAGGGGATAAATCAGATGCGCTTTTGTACGGTTCAGTCGACAATGGCAAGAAAATATGCTGGAATGAAGATTTTCATGCTAAGGTGCTAGAGGCCGCAAAGCTTCTTCACATTAAGGAACATTCTGTTATCGATGCATCCGAAACTGTCTTTAAGTTGGCTGCACCAGTAGAGTGCAAAGGGATTGTTGGGAGTGATAACAGGCATTATCTCTTGGACTTGATGAGAGTGACACCTCGTGATGCCAATTATACGGGCCCAGAGTCACGCTTTTGTGTCCTAAGACCAGAACTGATCACATCATTTTGCCAGGCCGAATCATTGGAAAAATCAAAATTTAAAACCAAGGCTGATGAAGGGGGCGATGATTCTTCTAATGTTAGTGCTGATACTTCTAAAGTTGGTGATGCATTGATCGATGGAGAGGCAAATGGGGCTTCAAATTCTGATCAGAAATCTATTTCAGACAAGCAAAATACCACTGCCGAAGATTATGCAGCCGGGTCTTCTGAAAGTTCCAAATCATGTGATCAAATAGCATTTAACCCCAATGTCTTCACTGACTTCACATTAGGTGGCAATCAAGAGGAGATAGCTGCTGATGAAGAAAATGTGAAGAAAGTTAGCTCATACCTTGTGGATGTGGTCCTTCCAAAGTTTATAGAAGATCTTTGCACTCTCGAAGTTTCTCCAATGGATGGTCAGACTTTGACAGAAGCACTCCATGCTCATGGTGTTAATGTTCGTTACATTGGAAGAGTTGCTAATGGGGTGAAGCATTTGCCTCATTTGTGGGACCTTTGTCTGAATGAGATTACTGTAAGATCCGCAAAGCACATTTTGAAGGACATTCTAAGAGATATAGAGGATCACGATATTGGATCAGCAGTCTCACATTTCCTCAATTGTTTCTTTGGAAACTATCAAACTGCTGGGGGAAAAGCTAGCGCCAACAGCTCTACTGCCAAAAATCAAAAGAAGGATCAACCCATCACCAAGAAGGGTCAAGGAAGAGGGAAGGGAAAAGCTTCTTCAAAGAAAAGTTTTTCATCGTATATGATGGTTGACTCCAACATTCTATGGTCTGACATTCAGGAATTTGCCAAAGCGAAATATGAGTTTGAGTTGCCCGAGCTATCAAGAACTACCGCTAAAAAAGTATCTGTTCTTCGTAATCTTTGCCAAAAGGTTGGTGTCAGTATTGCTGCTCGCAAATACGACTTCAGTGCAAACACGCCTTTTGAGACGTCAGATATTTTGGATCTTCGGCCCGTAATTAAGCACTCCGTCCCTGTATGCTCTGAGGCTAAAGATCTTGTTGAGATGGGGAAGGTCCAACTGGCTGAGGGCATGCTTAGTGAATCCTACACGTTCTTTTCAGAGGCATTTTCGATACTTCAACAGGTGACTGGTCCAATGCACAGGGAAGTTGCAAACTGCTGCAGGTACCTGGCTATGGTTTTGTACCATGCAGGAGATATGGCTGGGGCCATAATGCAGCAACACAAGGAACTCATTATTAATGAGCGATGCCTTGGTTTGGACCATCCTGATACTGCCCATAGCTATGGCAATATGGCTCTTTTCTACCATGGACTGAATCAGACAGAACTTGCTCTACAAAACATGGGTCGAGCCTTGCTTCTACTTGGCCTTTCATCTGGCCCTGACCATCCAGATGTTGCAGCTACATTTATAAATGTTGCCATGATGTATCAAGACATGGGCAAAATGGACACAGCTCTACGTTATCTTCAAGAGGCTTTGAAGAAAAATGAGAGACTTCTTGGTCCTGAACACATTCAGACTGCAGTATGCTACCACGCTCTTGCCATTGCGTTCAACTGTATGGGTGCATTCAAGCTCTCACACCAGCATGAGAAGAAAACATACGACATACTTGTTAAACAATTGGGAGACGATGATTCTAGGACACGAGACTCTCTAAATTGGATGAAGACGTTTAAGATGCGTGAGCTTCAGATGACTGCACAAAAGCAGAAAGGACAGGCAGCTAATGCAGCCAACACGCAAAAGGCTATCGATCTCCTAAAGGCACATCCAGACCTGATACATGCGTTCCAAAACGCAGCTGCTACTGGGAGGACAAATGCACTGAACTCTGCTGTCCTTGGGGAGACTCAACCACGGGGCAGAGGTTTTGATGAAAGAGCAGCTCGTGCTGCAGCTGAAGTTAGGAAGAAAGCAGCTGCAAAGGGGCTACTGGTTCGCCCCCAGGGTGGTGTTCCAGTTCAAGCCATGCCACCGCTCTCTCAGCTCCAAAACATGATCAATACCGCCACAGTTTCGTCTGAGAAAGGTGGAGAAAACGGGGAGGCAAAGGTACAAGAGAAGAAAGAATCCTCTGAAAATGGGAAAACAGAAAACCTGGCTCCTGCAGGATTAGGTGCTGGTTTAACATCTTTGGATAAGAAGAAGCAAAAAGCCAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU CLU_N DUF727 TPR_10 TPR_12 eIF3_p135

Protein Analysis

1403

Amino Acids

153.26

Weight (kDa)

5.95

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLU_N PF15044 128 - 204 6.3e-14 Mitochondrial function, CLU-N-term
CLU PF13236 411 - 669 2.3e-75 Clustered mitochondria
eIF3_p135 PF12807 814 - 997 5.1e-48 Translation initiation factor eIF3 subunit 135
TPR_12 PF13424 1073 - 1136 3.7e-08 Tetratricopeptide repeat
TPR_NPHP3 PF24885 1109 - 1250 6.8e-13 Nephrocystin-3 TPR domain
TPR_12 PF13424 1149 - 1222 9.3e-15 Tetratricopeptide repeat
TPR_10 PF13374 1150 - 1190 4.3e-09 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3452
AasI GACNNNNNNGTC 1 cut(s) 3543
AatII GACGTC 1 cut(s) 3005
Acc36I ACCTGC 2 cut(s) 1559, 3189
Acc65I GGTACC 1 cut(s) 3201
AccB1I GGYRCC 4 cut(s) 191, 217, 1585, 3201
AccB7I CCANNNNNTGG 1 cut(s) 2453
AccBSI CCGCTC 2 cut(s) 38, 4024
AccI GTMKAC 2 cut(s) 1378, 1794
AciI CCGC 8 cut(s) 38, 215, 460, 1851, 2583, 2904, 4022, 4053
AclWI GGATC 7 cut(s) 965, 1394, 2574, 2631, 2644, 2745, 3024
AcoI YGGCCR 1 cut(s) 1695
AcsI RAATTY 4 cut(s) 781, 2090, 2197, 2852
AcuI CTGAAG 5 cut(s) 243, 531, 2962, 3719, 3966
AcyI GRCGYC 2 cut(s) 1586, 3002
AdeI CACNNNGTG 2 cut(s) 347, 1994
AfaI GTAC 6 cut(s) 911, 1149, 1784, 3203, 3221, 4101
AfiI CCNNNNNNNGG 8 cut(s) 188, 305, 957, 1759, 2453, 3211, 3295, 3995
AflIII ACRYGT 2 cut(s) 1416, 3123
AjiI CACGTC 1 cut(s) 429
AjnI CCWGG 8 cut(s) 376, 694, 757, 1672, 2064, 3204, 3990, 4143
AleI CACNNNNGTG 1 cut(s) 1161
Alw21I GWGCWC 2 cut(s) 50, 1428
Alw44I GTGCAC 1 cut(s) 1424
AlwI GGATC 7 cut(s) 965, 1394, 2574, 2631, 2644, 2745, 3024
Ama87I CYCGRG 1 cut(s) 2885
ApaI GGGCCC 1 cut(s) 2015
ApaLI GTGCAC 1 cut(s) 1424
ApoI RAATTY 4 cut(s) 781, 2090, 2197, 2852
