RchiOBHm_Chr4g0410621

mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005851
Physical Location & Seq
Forward (+)
34393924 .. 34407352
13429 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38151

Sequence Viewer

Length: 4287 bp
ATGGCTGGAAAATCGAACAAAGGGAGGAACCGGAGAGGATCACATAATGCTGCAAGTTCGTCTGATTCGGCGGTCCAGTCTGATGCTCCTGTGAAAGACAACTCAAAAGATGAGTCGAGTGCTTCAGAGTCTGTCAAGGCCAATGCTAATGGTGTTCCAACTGTGCAAGAGTCAACTAGTGACAAGCTGGAGGTAAAGGATTCTGAAACTAATGTTGCAGTCGTCGAACCAAAGCAAGGTGAATCTGAAACTGAAAATTCAGCTGGCCAACCTAAGCAAGGTGACCTTCATCTTTACCCTGTCTCTGTCAAGACACAAGGTGGCGAGAAGCTAGAACTACAATTGAACCCAGGAGATTCTGTTATGGATATAAGACAGTTTCTGCTTGATGCTCCTGAGACATGCTTCTTTACATGCTATGACTTGTTGCTACACACCAAAGATGGCTCAACCTATCATTTGGAAGATTTTAATGAAATCTCTGAAGTTGCTGACATTACTATTGGTGGATGCTCCTTGGAAATGGTTCCAGCTTTATATGATGATAGATCTATAAGGGCTCATGTTCATCGTACCAGAGAATTACTTTCACTTTCCACACTTCATGCGTCGCTATCAACATCGCTTGCATTACAATATGAGACAGCTCAGAACAAAGTAGCAACTCCTGGAGATACCATCAAAACTGAGGTCCCTGAGCTTGATGGTTTGGGTTTTATGGAGGATGTTGCTGGTGCATTGAGTAATTTGCTCTCATCACCCTCAAATGAGATCAAATGCGTAGAGAGTATTGTGTTTTCATCCTTCAATCCTCCACCAAGCTATAGAAGGCTGGTCGGAGATTTGATTTATCTGGATGTCGTAACGTTGGAGGGTAATAAGCTTTGTATTACGGGGACTACAAAAATGTTTTATGTCAATTCAAGCTCCGTAAATAATACCCTTAATCCCAGGCCAAGCAAAAGTTATCCAGAAGCGACCACACTTGTCGGGATTTTGCAAAAGATCAGCTCTAAGTTCCAAAAAGCTTTTCGTGAAATTTTGGAGCGGAGAGCTTCTGCACATCCTTTTGAAAACGTGCAATCTCTGTTACCACCAAATTCGTGGTTAGGGTTACATCCAGTTCCAGATCACAAACGTGATGCAGCCAGAGCAGAGGATGCACTGACCCTCTCTTATGGTAGTGAGCTAATTGGTATGCAAAGGGATTGGAATGAGGAGTTGCAATCTTGTAGGGAATTTCCACATACAACTCCTCAGGAAAGAATTTTGCGGGATAGGGCTCTCTACAAAGTGACATCAGACTTCGTGGATGCAGCAATCAGTGGTGCTGTTGGAGTTATCAGCAGATGCATACCACCTATAAATCCAACTGATCCCGAGTGCTTCCACATGTATGTTCACAATAACATCTTCTTCAGTTTCGCTGTTGATGCGGATCTTGAGCAGCTGTCTAAGAACCATATGTCAGTTTCCAATTCGAAAATGGGGAGCACCGGCTCTCTAGGCAGTTCTTCTGAAAAGTCTACTGGCAGTTTGTTGCATAGAGAGAGTGAAATCCCCAATGGGGAAAAATGTGACGCGTCATGCGCAGGGGAATGCCACGATGCCATGGAATCAGCTGCTGAGACACAATTGGGTGAGACTGAGCAGGCTACTTATGCTTCTGCAAATAATGATTTGAAAGGCACCAAGGCATACCAGGAAGCTGATGTCCCTGGACTTTATAATCTTGCTATGGCCATAATTGATTACAGAGGCCATAGAGTAGTAGCTCAGAGTGTTTTGCCAGGCATTCTTCAAGGGGATAAATCAGACTCTCTTTTATATGGTTCTGTTGATAATGGGAAAAAGATATGCTGGAATGAGGATTTTCATTCCAAGGTGGTGGAGGCTGCTAAACGCCTTCATTTGAAAGAACACACAGTCCTTGATGGATCTGGAAATGTTTTCAAGTTAGCTGCACCAGTTGAATGCAAGGGTATTGTTGGTAGTGATGACAGGCATTATCTTCTTGACTTGATGAGAGTAACTCCTCGTGATGCAAACTTCACTGGATCTGGGTCTCGATTTTGTATCTTGAGACCAGAACTAATTACTTCCTATTGCCAGGTCCTTGATGCAGAGAAATCAAAATCTAAGTCTAAATGTGAAGGAGAGGCTCAGGTCACCGCTGATGGGCCAAACGATAACCAGGACATCGCAGAAAAAGAGAAGACCATTGATGCACAAGAAATTGTCTCACCACCAGCTGAAAGCTCTGAATCACGTGAGGAAACTCTTTTCAACCCTAATGTCTTCACTGAGTTTAAGTTGGCTGGAAATGCGGAGGAGATAGCAACAGATGAAGAAAATGTGAGGAAAGCCAGTTTGTATCTTACTGAGGTTGTTCTTCCGAAGTTCATACAAGATCTTTGCACACTTGAAGTATCACCCATGGATGGGCAGACACTAACTGAAGCACTCCATGCTCATGGAATTAATGTTCGTTATATTGGAAAAGTGGCTGATGGGACCAGGCATTTACCTCATCTTTGGGATCTTTGTTCTAATGAGATTGTGGTTAGATCAGCCAAGCACATTCTTAAGGATGTCTTAAGAGATACAGAGGATCATGATATTGGGCCTGCAATCTGCCATTTCTTCAACTGTTTTTTCGGAAGCTATCAAGCTGTTGGCTCAAAAGTCGCTGCTAATAGTTCTCAGTCTAGAACCCCCAAAAAGGAACAAGCAGGTCATCAATCTCCGGGAAAACGGTCAAAGGGACAAGGAAGATGGAAGGCTGGAGCTTCTACAAGGAAGAGTGTATCTTCATATATGCATGTTAGCTCAGAGACTCTATGGTCTGACATTCAAGAATTTGCCAAACTCAAATATGAGTTTGAGTTGCCAAAGGATGCTAGGATGCATGTAAAGAAAGATTCGGTTATCCGTAATCTTTGCCAAAAGGTGGGCATTACAATTGCAGCTCGCAGATATGATCTGAAATCTGCAGCACCTTTTGAAATATCAGATATCTTGAATCTTCAACCTGTAGTGAAACACTCTGTTCCTGTTTGTTCAGAAGCTAAGGATCTTGTGGAAACAGGGAAAATCCAATTGGCTGAGGGAATGTTGAGTGAAGCCTACACATTATTTTCCGAGGCCTTTTCCATACTTCAGCAGGTTACAGGCCCAATGCATCGGGAGGTTGCTAACTGCTGTCGGTATCTTGCAATGGTTCTGTATCATGCTGGAGACATGGCGGGAGCCATAATGCAACAGCACAAGGAGCTAATTATAAACGAGCGTTGCCTGGGTTTGGACCACCCTGACACTGCTCACAGCTATGGGAATATGGCTCTTTTCTATCATGGACTTAACCAAACAGAACTCGCCTTACGACATATGTCCCGGGCGTTGCTCCTGTTAAGTTTGTCATCTGGCCCAGATCATCCTGATGTCGCAGCAACATTCATTAATGTTGCTATGATGTACCAGGATCTTGGGAAGATGGACACTGCTCTTCGATATTTGCAAGAGGCTTTGAAAAAGAATGAAAGGCTTCTGGGCGAGGAACATATCCAAACTGCTGTATGCTATCATGCACTTGCTATTGCATTTAATTGTATGGGCGCCTTCAAGCTCTCCCACCAGCATGAGAAGAAAACTTATGATATACTTGTCAAACAACTGGGTGAGGAGGATTCGAGGACACGTGACTCTCAAAACTGGATGAAGACATTTAAGTTGCGCGAGCAACAGATGAATGCACAAAAGCAAAAAGGTCAAGCTTTGAATGCCGCTTCAGCTCAAAAGGCAATCGACATGTTAAAGGCCAATCCTGACTTGATGCAGGCATTCCAATCTGCTGCTATAGCCGGCGGGTCTGGGAGTTCCAACACTTCTGTCAACAAATCTCTTAATGCTGCTGCAATAATGGGTGAAACTCTTCCCCGAGGGAGGGGAGTTGATGAGAGGGCTGCACGAGCAACAGCCGAAATCAGGAAGAAGGCAGCAGCGAGAGGCCTCTTAATACGTCAACATGGTGTTCCGGTCCAAGCTTTGCCTCCACTGACTCATCTCCTCAATATCATGAGTGCAGCAGGTGGGGCCCCAGATTCAGTGGAAAATGGAGAAACCACTGCGGCGAAGGAAGGCAACAACCATCCTTCAAATGGCCCAGCAGATGCGAAAACTAACCAACCATCATTAGAGCCGGAAGGTCAACCTCCAGTTGGGTTGGGCAGAGGCTTAGCTGCACTTGATGGCAAGAAACAAAAGTCGAAAGCCAAAGCTGCATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU CLU_N DUF727 TPR_10 TPR_12 eIF3_p135

Protein Analysis

