RLG00000008410

mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005851
Physical Location & Seq
Reverse (-)
30206842 .. 30219435
12594 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008410

Sequence Viewer

Length: 4287 bp
ATGGCTGGAAAATCAAACAAAGGGAGGAACCGGAGAGGGTCACATAATGCTGCAAGTTCGTCTGATACGGTGGTCCAGTCTGATGCTCCTGTGAAAGACAACTCTAAAGATGAGTCGAATGCTTCAGAGTCCGTCAAGGCCAATGCTAATGGTGTTCCAACTGTGCAAGAGTCAACTAGTGACAAGCTGGAGGTAAAGGGTTCTGAAACTAATGTTGCAGTCCTCGAACCAAAGCAAGGTGAATCTGAAACAGAAAATTCAGCTGGCCAACCTAAGCAAGGTGACCTTCATCTTTACCCTGTCTCTGTCAAGACACAAAGTGGCGAGAAGCTAGAACTACAATTGAACCCTGGAGATTCTGTTATGGATATAAGACAGTTTCTGCTTGATGCTCCTGAGACATGCTTCTTTACATGCTATGACTTGTTGCTACACACCAAAGATGGCTCAACCTATCATTTGGAAGATTTTAATGAAATCTCTGAAGTTGCTGACATTACTATTGGTGGATGCTCCTTGGAAATGGTTCCAGCTTTATATGATGATAGATCTATAAGGGCTCATGTTCATCGTACCAGAGAATTACTCTCACTTTCCACACTTCATGCGTCGCTATCAACATCGCTTGCATTACAATATGAGACGGCTCAGAACAAAGTAGCGACTCCTGGAGATACCATCAAAACTGAGGTCCCTGAGCTTGATGGTTTGGGTTTTATGGAGGATGTTGCTGGTGCATTGAGTAATTTGCTCTCATCACCCTCAAAAGAGATCAAATGCGTAGAGAGTATTGTGTTTTCATCCTTCAATCCTCCACCAAGCTATAGAAGGCTGGTCGGAGATTTGATTTATCTGGATGTCGTAACGTTGGAGGGTAATAAGCTTTGTATTACGGGGACTACAAAAATGTTTTATGTCAATTCAAGCTCCGTAAATAATACCCTTAATCCCAGGCCAAGCAAAACTTATCCAGAAGCGACCACACTTGTCGGGATTTTGCAAAAAATCAGCTCTAAGTTCCAAAAAGCTTTTCGTGAAATTTTGGAGTGGAGAGCTTCTGCACATCCTTTTGAAAATGTGCAATCTCTGTTACCACCAAATTCATGGTTAGGGTTACATCCAGTTCCAGATCACAAACGTGATGCAGCCAGAGCAGAGGATGCACTGACCCTCTCTTATGGTAGTGAGCTAATTGGTATGCAAAGGGATTGGAATGAGGAGTTGCAATCTTGTAGGGAATTTCCACATACAACTCCTCAGGAAAGAATTTTGCGGGATAGGGCTCTCTACAAAGTGACATCAGACTTTGTGGATGCAGCAATCAGTGGTGCTGTTGGAGTTATCAGCAGATGCATACCACCTATAAATCCAACTGATCCCGAGTGCTTCCACATGTATGTTCACAATAACATCTTCTTCAGTTTCGCTGTTGATGCGGATCTTGAGCAGCTGTCTAAGAACCATATGTCAGTTTCCAATTCGAAAATGGGGAGCACCGGCTCTCTAGGCAGTTCTTCTGAAAAGTCTACTGGCAGTTTGTTGCATAGAGAGAGTGAAATCCCCAATGGGGAAAAATGTGACGCGTCATGCGCAGGGGAATGCCACGATGCCATGGAATCAGCTGCTGAGACACAATTGGGTGAGACTGAGCAGGCTACTTATGCTTCTGCAAATAATGATTTGAAAGGCACCAAGGCATACCAGGAAGCCGATGTCCCTGGACTTTATAATCTTGCTATGGCCATAATTGATTACAGGGGCCATAGAGTAGTAGCTCAGAGTGTTTTGCCAGGCATTCTTCAAGGGGATAAATCAGACTCTCTTTTATATGGTTCTGTTGATAATGGGAAAAAGATATGCTGGAATGAGGATTTTCATTCCAAGGTGGTGGAGGCTGCTAAACGCCTTCATTTGAAAGAACACACAGTCCTTGATGGATCTGGAAATGTTTTCAAGTTAGCTGCACCAGTCGAATGCAAGGGTATTGTTGGTAGTGATGACAGGCATTATCTTCTTGACTTGATGAGAGTAACTCCTCGTGATGCAAACTTCACTGGATCTGGGTCTCGATTTTGTATCTTGAGACCGGAACTAATTACTTCCTATTGCCAGGTCCTTGATGCAGAGAAATCAAAATCCAAGTCTAAATGTGAAGGAGAGGCTCAGGTCACCGCTGATGGGCCAAACGATAACCAGGACATCGCAGAAAAAGAGAAGACCATTGATGCACAAGAAATTGTCTCACTACCAGCTGAAAGCTCTGAATCACGTGAGGAAACTCTTTTCAACCCTAATGTCTTCACTGAGTTTAAGTTGGCTGGAAATGCGGAGGAGATAGCAACAGATGAAGAAAATGTGAGGAAAGCCAGTTTGTATCTTACTGAGGTTGTTCTTCCGAAGTTCATACAAGATCTTTGCACACTTGAAGTATCACCCATGGATGGGCAGACACTAACTGAAGCACTCCATGCTCATGGAATTAATGTTCGTTATATTGGAAAAGTGGCTGATGGGACCAGGCATTTACCTCATCTTTGGGATCTTTGTTCTAATGAGATTGTGGTTAGATCAGCCAAGCACATTCTTAAGGATGTCTTGAGAGATACAGAGGATCATGATATTGGGCCTGCAATCTGCCATTTCTTCAACTGTTTTTTCGGAAGCTATCAAGCTGTTGGCTCAAAGGTCGCTGCTAATAGTTCTCAGTCTAGAACCCCCAAAAAAGAACAAGCAGGTCATCAATCTCCGGGAAAACGGTCAAAGGGACAAGGAAGATGGAAGACTGGAGCTTCTACAAGGAAGAGTGTATCTTCATATATGCATGTTAGCTCAGAGACTCTATGGTCTGACATTCAAGAATTTGCCAAACTCAAATATGAGTTTGAGTTGCCAAAGGATGCTAGGATGCATGTAAAGAAAGATTCGGTTATCCGTAATCTTTGCCAAAAGGTGGGCATTACAATTGCAGCTCGCAGATATGATCTGAAATCTGCAGCACCTTTTGAAATATCAGATATCTTGAATCTTCAACCTGTAGTGAAACACTCTGTTCCTGTTTGTTCAGAAGCTAAGGAGCTTGTGGAAACAGGGAAAATCCAATTGGCTGAGGGAATGTTGAGTGAAGCCTACACATTATTTTCCGAGGCCTTTTCTATACTTCAGCAGGTTACAGGCCCAATGCATCGGGAGGTTGCTAACTGCTGTCGGTATCTTGCAATGGTTCTATATCATGCTGGAGACATGGCGGGAGCCATAATGCAACAGCATAAGGAGCTAATTATAAACGAGCGTTGCCTGGGTTTGGACCACCCTGACACTGCTCACAGCTATGGGAATATGGCTCTTTTCTATCATGGACTTAACCAAACAGAACTCGCCTTACGACATATGTCCCGGGCATTGCTCCTGTTAAGTTTGTCATCTGGCCCAGATCATCCTGATGTCGCAGCAACATTCATTAATGTTGCTATGATGTACCAGGATCTTGGGAAGATGGACACTGCTCTTCGATATTTGCAAGAGGCTTTGAAAAAGAATGAAAGGCTTCTGGGCGAGGAACATATCCAAACTGCTGTATGCTATCATGCACTTGCTATTGCATTTAATTGTATGGGCGCCTTCAAGCTCTCCCACCAGCATGAGAAGAAAACTTATGATATACTTGTCAAACAACTGGGTGAGGAGGATTCGAGGACACGTGACTCTCAAAACTGGATGAAGACATTTAAGTTGCGCGAGCAACAGATGAATGCACAAAAGCAAAAAGGTCAAGCTTTGAATGCCGCTTCAGCTCAAAAGGCAATCGACATGTTAAAGGCCAATCCTGACTTGATGCAGGCATTCCAATCTGCTGCTATAGCCGGCGGGTCTGGGAGTTCCAACACTTCTGTCAACAAATCTCTTAATGCTGCGGCAATAATGGGTGAAACTCTTCCCCGAGGGAGGGGAGTTGATGAGAGGGCTGCACGAGCAGCAGCCGAAATGAGGAAGAAGGCAGCAGCGAGGGGCCTCTTAATACGTCAACACGGTGTTCCGGTCCAAGCTTTGCCTCCACTGACTCATCTCCTCAATATCATGAGTGCAGCAGGTGGGGCCCCAGATTCAGTGGAAAATGGAGAAACCAATGGAGCGAAGGAAGGCAACAACCATCCTTCAAATGGCCCAGCAGATGCAAAAACTAACCAACCATCATTAGAGCCAGAAGGTCAACCTCCAGTTGGGTTGGGCAGAGGCTTAGCTGCACTTGATGGCAAGAAACAAAAGTCGAAAGCCAAAGCAGCATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU CLU_N DUF727 TPR_10 TPR_12 eIF3_p135

Protein Analysis

1429

Amino Acids