ArsI GACNNNNNNTTYG 4 cut(s) 469, 501, 3370, 3402
AseI ATTAAT 1 cut(s) 3276
Asp700I GAANNNNTTC 4 cut(s) 1101, 1827, 2782, 3555
Asp718I GGTACC 1 cut(s) 3201
AspLEI GCGC 4 cut(s) 589, 1588, 1777, 2705
AsuC2I CCSGG 2 cut(s) 1746, 2257
AsuHPI GGTGA 7 cut(s) 320, 517, 587, 2171, 2539, 2740, 3172
AsuNHI GCTAGC 1 cut(s) 2699
AvaI CYCGRG 1 cut(s) 2885
AvaII GGWCC 6 cut(s) 2401, 2551, 3088, 3167, 3298, 3545
AxyI CCTNAGG 1 cut(s) 252
BaeGI GKGCMC 3 cut(s) 1309, 1428, 2015
BaeI ACNNNNGTAYC 2 cut(s) 3818, 3851
BalI TGGCCA 1 cut(s) 1697
BanI GGYRCC 4 cut(s) 191, 217, 1585, 3201
BanII GRGCYC 1 cut(s) 2015
BarI GAAGNNNNNNTAC 4 cut(s) 2907, 2939, 3629, 3661
BauI CACGAG 3 cut(s) 1992, 3690, 3933
BbsI GAAGAC 5 cut(s) 498, 1314, 2253, 2302, 3719
Bbv12I GWGCWC 2 cut(s) 50, 1428
BbvCI CCTCAGC 1 cut(s) 3099
BcgI CGANNNNNNTGC 6 cut(s) 71, 105, 2231, 2265, 2963, 2997
BciT130I CCWGG 8 cut(s) 378, 696, 759, 1674, 2066, 3206, 3992, 4145
BclI TGATCA 4 cut(s) 2049, 2203, 2284, 4044
BcnI CCSGG 2 cut(s) 1746, 2257
BfaI CTAG 3 cut(s) 1844, 2700, 3684
BfmI CTRYAG 4 cut(s) 3196, 3564, 3939, 4152
BfoI RGCGCY 2 cut(s) 1589, 2706
BfuAI ACCTGC 2 cut(s) 1559, 3189
BglII AGATCT 7 cut(s) 504, 575, 607, 803, 868, 2422, 3067
BlpI GCTNAGC 1 cut(s) 1031
BmcAI AGTACT 1 cut(s) 911
Bme18I GGWCC 6 cut(s) 2401, 2551, 3088, 3167, 3298, 3545
BmeT110I CYCGRG 1 cut(s) 2885
BmgBI CACGTC 1 cut(s) 429
BmiI GGNNCC 9 cut(s) 193, 219, 1549, 1587, 2013, 2552, 3203, 3244, 4149
BmrI ACTGGG 1 cut(s) 3864
BmtI GCTAGC 1 cut(s) 2703
BmuI ACTGGG 1 cut(s) 3864
BoxI GACNNNNGTC 1 cut(s) 2556
BpiI GAAGAC 5 cut(s) 498, 1314, 2253, 2302, 3719
BplI GAGNNNNNCTC 2 cut(s) 25, 57
BpmI CTGGAG 3 cut(s) 399, 405, 717
Bpu10I CCTNAGC 3 cut(s) 955, 1836, 3099
Bpu1102I GCTNAGC 1 cut(s) 1031
BpuEI CTTGAG 2 cut(s) 752, 1266
BpuMI CCSGG 2 cut(s) 1746, 2257
Bsa29I ATCGAT 3 cut(s) 1887, 2172, 3798
BsaAI YACGTR 1 cut(s) 1614
BsaHI GRCGYC 2 cut(s) 1586, 3002
BsaWI WCCGGW 3 cut(s) 127, 148, 169
BsaXI ACNNNNNCTCC 4 cut(s) 372, 402, 1499, 1529
Bsc4I CCNNNNNNNGG 8 cut(s) 188, 305, 957, 1759, 2453, 3211, 3295, 3995
Bse118I RCCGGY 1 cut(s) 1371
Bse1I ACTGG 7 cut(s) 1145, 1922, 3099, 3169, 3859, 3984, 4004