1428

Amino Acids

155.91

Weight (kDa)

5.9

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLU_N PF15044 119 - 195 4.7e-14 Mitochondrial function, CLU-N-term
CLU PF13236 403 - 684 1.6e-74 Clustered mitochondria
eIF3_p135 PF12807 810 - 994 5.4e-48 Translation initiation factor eIF3 subunit 135
TPR_12 PF13424 1071 - 1134 1.2e-08 Tetratricopeptide repeat
TPR_NPHP3 PF24885 1107 - 1228 1.6e-12 Nephrocystin-3 TPR domain
TPR_12 PF13424 1110 - 1177 1.1e-11 Tetratricopeptide repeat
TPR_12 PF13424 1147 - 1220 6.2e-14 Tetratricopeptide repeat
TPR_10 PF13374 1148 - 1188 1.1e-08 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1728, 3281
AarI CACCTGC 1 cut(s) 4076
AasI GACNNNNNNGTC 1 cut(s) 2842
Acc16I TGCGCA 1 cut(s) 1591
Acc36I ACCTGC 3 cut(s) 2723, 3154, 4076
AccB1I GGYRCC 2 cut(s) 1688, 3614
AccB7I CCANNNNNTGG 1 cut(s) 2950
AccBSI CCGCTC 1 cut(s) 1048
AccI GTMKAC 1 cut(s) 1526
AccII CGCG 2 cut(s) 1583, 3735
AclI AACGTT 1 cut(s) 866
AclWI GGATC 9 cut(s) 46, 1370, 1446, 1945, 2065, 2547, 2619, 3081, 3489
AcoI YGGCCR 2 cut(s) 265, 1740
AcsI RAATTY 6 cut(s) 256, 1038, 1099, 1238, 1266, 2858
AcuI CTGAAG 6 cut(s) 108, 504, 1402, 2478, 3143, 3771
AcvI CACGTG 2 cut(s) 2270, 3698
AcyI GRCGYC 1 cut(s) 3615
AdeI CACNNNGTG 1 cut(s) 320
AfaI GTAC 2 cut(s) 574, 3476
AflII CTTAAG 2 cut(s) 2585, 2596
AflIII ACRYGT 4 cut(s) 1392, 1581, 3695, 3807
AhlI ACTAGT 1 cut(s) 176
AjuI GAANNNNNNNTTGG 4 cut(s) 1014, 1046, 3083, 3115
AleI CACNNNNGTG 1 cut(s) 1137
AloI GAACNNNNNNTCC 4 cut(s) 1911, 1943, 2469, 2501
Alw21I GWGCWC 1 cut(s) 1496
AlwI GGATC 9 cut(s) 46, 1370, 1446, 1945, 2065, 2547, 2619, 3081, 3489
AlwNI CAGNNNCTG 3 cut(s) 131, 382, 1625
Ama87I CYCGRG 3 cut(s) 1379, 3393, 3936
ApaI GGGCCC 1 cut(s) 4096
ApoI RAATTY 6 cut(s) 256, 1038, 1099, 1238, 1266, 2858
ArsI GACNNNNNNTTYG 6 cut(s) 98, 130, 675, 707, 2126, 2158
AseI ATTAAT 2 cut(s) 2481, 3459
Asp700I GAANNNNTTC 3 cut(s) 525, 3543, 3930
AspLEI GCGC 3 cut(s) 1592, 3617, 3735
AsuC2I CCSGG 3 cut(s) 2748, 3394, 3395
AsuHPI GGTGA 9 cut(s) 251, 293, 750, 1652, 2161, 2235, 2424, 3689, 3935
AsuII TTCGAA 1 cut(s) 1481
AvaI CYCGRG 3 cut(s) 1379, 3393, 3936
AvaII GGWCC 6 cut(s) 73, 691, 2113, 2514, 3304, 4036
AxyI CCTNAGG 1 cut(s) 1257
BaeGI GKGCMC 1 cut(s) 4096
BalI TGGCCA 2 cut(s) 267, 1742
BanI GGYRCC 2 cut(s) 1688, 3614
BanII GRGCYC 3 cut(s) 562, 1285, 4096