156.07

Weight (kDa)

5.93

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLU_N PF15044 119 - 195 4.7e-14 Mitochondrial function, CLU-N-term
CLU PF13236 403 - 684 1.6e-74 Clustered mitochondria
eIF3_p135 PF12807 810 - 994 5.4e-48 Translation initiation factor eIF3 subunit 135
TPR_12 PF13424 1071 - 1134 1.2e-08 Tetratricopeptide repeat
TPR_NPHP3 PF24885 1106 - 1228 1.1e-12 Nephrocystin-3 TPR domain
TPR_12 PF13424 1110 - 1177 1.1e-11 Tetratricopeptide repeat
TPR_12 PF13424 1147 - 1220 6.2e-14 Tetratricopeptide repeat
TPR_10 PF13374 1148 - 1188 1.1e-08 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1728, 3281
AarI CACCTGC 1 cut(s) 4076
AasI GACNNNNNNGTC 1 cut(s) 2842
Acc16I TGCGCA 1 cut(s) 1591
Acc36I ACCTGC 3 cut(s) 2723, 3154, 4076
AccB1I GGYRCC 2 cut(s) 1688, 3614
AccB7I CCANNNNNTGG 1 cut(s) 2950
AccI GTMKAC 1 cut(s) 1526
AccII CGCG 2 cut(s) 1583, 3735
AciI CCGC 8 cut(s) 1273, 1436, 2172, 2327, 3245, 3783, 3864, 3911
AclI AACGTT 1 cut(s) 866
AclWI GGATC 7 cut(s) 1370, 1446, 1945, 2065, 2547, 2619, 3489
AcoI YGGCCR 2 cut(s) 265, 1740
AcsI RAATTY 6 cut(s) 256, 1038, 1099, 1238, 1266, 2858
AcuI CTGAAG 6 cut(s) 108, 504, 1402, 2478, 3143, 3771
AcvI CACGTG 2 cut(s) 2270, 3698
AcyI GRCGYC 1 cut(s) 3615
AdeI CACNNNGTG 1 cut(s) 320
AfaI GTAC 2 cut(s) 574, 3476
AflII CTTAAG 1 cut(s) 2585
AflIII ACRYGT 4 cut(s) 1392, 1581, 3695, 3807
AhlI ACTAGT 1 cut(s) 176
AjuI GAANNNNNNNTTGG 4 cut(s) 1014, 1046, 3083, 3115
AleI CACNNNNGTG 1 cut(s) 1137
AloI GAACNNNNNNTCC 4 cut(s) 1911, 1943, 2469, 2501
Alw21I GWGCWC 1 cut(s) 1496
AlwI GGATC 7 cut(s) 1370, 1446, 1945, 2065, 2547, 2619, 3489
AlwNI CAGNNNCTG 2 cut(s) 382, 1625
Ama87I CYCGRG 3 cut(s) 1379, 3393, 3936
ApaI GGGCCC 1 cut(s) 4096
ApoI RAATTY 6 cut(s) 256, 1038, 1099, 1238, 1266, 2858
ArsI GACNNNNNNTTYG 4 cut(s) 675, 707, 2126, 2158
AseI ATTAAT 2 cut(s) 2481, 3459
Asp700I GAANNNNTTC 3 cut(s) 525, 3543, 3930
AspLEI GCGC 3 cut(s) 1592, 3617, 3735
AsuC2I CCSGG 3 cut(s) 2748, 3394, 3395
AsuHPI GGTGA 8 cut(s) 251, 293, 750, 1652, 2161, 2424, 3689, 3935
AsuII TTCGAA 1 cut(s) 1481
AvaI CYCGRG 3 cut(s) 1379, 3393, 3936
AvaII GGWCC 6 cut(s) 73, 691, 2113, 2514, 3304, 4036
AxyI CCTNAGG 1 cut(s) 1257
BaeGI GKGCMC 1 cut(s) 4096
BaeI ACNNNNGTAYC 2 cut(s) 57, 90
BalI TGGCCA 2 cut(s) 267, 1742
BanI GGYRCC 2 cut(s) 1688, 3614
BanII GRGCYC 3 cut(s) 562, 1285, 4096