Bse21I CCTNAGG 1 cut(s) 252
Bse3DI GCAATG 2 cut(s) 1698, 3588
BseBI CCWGG 8 cut(s) 378, 696, 759, 1674, 2066, 3206, 3992, 4145
BseCI ATCGAT 3 cut(s) 1887, 2172, 3798
BseGI GGATG 8 cut(s) 1087, 1892, 2401, 2458, 3301, 3427, 3714, 3814
BseLI CCNNNNNNNGG 8 cut(s) 188, 305, 957, 1759, 2453, 3211, 3295, 3995
BseMI GCAATG 2 cut(s) 1698, 3588
BseMII CTCAG 7 cut(s) 56, 969, 1745, 3048, 3090, 4043, 4059
BseNI ACTGG 7 cut(s) 1145, 1922, 3099, 3169, 3859, 3984, 4004
BseRI GAGGAG 4 cut(s) 84, 831, 1269, 2357
BseSI GKGCMC 3 cut(s) 1309, 1428, 2015
BseYI CCCAGC 3 cut(s) 5, 2687, 3239
BsgI GTGCAG 2 cut(s) 1902, 3729
BshNI GGYRCC 4 cut(s) 191, 217, 1585, 3201
BshVI ATCGAT 3 cut(s) 1887, 2172, 3798
BsiHKAI GWGCWC 2 cut(s) 50, 1428
BsiHKCI CYCGRG 1 cut(s) 2885
BsiSI CCGG 6 cut(s) 128, 149, 170, 1372, 1745, 2256
BslFI GGGAC 3 cut(s) 1655, 2564, 3029
BslI CCNNNNNNNGG 8 cut(s) 188, 305, 957, 1759, 2453, 3211, 3295, 3995
BsmBI CGTCTC 3 cut(s) 419, 2993, 3666
BsmFI GGGAC 3 cut(s) 1655, 2564, 3029
BsmI GAATGC 1 cut(s) 3611
BsoBI CYCGRG 1 cut(s) 2885
Bsp120I GGGCCC 1 cut(s) 2011
Bsp1286I GDGCHC 4 cut(s) 50, 1309, 1428, 2015
Bsp1720I GCTNAGC 1 cut(s) 1031
Bsp19I CCATGG 1 cut(s) 3346
BspACI CCGC 8 cut(s) 38, 215, 460, 1851, 2583, 2904, 4022, 4053
BspCNI CTCAG 7 cut(s) 55, 968, 1744, 3049, 3091, 4042, 4060
BspDI ATCGAT 3 cut(s) 1887, 2172, 3798
BspLI GGNNCC 9 cut(s) 193, 219, 1549, 1587, 2013, 2552, 3203, 3244, 4149
BspMAI CTGCAG 4 cut(s) 3200, 3568, 3943, 4156
BspMI ACCTGC 2 cut(s) 1559, 3189
BspOI GCTAGC 1 cut(s) 2703
BspPI GGATC 7 cut(s) 965, 1394, 2574, 2631, 2644, 2745, 3024
BspQI GCTCTTC 1 cut(s) 1557
BspT107I GGYRCC 4 cut(s) 191, 217, 1585, 3201
BsrBI CCGCTC 2 cut(s) 38, 4024
BsrDI GCAATG 2 cut(s) 1698, 3588
BsrFI RCCGGY 1 cut(s) 1371
BsrI ACTGG 7 cut(s) 1145, 1922, 3099, 3169, 3859, 3984, 4004
BssAI RCCGGY 1 cut(s) 1371
BssNAI GTATAC 1 cut(s) 1379
BssNI GRCGYC 2 cut(s) 1586, 3002
BssSI CACGAG 3 cut(s) 1992, 3690, 3933
BssT1I CCWWGG 6 cut(s) 543, 894, 2100, 3289, 3346, 3886
Bst1107I GTATAC 1 cut(s) 1379
Bst2BI CACGAG 3 cut(s) 1992, 3690, 3933
Bst2UI CCWGG 8 cut(s) 378, 696, 759, 1674, 2066, 3206, 3992, 4145