BauI CACGAG 2 cut(s) 2037, 3966
BbrPI CACGTG 2 cut(s) 2270, 3698
BbsI GAAGAC 3 cut(s) 2222, 2290, 3725
Bbv12I GWGCWC 1 cut(s) 1496
BbvCI CCTCAGC 1 cut(s) 3105
BcnI CCSGG 3 cut(s) 2748, 3394, 3395
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 5 cut(s) 177, 332, 1505, 2709, 2901
BfmI CTRYAG 4 cut(s) 823, 2991, 3033, 3855
BfoI RGCGCY 1 cut(s) 3618
BfrI CTTAAG 2 cut(s) 2585, 2596
BfuAI ACCTGC 3 cut(s) 2723, 3154, 4076
BglII AGATCT 2 cut(s) 548, 2410
BlpI GCTNAGC 1 cut(s) 4234
Bme18I GGWCC 6 cut(s) 73, 691, 2113, 2514, 3304, 4036
BmeT110I CYCGRG 3 cut(s) 1379, 3393, 3936
BmrI ACTGGG 1 cut(s) 3683
BmuI ACTGGG 1 cut(s) 3683
BoxI GACNNNNGTC 1 cut(s) 3388
BpiI GAAGAC 3 cut(s) 2222, 2290, 3725
BplI GAGNNNNNCTC 2 cut(s) 2017, 2049
BpmI CTGGAG 5 cut(s) 209, 690, 2805, 3255, 4197
Bpu10I CCTNAGC 5 cut(s) 273, 696, 2163, 3069, 3105
Bpu1102I GCTNAGC 1 cut(s) 4234
Bpu14I TTCGAA 1 cut(s) 1481
BpuEI CTTGAG 2 cut(s) 1463, 2101
BpuMI CCSGG 3 cut(s) 2748, 3394, 3395
BsaAI YACGTR 2 cut(s) 2270, 3698
BsaBI GATNNNNATC 1 cut(s) 1437
BsaHI GRCGYC 1 cut(s) 3615
BsaI GGTCTC 2 cut(s) 2070, 2077
BsaWI WCCGGW 2 cut(s) 30, 4033
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bse118I RCCGGY 2 cut(s) 1496, 3860
Bse1I ACTGG 9 cut(s) 76, 1121, 1534, 1967, 2059, 2367, 3678, 3716, 4214
Bse21I CCTNAGG 1 cut(s) 1257
Bse3DI GCAATG 1 cut(s) 3222
Bse8I GATNNNNATC 1 cut(s) 1437
BseJI GATNNNNATC 1 cut(s) 1437
BseMI GCAATG 1 cut(s) 3222
BseNI ACTGG 9 cut(s) 76, 1121, 1534, 1967, 2059, 2367, 3678, 3716, 4214
BseRI GAGGAG 6 cut(s) 1232, 1245, 2025, 2345, 3695, 4055
BseSI GKGCMC 1 cut(s) 4096
BseYI CCCAGC 1 cut(s) 4162
BsgI GTGCAG 5 cut(s) 1044, 1947, 3948, 4101, 4224
Bsh1236I CGCG 2 cut(s) 1583, 3735
BshNI GGYRCC 2 cut(s) 1688, 3614
BsiHKAI GWGCWC 1 cut(s) 1496
BsiHKCI CYCGRG 3 cut(s) 1379, 3393, 3936
BsiSI CCGG 7 cut(s) 31, 1497, 2747, 3394, 3861, 4034, 4199
BslFI GGGAC 6 cut(s) 677, 910, 1700, 2527, 2778, 3376
BsmFI GGGAC 6 cut(s) 677, 910, 1700, 2527, 2778, 3376
BsmI GAATGC 6 cut(s) 1604, 1794, 1979, 3754, 3784, 3839
Bso31I GGTCTC 2 cut(s) 2070, 2077
BsoBI CYCGRG 3 cut(s) 1379, 3393, 3936
Bsp119I TTCGAA 1 cut(s) 1481
Bsp120I GGGCCC 1 cut(s) 4092
Bsp1286I GDGCHC 4 cut(s) 562, 1285, 1496, 4096
Bsp1720I GCTNAGC 1 cut(s) 4234
Bsp19I CCATGG 2 cut(s) 1611, 2436
BspFNI CGCG 2 cut(s) 1583, 3735