BauI CACGAG 2 cut(s) 2037, 3966
BbrPI CACGTG 2 cut(s) 2270, 3698
BbsI GAAGAC 4 cut(s) 2222, 2290, 2786, 3725
Bbv12I GWGCWC 1 cut(s) 1496
BbvCI CCTCAGC 1 cut(s) 3105
BceAI ACGGC 1 cut(s) 660
BcnI CCSGG 3 cut(s) 2748, 3394, 3395
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 5 cut(s) 177, 332, 1505, 2709, 2901
BfmI CTRYAG 4 cut(s) 823, 2991, 3033, 3855
BfoI RGCGCY 1 cut(s) 3618
BfrI CTTAAG 1 cut(s) 2585
BfuAI ACCTGC 3 cut(s) 2723, 3154, 4076
BglII AGATCT 2 cut(s) 548, 2410
BlpI GCTNAGC 1 cut(s) 4234
Bme18I GGWCC 6 cut(s) 73, 691, 2113, 2514, 3304, 4036
BmeT110I CYCGRG 3 cut(s) 1379, 3393, 3936
BmrI ACTGGG 1 cut(s) 3683
BmuI ACTGGG 1 cut(s) 3683
BoxI GACNNNNGTC 1 cut(s) 3388
BpiI GAAGAC 4 cut(s) 2222, 2290, 2786, 3725
BplI GAGNNNNNCTC 4 cut(s) 570, 602, 2017, 2049
BpmI CTGGAG 6 cut(s) 209, 372, 690, 2805, 3255, 4197
Bpu10I CCTNAGC 5 cut(s) 273, 696, 2163, 3069, 3105
Bpu1102I GCTNAGC 1 cut(s) 4234
Bpu14I TTCGAA 1 cut(s) 1481
BpuEI CTTGAG 3 cut(s) 1463, 2101, 2617
BpuMI CCSGG 3 cut(s) 2748, 3394, 3395
BsaAI YACGTR 2 cut(s) 2270, 3698
BsaBI GATNNNNATC 1 cut(s) 1437
BsaHI GRCGYC 1 cut(s) 3615
BsaI GGTCTC 2 cut(s) 2070, 2077
BsaWI WCCGGW 3 cut(s) 30, 2086, 4033
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bse118I RCCGGY 2 cut(s) 1496, 3860
Bse21I CCTNAGG 1 cut(s) 1257
Bse3DI GCAATG 2 cut(s) 3222, 3398
Bse8I GATNNNNATC 1 cut(s) 1437
BseJI GATNNNNATC 1 cut(s) 1437
BseMI GCAATG 2 cut(s) 3222, 3398
BseRI GAGGAG 6 cut(s) 1232, 1245, 2025, 2345, 3695, 4055
BseSI GKGCMC 1 cut(s) 4096
BseYI CCCAGC 1 cut(s) 4162
BsgI GTGCAG 5 cut(s) 1044, 1947, 3948, 4101, 4224
Bsh1236I CGCG 2 cut(s) 1583, 3735
BshNI GGYRCC 2 cut(s) 1688, 3614
BsiHKAI GWGCWC 1 cut(s) 1496
BsiHKCI CYCGRG 3 cut(s) 1379, 3393, 3936
BsiSI CCGG 7 cut(s) 31, 1497, 2087, 2747, 3394, 3861, 4034
BslFI GGGAC 6 cut(s) 677, 910, 1700, 2527, 2778, 3376
BsmBI CGTCTC 1 cut(s) 635
BsmFI GGGAC 6 cut(s) 677, 910, 1700, 2527, 2778, 3376
BsmI GAATGC 7 cut(s) 124, 1604, 1794, 1979, 3754, 3784, 3839
Bso31I GGTCTC 2 cut(s) 2070, 2077
BsoBI CYCGRG 3 cut(s) 1379, 3393, 3936
Bsp119I TTCGAA 1 cut(s) 1481
Bsp120I GGGCCC 1 cut(s) 4092
Bsp1286I GDGCHC 4 cut(s) 562, 1285, 1496, 4096
Bsp1720I GCTNAGC 1 cut(s) 4234
Bsp19I CCATGG 2 cut(s) 1611, 2436
BspACI CCGC 8 cut(s) 1273, 1436, 2172, 2327, 3245, 3783, 3864, 3911
BspFNI CGCG 2 cut(s) 1583, 3735