Bst4CI ACNGT 8 cut(s) 112, 599, 1577, 1787, 1903, 2575, 3602, 4060
Bst6I CTCTTC 6 cut(s) 640, 789, 1236, 1557, 2506, 2761
BstACI GRCGYC 2 cut(s) 1586, 3002
BstAPI GCANNNNNTGC 3 cut(s) 2480, 3773, 3935
BstBAI YACGTR 1 cut(s) 1614
BstC8I GCNNGC 5 cut(s) 1223, 1608, 2701, 2965, 3107
BstDSI CCRYGG 2 cut(s) 3346, 3902
BstF5I GGATG 8 cut(s) 1087, 1892, 2401, 2458, 3301, 3427, 3714, 3814
BstH2I RGCGCY 2 cut(s) 1589, 2706
BstHHI GCGC 4 cut(s) 589, 1588, 1777, 2705
BstNI CCWGG 8 cut(s) 378, 696, 759, 1674, 2066, 3206, 3992, 4145
BstNSI RCATGY 5 cut(s) 593, 1225, 1420, 3109, 3833
BstPAI GACNNNNGTC 1 cut(s) 2556
BstSFI CTRYAG 4 cut(s) 3196, 3564, 3939, 4152
BstSLI GKGCMC 3 cut(s) 1309, 1428, 2015
BstSNI TACGTA 1 cut(s) 1614
BstV2I GAAGAC 5 cut(s) 498, 1314, 2253, 2302, 3719
BstX2I RGATCY 9 cut(s) 504, 575, 607, 803, 868, 2422, 2579, 3016, 3067
BstXI CCANNNNNNTGG 4 cut(s) 1128, 2486, 2945, 3323
BstYI RGATCY 9 cut(s) 504, 575, 607, 803, 868, 2422, 2579, 3016, 3067
BstZ17I GTATAC 1 cut(s) 1379
Bsu15I ATCGAT 3 cut(s) 1887, 2172, 3798
Bsu36I CCTNAGG 1 cut(s) 252
BsuTUI ATCGAT 3 cut(s) 1887, 2172, 3798
BtgI CCRYGG 2 cut(s) 3346, 3902
BtgZI GCGATG 2 cut(s) 2133, 3298
BtrI CACGTC 1 cut(s) 429
BtsCI GGATG 8 cut(s) 1087, 1892, 2401, 2458, 3301, 3427, 3714, 3814
BtsI GCAGTG 2 cut(s) 198, 2235
BtsIMutI CAGTG 6 cut(s) 198, 674, 2235, 2313, 2986, 3869
BveI ACCTGC 2 cut(s) 1559, 3189
Cac8I GCNNGC 5 cut(s) 1223, 1608, 2701, 2965, 3107
CfoI GCGC 4 cut(s) 589, 1588, 1777, 2705
Cfr10I RCCGGY 1 cut(s) 1371
ClaI ATCGAT 3 cut(s) 1887, 2172, 3798
CseI GACGC 1 cut(s) 677
Csp6I GTAC 6 cut(s) 910, 1148, 1783, 3202, 3220, 4100
CviQI GTAC 6 cut(s) 910, 1148, 1783, 3202, 3220, 4100
DinI GGCGCC 1 cut(s) 1587
DraI TTTAAA 2 cut(s) 1045, 2095
DraIII CACNNNGTG 2 cut(s) 347, 1994
DrdI GACNNNNNNGTC 1 cut(s) 3543
DseDI GACNNNNNNGTC 1 cut(s) 3543
EaeI YGGCCR 1 cut(s) 1695
Eam1104I CTCTTC 6 cut(s) 640, 789, 1236, 1557, 2506, 2761
EarI CTCTTC 6 cut(s) 640, 789, 1236, 1557, 2506, 2761
Eco105I TACGTA 1 cut(s) 1614
Eco130I CCWWGG 6 cut(s) 543, 894, 2100, 3289, 3346, 3886
Eco24I GRGCYC 1 cut(s) 2015
Eco47I GGWCC 6 cut(s) 2401, 2551, 3088, 3167, 3298, 3545