BspHI TCATGA 2 cut(s) 2614, 4074
BspMAI CTGCAG 1 cut(s) 2995
BspMI ACCTGC 3 cut(s) 2723, 3154, 4076
BspPI GGATC 9 cut(s) 46, 1370, 1446, 1945, 2065, 2547, 2619, 3081, 3489
BspQI GCTCTTC 1 cut(s) 3510
BspT104I TTCGAA 1 cut(s) 1481
BspT107I GGYRCC 2 cut(s) 1688, 3614
BspTI CTTAAG 2 cut(s) 2585, 2596
BspTNI GGTCTC 2 cut(s) 2070, 2077
BsrBI CCGCTC 1 cut(s) 1048
BsrDI GCAATG 1 cut(s) 3222
BsrFI RCCGGY 2 cut(s) 1496, 3860
BsrI ACTGG 9 cut(s) 76, 1121, 1534, 1967, 2059, 2367, 3678, 3716, 4214
BssAI RCCGGY 2 cut(s) 1496, 3860
BssNI GRCGYC 1 cut(s) 3615
BssSI CACGAG 2 cut(s) 2037, 3966
BssT1I CCWWGG 5 cut(s) 516, 1611, 1692, 1881, 2436
Bst2BI CACGAG 2 cut(s) 2037, 3966
Bst4CI ACNGT 5 cut(s) 163, 378, 1927, 2651, 2757
Bst6I CTCTTC 3 cut(s) 2795, 3510, 3936
BstACI GRCGYC 1 cut(s) 3615
BstAFI CTTAAG 2 cut(s) 2585, 2596
BstAPI GCANNNNNTGC 2 cut(s) 1160, 2468
BstBAI YACGTR 2 cut(s) 2270, 3698
BstBI TTCGAA 1 cut(s) 1481
BstC8I GCNNGC 8 cut(s) 265, 627, 1653, 2628, 2971, 3737, 3837, 3862
BstDSI CCRYGG 2 cut(s) 1611, 2436
BstEII GGTNACC 2 cut(s) 281, 2167
BstENI CCTNNNNNAGG 1 cut(s) 276
BstFNI CGCG 2 cut(s) 1583, 3735
BstH2I RGCGCY 1 cut(s) 3618
BstHHI GCGC 3 cut(s) 1592, 3617, 3735
BstNSI RCATGY 6 cut(s) 405, 417, 1396, 2825, 2912, 3811
BstPAI GACNNNNGTC 1 cut(s) 3388
BstPI GGTNACC 2 cut(s) 281, 2167
BstSFI CTRYAG 4 cut(s) 823, 2991, 3033, 3855
BstSLI GKGCMC 1 cut(s) 4096
BstUI CGCG 2 cut(s) 1583, 3735
BstV2I GAAGAC 3 cut(s) 2222, 2290, 3725
BstX2I RGATCY 8 cut(s) 548, 1438, 1937, 2057, 2410, 2539, 3073, 3481
BstXI CCANNNNNNTGG 4 cut(s) 1104, 1888, 2474, 3485
BstYI RGATCY 8 cut(s) 548, 1438, 1937, 2057, 2410, 2539, 3073, 3481
Bsu36I CCTNAGG 1 cut(s) 1257
BtgI CCRYGG 2 cut(s) 1611, 2436
BtgZI GCGATG 2 cut(s) 606, 2185
BtsI GCAGTG 3 cut(s) 3315, 3498, 4122
BtsIMutI CAGTG 9 cut(s) 1163, 1330, 2052, 2301, 3315, 3498, 4052, 4110, 4122
BveI ACCTGC 3 cut(s) 2723, 3154, 4076
Cac8I GCNNGC 8 cut(s) 265, 627, 1653, 2628, 2971, 3737, 3837, 3862
CaiI CAGNNNCTG 3 cut(s) 131, 382, 1625
CciI TCATGA 2 cut(s) 2614, 4074
CfoI GCGC 3 cut(s) 1592, 3617, 3735
Cfr10I RCCGGY 2 cut(s) 1496, 3860
Cfr9I CCCGGG 1 cut(s) 3393
CseI GACGC 3 cut(s) 597, 1572, 1589
Csp6I GTAC 2 cut(s) 573, 3475
CviQI GTAC 2 cut(s) 573, 3475
DinI GGCGCC 1 cut(s) 3616
DraIII CACNNNGTG 1 cut(s) 320
DrdI GACNNNNNNGTC 1 cut(s) 2842