BspHI TCATGA 2 cut(s) 2614, 4074
BspMAI CTGCAG 1 cut(s) 2995
BspMI ACCTGC 3 cut(s) 2723, 3154, 4076
BspPI GGATC 7 cut(s) 1370, 1446, 1945, 2065, 2547, 2619, 3489
BspQI GCTCTTC 1 cut(s) 3510
BspT104I TTCGAA 1 cut(s) 1481
BspT107I GGYRCC 2 cut(s) 1688, 3614
BspTI CTTAAG 1 cut(s) 2585
BspTNI GGTCTC 2 cut(s) 2070, 2077
BsrDI GCAATG 2 cut(s) 3222, 3398
BsrFI RCCGGY 2 cut(s) 1496, 3860
BssAI RCCGGY 2 cut(s) 1496, 3860
BssNI GRCGYC 1 cut(s) 3615
BssSI CACGAG 2 cut(s) 2037, 3966
BssT1I CCWWGG 5 cut(s) 516, 1611, 1692, 1881, 2436
Bst2BI CACGAG 2 cut(s) 2037, 3966
Bst4CI ACNGT 7 cut(s) 70, 163, 378, 1927, 2651, 2757, 4028
Bst6I CTCTTC 3 cut(s) 2795, 3510, 3936
BstACI GRCGYC 1 cut(s) 3615
BstAFI CTTAAG 1 cut(s) 2585
BstAPI GCANNNNNTGC 2 cut(s) 1160, 2468
BstBAI YACGTR 2 cut(s) 2270, 3698
BstBI TTCGAA 1 cut(s) 1481
BstC8I GCNNGC 8 cut(s) 265, 627, 1653, 2628, 2971, 3737, 3837, 3862
BstDSI CCRYGG 2 cut(s) 1611, 2436
BstEII GGTNACC 2 cut(s) 281, 2167
BstENI CCTNNNNNAGG 1 cut(s) 276
BstFNI CGCG 2 cut(s) 1583, 3735
BstH2I RGCGCY 1 cut(s) 3618
BstHHI GCGC 3 cut(s) 1592, 3617, 3735
BstNSI RCATGY 6 cut(s) 405, 417, 1396, 2825, 2912, 3811
BstPAI GACNNNNGTC 1 cut(s) 3388
BstPI GGTNACC 2 cut(s) 281, 2167
BstSFI CTRYAG 4 cut(s) 823, 2991, 3033, 3855
BstSLI GKGCMC 1 cut(s) 4096
BstUI CGCG 2 cut(s) 1583, 3735
BstV2I GAAGAC 4 cut(s) 2222, 2290, 2786, 3725
BstX2I RGATCY 7 cut(s) 548, 1438, 1937, 2057, 2410, 2539, 3481
BstXI CCANNNNNNTGG 4 cut(s) 1104, 1888, 2474, 3485
BstYI RGATCY 7 cut(s) 548, 1438, 1937, 2057, 2410, 2539, 3481
Bsu36I CCTNAGG 1 cut(s) 1257
BtgI CCRYGG 2 cut(s) 1611, 2436
BtgZI GCGATG 2 cut(s) 606, 2185
BtsI GCAGTG 2 cut(s) 3315, 3498
BtsIMutI CAGTG 8 cut(s) 1163, 1330, 2052, 2301, 3315, 3498, 4052, 4110
BveI ACCTGC 3 cut(s) 2723, 3154, 4076
Cac8I GCNNGC 8 cut(s) 265, 627, 1653, 2628, 2971, 3737, 3837, 3862
CaiI CAGNNNCTG 2 cut(s) 382, 1625
CciI TCATGA 2 cut(s) 2614, 4074
CfoI GCGC 3 cut(s) 1592, 3617, 3735
Cfr10I RCCGGY 2 cut(s) 1496, 3860
Cfr9I CCCGGG 1 cut(s) 3393
CseI GACGC 3 cut(s) 597, 1572, 1589
Csp6I GTAC 2 cut(s) 573, 3475
CviQI GTAC 2 cut(s) 573, 3475
DinI GGCGCC 1 cut(s) 3616
DraIII CACNNNGTG 1 cut(s) 320
DrdI GACNNNNNNGTC 1 cut(s) 2842
DseDI GACNNNNNNGTC 1 cut(s) 2842
EaeI YGGCCR 2 cut(s) 265, 1740
Eam1104I CTCTTC 3 cut(s) 2795, 3510, 3936
EarI CTCTTC 3 cut(s) 2795, 3510, 3936