Eco57I CTGAAG 5 cut(s) 243, 531, 2962, 3719, 3966
Eco81I CCTNAGG 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 2885
EcoO109I RGGNCCY 1 cut(s) 2551
EcoRII CCWGG 8 cut(s) 376, 694, 757, 1672, 2064, 3204, 3990, 4143
EcoT14I CCWWGG 6 cut(s) 543, 894, 2100, 3289, 3346, 3886
EcoT22I ATGCAT 2 cut(s) 1894, 2167
EcoT38I GRGCYC 1 cut(s) 2015
EgeI GGCGCC 1 cut(s) 1587
EheI GGCGCC 1 cut(s) 1587
ErhI CCWWGG 6 cut(s) 543, 894, 2100, 3289, 3346, 3886
Esp3I CGTCTC 3 cut(s) 419, 2993, 3666
FalI AAGNNNNNCTT 2 cut(s) 1173, 1205
FaqI GGGAC 3 cut(s) 1655, 2564, 3029
FbaI TGATCA 4 cut(s) 2049, 2203, 2284, 4044
FblI GTMKAC 2 cut(s) 1378, 1794
FokI GGATG 8 cut(s) 1074, 1879, 2408, 2465, 3288, 3414, 3721, 3801
FriOI GRGCYC 1 cut(s) 2015
FspBI CTAG 3 cut(s) 1844, 2700, 3684
GlaI GCGC 4 cut(s) 588, 1587, 1776, 2704
GsaI CCCAGC 3 cut(s) 9, 2691, 3243
GsuI CTGGAG 3 cut(s) 399, 405, 717
HaeII RGCGCY 2 cut(s) 1589, 2706
HapII CCGG 6 cut(s) 128, 149, 170, 1372, 1745, 2256
HgaI GACGC 1 cut(s) 677
HhaI GCGC 4 cut(s) 589, 1588, 1777, 2705
Hin1I GRCGYC 2 cut(s) 1586, 3002
Hin6I GCGC 4 cut(s) 587, 1586, 1775, 2703
HinP1I GCGC 4 cut(s) 587, 1586, 1775, 2703
HincII GTYRAC 3 cut(s) 208, 1795, 2821
HindII GTYRAC 3 cut(s) 208, 1795, 2821
HindIII AAGCTT 4 cut(s) 1028, 1050, 1856, 2781
HpaII CCGG 6 cut(s) 128, 149, 170, 1372, 1745, 2256
HphI GGTGA 7 cut(s) 320, 517, 587, 2171, 2539, 2740, 3172
Hpy166II GTNNAC 7 cut(s) 208, 311, 595, 1379, 1426, 1795, 2821
Hpy8I GTNNAC 7 cut(s) 208, 311, 595, 1379, 1426, 1795, 2821
HpyCH4III ACNGT 8 cut(s) 112, 599, 1577, 1787, 1903, 2575, 3602, 4060
HpyCH4IV ACGT 8 cut(s) 428, 717, 1486, 1613, 3002, 3125, 3502, 3716
HpySE526I ACGT 8 cut(s) 428, 717, 1486, 1613, 3002, 3125, 3502, 3716
Hsp92I GRCGYC 2 cut(s) 1586, 3002
HspAI GCGC 4 cut(s) 587, 1586, 1775, 2703
KasI GGCGCC 1 cut(s) 1585
KpnI GGTACC 1 cut(s) 3205
Ksp22I TGATCA 4 cut(s) 2049, 2203, 2284, 4044
LguI GCTCTTC 1 cut(s) 1557
MaeI CTAG 3 cut(s) 1844, 2700, 3684
MaeII ACGT 8 cut(s) 428, 717, 1486, 1613, 3002, 3125, 3502, 3716
MbiI CCGCTC 2 cut(s) 38, 4024
MfeI CAATTG 3 cut(s) 368, 2659, 3665