DseDI GACNNNNNNGTC 1 cut(s) 2842
EaeI YGGCCR 2 cut(s) 265, 1740
Eam1104I CTCTTC 3 cut(s) 2795, 3510, 3936
EarI CTCTTC 3 cut(s) 2795, 3510, 3936
Eco130I CCWWGG 5 cut(s) 516, 1611, 1692, 1881, 2436
Eco147I AGGCCT 2 cut(s) 3146, 4008
Eco24I GRGCYC 3 cut(s) 562, 1285, 4096
Eco31I GGTCTC 2 cut(s) 2070, 2077
Eco32I GATATC 1 cut(s) 3016
Eco47I GGWCC 6 cut(s) 73, 691, 2113, 2514, 3304, 4036
Eco57I CTGAAG 6 cut(s) 108, 504, 1402, 2478, 3143, 3771
Eco72I CACGTG 2 cut(s) 2270, 3698
Eco81I CCTNAGG 1 cut(s) 1257
Eco88I CYCGRG 3 cut(s) 1379, 3393, 3936
Eco91I GGTNACC 2 cut(s) 281, 2167
EcoNI CCTNNNNNAGG 1 cut(s) 276
EcoO109I RGGNCCY 4 cut(s) 691, 2113, 4092, 4093
EcoO65I GGTNACC 2 cut(s) 281, 2167
EcoRV GATATC 1 cut(s) 3016
EcoT14I CCWWGG 5 cut(s) 516, 1611, 1692, 1881, 2436
EcoT22I ATGCAT 4 cut(s) 1355, 2823, 2910, 3183
EcoT38I GRGCYC 3 cut(s) 562, 1285, 4096
EgeI GGCGCC 1 cut(s) 3616
EheI GGCGCC 1 cut(s) 3616
ErhI CCWWGG 5 cut(s) 516, 1611, 1692, 1881, 2436
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 2579, 2611
FaqI GGGAC 6 cut(s) 677, 910, 1700, 2527, 2778, 3376
FauI CCCGC 3 cut(s) 1266, 3238, 3857
FauNDI CATATG 2 cut(s) 1464, 3387
FblI GTMKAC 1 cut(s) 1526
FriOI GRGCYC 3 cut(s) 562, 1285, 4096
FspBI CTAG 5 cut(s) 177, 332, 1505, 2709, 2901
FspI TGCGCA 1 cut(s) 1591
GlaI GCGC 3 cut(s) 1591, 3616, 3734
GsaI CCCAGC 1 cut(s) 4166
GsuI CTGGAG 5 cut(s) 209, 690, 2805, 3255, 4197
HaeII RGCGCY 1 cut(s) 3618
HapII CCGG 7 cut(s) 31, 1497, 2747, 3394, 3861, 4034, 4199
HgaI GACGC 3 cut(s) 597, 1572, 1589
HhaI GCGC 3 cut(s) 1592, 3617, 3735
Hin1I GRCGYC 1 cut(s) 3615
Hin6I GCGC 3 cut(s) 1590, 3615, 3733
HinP1I GCGC 3 cut(s) 1590, 3615, 3733
HincII GTYRAC 4 cut(s) 174, 3892, 4022, 4208
HindII GTYRAC 4 cut(s) 174, 3892, 4022, 4208
HindIII AAGCTT 4 cut(s) 881, 1026, 3771, 4041
HpaII CCGG 7 cut(s) 31, 1497, 2747, 3394, 3861, 4034, 4199
HphI GGTGA 9 cut(s) 251, 293, 750, 1652, 2161, 2235, 2424, 3689, 3935
Hpy166II GTNNAC 6 cut(s) 174, 1402, 1527, 3892, 4022, 4208
Hpy8I GTNNAC 6 cut(s) 174, 1402, 1527, 3892, 4022, 4208
Hpy99I CGWCG 2 cut(s) 227, 613
HpyCH4III ACNGT 5 cut(s) 163, 378, 1927, 2651, 2757
HpyCH4IV ACGT 6 cut(s) 866, 1077, 1138, 2269, 3697, 4018
HpySE526I ACGT 6 cut(s) 866, 1077, 1138, 2269, 3697, 4018
Hsp92I GRCGYC 1 cut(s) 3615
HspAI GCGC 3 cut(s) 1590, 3615, 3733
KasI GGCGCC 1 cut(s) 3614