Eco130I CCWWGG 5 cut(s) 516, 1611, 1692, 1881, 2436
Eco147I AGGCCT 1 cut(s) 3146
Eco24I GRGCYC 3 cut(s) 562, 1285, 4096
Eco31I GGTCTC 2 cut(s) 2070, 2077
Eco32I GATATC 1 cut(s) 3016
Eco47I GGWCC 6 cut(s) 73, 691, 2113, 2514, 3304, 4036
Eco57I CTGAAG 6 cut(s) 108, 504, 1402, 2478, 3143, 3771
Eco72I CACGTG 2 cut(s) 2270, 3698
Eco81I CCTNAGG 1 cut(s) 1257
Eco88I CYCGRG 3 cut(s) 1379, 3393, 3936
Eco91I GGTNACC 2 cut(s) 281, 2167
EcoNI CCTNNNNNAGG 1 cut(s) 276
EcoO109I RGGNCCY 5 cut(s) 691, 2113, 4006, 4092, 4093
EcoO65I GGTNACC 2 cut(s) 281, 2167
EcoRV GATATC 1 cut(s) 3016
EcoT14I CCWWGG 5 cut(s) 516, 1611, 1692, 1881, 2436
EcoT22I ATGCAT 4 cut(s) 1355, 2823, 2910, 3183
EcoT38I GRGCYC 3 cut(s) 562, 1285, 4096
EgeI GGCGCC 1 cut(s) 3616
EheI GGCGCC 1 cut(s) 3616
ErhI CCWWGG 5 cut(s) 516, 1611, 1692, 1881, 2436
Esp3I CGTCTC 1 cut(s) 635
FalI AAGNNNNNCTT 6 cut(s) 270, 302, 949, 981, 2579, 2611
FaqI GGGAC 6 cut(s) 677, 910, 1700, 2527, 2778, 3376
FauI CCCGC 3 cut(s) 1266, 3238, 3857
FauNDI CATATG 2 cut(s) 1464, 3387
FblI GTMKAC 1 cut(s) 1526
FriOI GRGCYC 3 cut(s) 562, 1285, 4096
FspBI CTAG 5 cut(s) 177, 332, 1505, 2709, 2901
FspI TGCGCA 1 cut(s) 1591
GlaI GCGC 3 cut(s) 1591, 3616, 3734
GsaI CCCAGC 1 cut(s) 4166
GsuI CTGGAG 6 cut(s) 209, 372, 690, 2805, 3255, 4197
HaeII RGCGCY 1 cut(s) 3618
HapII CCGG 7 cut(s) 31, 1497, 2087, 2747, 3394, 3861, 4034
HgaI GACGC 3 cut(s) 597, 1572, 1589
HhaI GCGC 3 cut(s) 1592, 3617, 3735
Hin1I GRCGYC 1 cut(s) 3615
Hin6I GCGC 3 cut(s) 1590, 3615, 3733
HinP1I GCGC 3 cut(s) 1590, 3615, 3733
HincII GTYRAC 4 cut(s) 174, 3892, 4022, 4208
HindII GTYRAC 4 cut(s) 174, 3892, 4022, 4208
HindIII AAGCTT 4 cut(s) 881, 1026, 3771, 4041
HpaII CCGG 7 cut(s) 31, 1497, 2087, 2747, 3394, 3861, 4034
HphI GGTGA 8 cut(s) 251, 293, 750, 1652, 2161, 2424, 3689, 3935
Hpy166II GTNNAC 6 cut(s) 174, 1402, 1527, 3892, 4022, 4208
Hpy8I GTNNAC 6 cut(s) 174, 1402, 1527, 3892, 4022, 4208
Hpy99I CGWCG 1 cut(s) 613
HpyCH4III ACNGT 7 cut(s) 70, 163, 378, 1927, 2651, 2757, 4028
HpyCH4IV ACGT 5 cut(s) 866, 1138, 2269, 3697, 4018
HpySE526I ACGT 5 cut(s) 866, 1138, 2269, 3697, 4018
Hsp92I GRCGYC 1 cut(s) 3615
HspAI GCGC 3 cut(s) 1590, 3615, 3733
KasI GGCGCC 1 cut(s) 3614
KroI GCCGGC 1 cut(s) 3860
KroNI GCCGGC 1 cut(s) 3862
LguI GCTCTTC 1 cut(s) 3510
MaeI CTAG 5 cut(s) 177, 332, 1505, 2709, 2901