MflI RGATCY 9 cut(s) 504, 575, 607, 803, 868, 2422, 2579, 3016, 3067
MhlI GDGCHC 4 cut(s) 50, 1309, 1428, 2015
MlsI TGGCCA 1 cut(s) 1697
MluNI TGGCCA 1 cut(s) 1697
Mly113I GGCGCC 1 cut(s) 1586
MlyI GAGTC 8 cut(s) 203, 278, 377, 472, 2027, 2816, 3689, 3889
MmeI TCCRAC 2 cut(s) 2850, 3115
Mox20I TGGCCA 1 cut(s) 1697
Mph1103I ATGCAT 2 cut(s) 1894, 2167
MroXI GAANNNNTTC 4 cut(s) 1101, 1827, 2782, 3555
MscI TGGCCA 1 cut(s) 1697
MslI CAYNNNNRTG 8 cut(s) 1126, 1161, 1419, 1421, 2484, 3321, 3432, 3630
Msp20I TGGCCA 1 cut(s) 1697
MspA1I CMGCKG 3 cut(s) 3848, 3944, 3965
MspI CCGG 6 cut(s) 128, 149, 170, 1372, 1745, 2256
MunI CAATTG 3 cut(s) 368, 2659, 3665
Mva1269I GAATGC 1 cut(s) 3611
MvaI CCWGG 8 cut(s) 378, 696, 759, 1674, 2066, 3206, 3992, 4145
NarI GGCGCC 1 cut(s) 1586
NciI CCSGG 2 cut(s) 1746, 2257
NcoI CCATGG 1 cut(s) 3346
NheI GCTAGC 1 cut(s) 2699
NlaIV GGNNCC 9 cut(s) 193, 219, 1549, 1587, 2013, 2552, 3203, 3244, 4149
NmuCI GTSAC 5 cut(s) 270, 889, 1984, 2019, 3160
NsiI ATGCAT 2 cut(s) 1894, 2167
NspI RCATGY 5 cut(s) 593, 1225, 1420, 3109, 3833
OliI CACNNNNGTG 1 cut(s) 1161
PaeI GCATGC 2 cut(s) 1225, 3109
PasI CCCWGGG 2 cut(s) 1673, 3991
PciI ACATGT 1 cut(s) 1416
PciSI GCTCTTC 1 cut(s) 1557
PcsI WCGNNNNNNNCGW 3 cut(s) 20, 1791, 1893
PctI GAATGC 1 cut(s) 3611
PdmI GAANNNNTTC 4 cut(s) 1101, 1827, 2782, 3555
PfeI GAWTC 8 cut(s) 247, 1749, 2072, 2123, 3116, 3355, 3680, 4115
PflMI CCANNNNNTGG 1 cut(s) 2453
PleI GAGTC 8 cut(s) 203, 277, 377, 472, 2026, 2816, 3689, 3889
PluTI GGCGCC 1 cut(s) 1589
PpsI GAGTC 8 cut(s) 203, 277, 377, 472, 2026, 2816, 3689, 3889
Ppu21I YACGTR 1 cut(s) 1614
PpuMI RGGWCCY 1 cut(s) 2551
PscI ACATGT 1 cut(s) 1416
PshAI GACNNNNGTC 1 cut(s) 2556
PshBI ATTAAT 1 cut(s) 3276
PsiI TTATAA 1 cut(s) 3452
Psp5II RGGWCCY 1 cut(s) 2551
Psp6I CCWGG 8 cut(s) 376, 694, 757, 1672, 2064, 3204, 3990, 4143
PspFI CCCAGC 3 cut(s) 5, 2687, 3239
PspGI CCWGG 8 cut(s) 376, 694, 757, 1672, 2064, 3204, 3990, 4143
PspN4I GGNNCC 9 cut(s) 193, 219, 1549, 1587, 2013, 2552, 3203, 3244, 4149
PspOMI GGGCCC 1 cut(s) 2011
PspPPI RGGWCCY 1 cut(s) 2551
PsrI GAACNNNNNNTAC 2 cut(s) 3357, 3389
PstI CTGCAG 4 cut(s) 3200, 3568, 3943, 4156