KroI GCCGGC 1 cut(s) 3860
KroNI GCCGGC 1 cut(s) 3862
LguI GCTCTTC 1 cut(s) 3510
MaeI CTAG 5 cut(s) 177, 332, 1505, 2709, 2901
MaeII ACGT 6 cut(s) 866, 1077, 1138, 2269, 3697, 4018
MbiI CCGCTC 1 cut(s) 1048
MfeI CAATTG 4 cut(s) 341, 1634, 2961, 3098
MflI RGATCY 8 cut(s) 548, 1438, 1937, 2057, 2410, 2539, 3073, 3481
MhlI GDGCHC 4 cut(s) 562, 1285, 1496, 4096
MlsI TGGCCA 2 cut(s) 267, 1742
MluI ACGCGT 1 cut(s) 1581
MluNI TGGCCA 2 cut(s) 267, 1742
Mly113I GGCGCC 1 cut(s) 3615
MlyI GAGTC 7 cut(s) 122, 137, 179, 1811, 2830, 3695, 4051
MmeI TCCRAC 6 cut(s) 182, 817, 849, 1315, 1394, 3903
Mox20I TGGCCA 2 cut(s) 267, 1742
Mph1103I ATGCAT 4 cut(s) 1355, 2823, 2910, 3183
MroNI GCCGGC 1 cut(s) 3860
MroXI GAANNNNTTC 3 cut(s) 525, 3543, 3930
MscI TGGCCA 2 cut(s) 267, 1742
MslI CAYNNNNRTG 6 cut(s) 1137, 1395, 2472, 3327, 3438, 3636
Msp20I TGGCCA 2 cut(s) 267, 1742
MspA1I CMGCKG 5 cut(s) 263, 1450, 1622, 2174, 2252
MspCI CTTAAG 2 cut(s) 2585, 2596
MspI CCGG 7 cut(s) 31, 1497, 2747, 3394, 3861, 4034, 4199
MunI CAATTG 4 cut(s) 341, 1634, 2961, 3098
Mva1269I GAATGC 6 cut(s) 1604, 1794, 1979, 3754, 3784, 3839
MvnI CGCG 2 cut(s) 1583, 3735
NaeI GCCGGC 1 cut(s) 3862
NarI GGCGCC 1 cut(s) 3615
NciI CCSGG 3 cut(s) 2748, 3394, 3395
NcoI CCATGG 2 cut(s) 1611, 2436
NdeI CATATG 2 cut(s) 1464, 3387
NgoMIV GCCGGC 1 cut(s) 3860
NmuCI GTSAC 6 cut(s) 179, 281, 1294, 1577, 2167, 3698
NsbI TGCGCA 1 cut(s) 1591
NsiI ATGCAT 4 cut(s) 1355, 2823, 2910, 3183
NspI RCATGY 6 cut(s) 405, 417, 1396, 2825, 2912, 3811
NspV TTCGAA 1 cut(s) 1481
OliI CACNNNNGTG 1 cut(s) 1137
PagI TCATGA 2 cut(s) 2614, 4074
PaqCI CACCTGC 1 cut(s) 4076
PceI AGGCCT 2 cut(s) 3146, 4008
PciI ACATGT 2 cut(s) 1392, 3807
PciSI GCTCTTC 1 cut(s) 3510
PctI GAATGC 6 cut(s) 1604, 1794, 1979, 3754, 3784, 3839
PdiI GCCGGC 1 cut(s) 3862
PdmI GAANNNNTTC 3 cut(s) 525, 3543, 3930
PflMI CCANNNNNTGG 1 cut(s) 2950
PfoI TCCNGGA 2 cut(s) 667, 2746
PleI GAGTC 7 cut(s) 121, 136, 178, 1811, 2830, 3695, 4051
PluTI GGCGCC 1 cut(s) 3618
PmaCI CACGTG 2 cut(s) 2270, 3698
PmlI CACGTG 2 cut(s) 2270, 3698
PpsI GAGTC 7 cut(s) 121, 136, 178, 1811, 2830, 3695, 4051
Ppu21I YACGTR 2 cut(s) 2270, 3698
PpuMI RGGWCCY 2 cut(s) 691, 2113
PscI ACATGT 2 cut(s) 1392, 3807
PshAI GACNNNNGTC 1 cut(s) 3388
PshBI ATTAAT 2 cut(s) 2481, 3459
PsiI TTATAA 2 cut(s) 1728, 3281
Psp1406I AACGTT 1 cut(s) 866