MaeII ACGT 5 cut(s) 866, 1138, 2269, 3697, 4018
MfeI CAATTG 4 cut(s) 341, 1634, 2961, 3098
MflI RGATCY 7 cut(s) 548, 1438, 1937, 2057, 2410, 2539, 3481
MhlI GDGCHC 4 cut(s) 562, 1285, 1496, 4096
MlsI TGGCCA 2 cut(s) 267, 1742
MluI ACGCGT 1 cut(s) 1581
MluNI TGGCCA 2 cut(s) 267, 1742
Mly113I GGCGCC 1 cut(s) 3615
MlyI GAGTC 8 cut(s) 122, 137, 179, 658, 1811, 2830, 3695, 4051
MmeI TCCRAC 6 cut(s) 182, 817, 849, 1315, 1394, 3903
Mox20I TGGCCA 2 cut(s) 267, 1742
Mph1103I ATGCAT 4 cut(s) 1355, 2823, 2910, 3183
MroNI GCCGGC 1 cut(s) 3860
MroXI GAANNNNTTC 3 cut(s) 525, 3543, 3930
MscI TGGCCA 2 cut(s) 267, 1742
MslI CAYNNNNRTG 6 cut(s) 1137, 1395, 2472, 3327, 3438, 3636
Msp20I TGGCCA 2 cut(s) 267, 1742
MspA1I CMGCKG 5 cut(s) 263, 1450, 1622, 2174, 2252
MspCI CTTAAG 1 cut(s) 2585
MspI CCGG 7 cut(s) 31, 1497, 2087, 2747, 3394, 3861, 4034
MunI CAATTG 4 cut(s) 341, 1634, 2961, 3098
Mva1269I GAATGC 7 cut(s) 124, 1604, 1794, 1979, 3754, 3784, 3839
MvnI CGCG 2 cut(s) 1583, 3735
NaeI GCCGGC 1 cut(s) 3862
NarI GGCGCC 1 cut(s) 3615
NciI CCSGG 3 cut(s) 2748, 3394, 3395
NcoI CCATGG 2 cut(s) 1611, 2436
NdeI CATATG 2 cut(s) 1464, 3387
NgoMIV GCCGGC 1 cut(s) 3860
NmuCI GTSAC 7 cut(s) 39, 179, 281, 1294, 1577, 2167, 3698
NsbI TGCGCA 1 cut(s) 1591
NsiI ATGCAT 4 cut(s) 1355, 2823, 2910, 3183
NspI RCATGY 6 cut(s) 405, 417, 1396, 2825, 2912, 3811
NspV TTCGAA 1 cut(s) 1481
OliI CACNNNNGTG 1 cut(s) 1137
PagI TCATGA 2 cut(s) 2614, 4074
PaqCI CACCTGC 1 cut(s) 4076
PceI AGGCCT 1 cut(s) 3146
PciI ACATGT 2 cut(s) 1392, 3807
PciSI GCTCTTC 1 cut(s) 3510
PctI GAATGC 7 cut(s) 124, 1604, 1794, 1979, 3754, 3784, 3839
PdiI GCCGGC 1 cut(s) 3862
PdmI GAANNNNTTC 3 cut(s) 525, 3543, 3930
PfeI GAWTC 8 cut(s) 242, 356, 1616, 2264, 2921, 3022, 3686, 4100
PflMI CCANNNNNTGG 1 cut(s) 2950
PfoI TCCNGGA 2 cut(s) 667, 2746
PleI GAGTC 8 cut(s) 121, 136, 178, 658, 1811, 2830, 3695, 4051
PluTI GGCGCC 1 cut(s) 3618
PmaCI CACGTG 2 cut(s) 2270, 3698
PmlI CACGTG 2 cut(s) 2270, 3698
PpsI GAGTC 8 cut(s) 121, 136, 178, 658, 1811, 2830, 3695, 4051
Ppu21I YACGTR 2 cut(s) 2270, 3698
PpuMI RGGWCCY 2 cut(s) 691, 2113
PscI ACATGT 2 cut(s) 1392, 3807
PshAI GACNNNNGTC 1 cut(s) 3388
PshBI ATTAAT 2 cut(s) 2481, 3459
PsiI TTATAA 2 cut(s) 1728, 3281
Psp1406I AACGTT 1 cut(s) 866
Psp5II RGGWCCY 2 cut(s) 691, 2113
PspCI CACGTG 2 cut(s) 2270, 3698
PspEI GGTNACC 2 cut(s) 281, 2167