PsuI RGATCY 9 cut(s) 504, 575, 607, 803, 868, 2422, 2579, 3016, 3067
PvuII CAGCTG 3 cut(s) 3848, 3944, 3965
RsaI GTAC 6 cut(s) 911, 1149, 1784, 3203, 3221, 4101
RsaNI GTAC 6 cut(s) 910, 1148, 1783, 3202, 3220, 4100
RseI CAYNNNNRTG 8 cut(s) 1126, 1161, 1419, 1421, 2484, 3321, 3432, 3630
SalI GTCGAC 1 cut(s) 1793
SapI GCTCTTC 1 cut(s) 1557
SbfI CCTGCAGG 1 cut(s) 4156
ScaI AGTACT 1 cut(s) 911
SchI GAGTC 8 cut(s) 203, 278, 377, 472, 2027, 2816, 3689, 3889
SdaI CCTGCAGG 1 cut(s) 4156
SduI GDGCHC 4 cut(s) 50, 1309, 1428, 2015
SfcI CTRYAG 4 cut(s) 3196, 3564, 3939, 4152
SfoI GGCGCC 1 cut(s) 1587
SinI GGWCC 6 cut(s) 2401, 2551, 3088, 3167, 3298, 3545
SmiMI CAYNNNNRTG 8 cut(s) 1126, 1161, 1419, 1421, 2484, 3321, 3432, 3630
SmlI CTYRAG 2 cut(s) 767, 1281
SmoI CTYRAG 2 cut(s) 767, 1281
SnaBI TACGTA 1 cut(s) 1614
SphI GCATGC 2 cut(s) 1225, 3109
Sse8387I CCTGCAGG 1 cut(s) 4156
SsiI CCGC 8 cut(s) 38, 215, 460, 1851, 2583, 2904, 4022, 4053
SspDI GGCGCC 1 cut(s) 1585
SspI AATATT 1 cut(s) 964
SspMI CTAG 3 cut(s) 1844, 2700, 3684
StyI CCWWGG 6 cut(s) 543, 894, 2100, 3289, 3346, 3886
TaaI ACNGT 8 cut(s) 112, 599, 1577, 1787, 1903, 2575, 3602, 4060
TaiI ACGT 8 cut(s) 431, 720, 1489, 1616, 3005, 3128, 3505, 3719
TatI WGTACW 1 cut(s) 909
TauI GCSGC 2 cut(s) 41, 1853
TfiI GAWTC 8 cut(s) 247, 1749, 2072, 2123, 3116, 3355, 3680, 4115
TscAI CASTG 6 cut(s) 205, 681, 2242, 2320, 2986, 3876
TseFI GTSAC 5 cut(s) 270, 889, 1984, 2019, 3160
Tsp45I GTSAC 5 cut(s) 270, 889, 1984, 2019, 3160
TspGWI ACGGA 6 cut(s) 305, 1046, 1080, 1365, 1520, 3031
TspRI CASTG 6 cut(s) 205, 681, 2242, 2320, 2986, 3876
Van91I CCANNNNNTGG 1 cut(s) 2453
VneI GTGCAC 1 cut(s) 1424
VpaK11BI GGWCC 6 cut(s) 2401, 2551, 3088, 3167, 3298, 3545
VspI ATTAAT 1 cut(s) 3276
XapI RAATTY 4 cut(s) 781, 2090, 2197, 2852
XceI RCATGY 5 cut(s) 593, 1225, 1420, 3109, 3833
XcmI CCANNNNNNNNNTGG 1 cut(s) 1125
XmiI GTMKAC 2 cut(s) 1378, 1794
XmnI GAANNNNTTC 4 cut(s) 1101, 1827, 2782, 3555
XspI CTAG 3 cut(s) 1844, 2700, 3684
ZraI GACGTC 1 cut(s) 3003
ZrmI AGTACT 1 cut(s) 911
Zsp2I ATGCAT 2 cut(s) 1894, 2167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.