Psp5II RGGWCCY 2 cut(s) 691, 2113
PspCI CACGTG 2 cut(s) 2270, 3698
PspEI GGTNACC 2 cut(s) 281, 2167
PspFI CCCAGC 1 cut(s) 4162
PspOMI GGGCCC 1 cut(s) 4092
PspPPI RGGWCCY 2 cut(s) 691, 2113
PsrI GAACNNNNNNTAC 2 cut(s) 3363, 3395
PstI CTGCAG 1 cut(s) 2995
PstNI CAGNNNCTG 3 cut(s) 131, 382, 1625
PsuI RGATCY 8 cut(s) 548, 1438, 1937, 2057, 2410, 2539, 3073, 3481
PvuII CAGCTG 4 cut(s) 263, 1450, 1622, 2252
RsaI GTAC 2 cut(s) 574, 3476
RsaNI GTAC 2 cut(s) 573, 3475
RseI CAYNNNNRTG 6 cut(s) 1137, 1395, 2472, 3327, 3438, 3636
SapI GCTCTTC 1 cut(s) 3510
SchI GAGTC 7 cut(s) 122, 137, 179, 1811, 2830, 3695, 4051
SduI GDGCHC 4 cut(s) 562, 1285, 1496, 4096
SfcI CTRYAG 4 cut(s) 823, 2991, 3033, 3855
SfoI GGCGCC 1 cut(s) 3616
SfuI TTCGAA 1 cut(s) 1481
SinI GGWCC 6 cut(s) 73, 691, 2113, 2514, 3304, 4036
SmaI CCCGGG 1 cut(s) 3395
SmiMI CAYNNNNRTG 6 cut(s) 1137, 1395, 2472, 3327, 3438, 3636
SmlI CTYRAG 4 cut(s) 1442, 2080, 2585, 2596
SmoI CTYRAG 4 cut(s) 1442, 2080, 2585, 2596
SpeI ACTAGT 1 cut(s) 176
SseBI AGGCCT 2 cut(s) 3146, 4008
SspDI GGCGCC 1 cut(s) 3614
SspMI CTAG 5 cut(s) 177, 332, 1505, 2709, 2901
StuI AGGCCT 2 cut(s) 3146, 4008
StyI CCWWGG 5 cut(s) 516, 1611, 1692, 1881, 2436
TaaI ACNGT 5 cut(s) 163, 378, 1927, 2651, 2757
TaiI ACGT 6 cut(s) 869, 1080, 1141, 2272, 3700, 4021
TaqI TCGA 9 cut(s) 14, 116, 225, 1481, 2068, 3508, 3689, 3804, 4265
TauI GCSGC 2 cut(s) 3785, 4130
TscAI CASTG 9 cut(s) 1170, 1330, 2059, 2308, 3322, 3505, 4059, 4110, 4129
TseFI GTSAC 6 cut(s) 179, 281, 1294, 1577, 2167, 3698
Tsp45I GTSAC 6 cut(s) 179, 281, 1294, 1577, 2167, 3698
TspGWI ACGGA 2 cut(s) 919, 2921
TspMI CCCGGG 1 cut(s) 3393
TspRI CASTG 9 cut(s) 1170, 1330, 2059, 2308, 3322, 3505, 4059, 4110, 4129
Van91I CCANNNNNTGG 1 cut(s) 2950
Vha464I CTTAAG 2 cut(s) 2585, 2596
VpaK11BI GGWCC 6 cut(s) 73, 691, 2113, 2514, 3304, 4036
VspI ATTAAT 2 cut(s) 2481, 3459
XagI CCTNNNNNAGG 1 cut(s) 276
XapI RAATTY 6 cut(s) 256, 1038, 1099, 1238, 1266, 2858
XbaI TCTAGA 1 cut(s) 2708
XceI RCATGY 6 cut(s) 405, 417, 1396, 2825, 2912, 3811
XcmI CCANNNNNNNNNTGG 3 cut(s) 1101, 1483, 4154
XmaI CCCGGG 1 cut(s) 3393
XmiI GTMKAC 1 cut(s) 1526
XmnI GAANNNNTTC 3 cut(s) 525, 3543, 3930
XspI CTAG 5 cut(s) 177, 332, 1505, 2709, 2901
Zsp2I ATGCAT 4 cut(s) 1355, 2823, 2910, 3183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.