PspFI CCCAGC 1 cut(s) 4162
PspOMI GGGCCC 1 cut(s) 4092
PspPPI RGGWCCY 2 cut(s) 691, 2113
PsrI GAACNNNNNNTAC 2 cut(s) 3363, 3395
PstI CTGCAG 1 cut(s) 2995
PstNI CAGNNNCTG 2 cut(s) 382, 1625
PsuI RGATCY 7 cut(s) 548, 1438, 1937, 2057, 2410, 2539, 3481
PvuII CAGCTG 4 cut(s) 263, 1450, 1622, 2252
RsaI GTAC 2 cut(s) 574, 3476
RsaNI GTAC 2 cut(s) 573, 3475
RseI CAYNNNNRTG 6 cut(s) 1137, 1395, 2472, 3327, 3438, 3636
SapI GCTCTTC 1 cut(s) 3510
SchI GAGTC 8 cut(s) 122, 137, 179, 658, 1811, 2830, 3695, 4051
SduI GDGCHC 4 cut(s) 562, 1285, 1496, 4096
SfcI CTRYAG 4 cut(s) 823, 2991, 3033, 3855
SfoI GGCGCC 1 cut(s) 3616
SfuI TTCGAA 1 cut(s) 1481
SinI GGWCC 6 cut(s) 73, 691, 2113, 2514, 3304, 4036
SmaI CCCGGG 1 cut(s) 3395
SmiMI CAYNNNNRTG 6 cut(s) 1137, 1395, 2472, 3327, 3438, 3636
SmlI CTYRAG 4 cut(s) 1442, 2080, 2585, 2596
SmoI CTYRAG 4 cut(s) 1442, 2080, 2585, 2596
SpeI ACTAGT 1 cut(s) 176
SseBI AGGCCT 1 cut(s) 3146
SsiI CCGC 8 cut(s) 1273, 1436, 2172, 2327, 3245, 3783, 3864, 3911
SspDI GGCGCC 1 cut(s) 3614
SspMI CTAG 5 cut(s) 177, 332, 1505, 2709, 2901
StuI AGGCCT 1 cut(s) 3146
StyI CCWWGG 5 cut(s) 516, 1611, 1692, 1881, 2436
TaaI ACNGT 7 cut(s) 70, 163, 378, 1927, 2651, 2757, 4028
TaiI ACGT 5 cut(s) 869, 1141, 2272, 3700, 4021
TaqI TCGA 9 cut(s) 116, 225, 1481, 1971, 2068, 3508, 3689, 3804, 4265
TauI GCSGC 2 cut(s) 3785, 3914
TfiI GAWTC 8 cut(s) 242, 356, 1616, 2264, 2921, 3022, 3686, 4100
TscAI CASTG 8 cut(s) 1170, 1330, 2059, 2308, 3322, 3505, 4059, 4110
TseFI GTSAC 7 cut(s) 39, 179, 281, 1294, 1577, 2167, 3698
Tsp45I GTSAC 7 cut(s) 39, 179, 281, 1294, 1577, 2167, 3698
TspGWI ACGGA 3 cut(s) 121, 919, 2921
TspMI CCCGGG 1 cut(s) 3393
TspRI CASTG 8 cut(s) 1170, 1330, 2059, 2308, 3322, 3505, 4059, 4110
Van91I CCANNNNNTGG 1 cut(s) 2950
Vha464I CTTAAG 1 cut(s) 2585
VpaK11BI GGWCC 6 cut(s) 73, 691, 2113, 2514, 3304, 4036
VspI ATTAAT 2 cut(s) 2481, 3459
XagI CCTNNNNNAGG 1 cut(s) 276
XapI RAATTY 6 cut(s) 256, 1038, 1099, 1238, 1266, 2858
XbaI TCTAGA 1 cut(s) 2708
XceI RCATGY 6 cut(s) 405, 417, 1396, 2825, 2912, 3811
XcmI CCANNNNNNNNNTGG 3 cut(s) 1101, 1483, 4154
XmaI CCCGGG 1 cut(s) 3393
XmiI GTMKAC 1 cut(s) 1526
XmnI GAANNNNTTC 3 cut(s) 525, 3543, 3930
XspI CTAG 5 cut(s) 177, 332, 1505, 2709, 2901
Zsp2I ATGCAT 4 cut(s) 1355, 2823, 2910, 3183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.