Rw4G013500

mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0005851
Physical Location & Seq
Forward (+)
31537393 .. 31548107
10715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G013500.1

Sequence Viewer

Length: 4254 bp
ATGGCTGGAAAATCAAACAAAGGGAGGAACCGGAGAGGGTCACATAATGCTGCAAGTTCGTCTGATTCGGCGGTCCAGTCTGATGCTCCGGTGAAAGACAACTCAAAAGATAAGTCGACTGCTTCAGAGTCTGTCAAGGCCAATGCTAATGGTGTTCCAACTGTGCAAGAGTCAACTAGTGACAAGTTGGAGGTAAAGGATTCTGAAACTAATGTTGCAGTCGTCGAACCAAAGCAAGGTGAATCTGAAACAGAAAATTCAGCTGGCCAACCTAAGCAAGGTGACCTTCATCTTTACCCTGTCTCTGTCAAGACACAAAGTGGCGAGAAGCTAGAACTACAATTGAACCCAGGAGATTCTGTTATGGATATAAGACAGTTTCTGCTTGATGCTCCTGAGACATGCTTCTTTACATGCTATGACTTGTTGCTACACACCAAAGATGGCTCAACCTATCATTTGGAAGATTTTAATGAAATCTCTGAAGTTGCTGACATTACTATTGGTGGATGCTCCTTGGAAATGGTTCCAGCTTTATATGATGATAGATCTATAAGGGCTCATGTTCATCGTACCAGAGAATTACTTTCACTTTCCACACTTCATGCGTCGCTATCAACATCGCTTGCATTACAATATGAGACAGCTCAGAACAAAGTCCCTGAGCTTGATGGTTTGGGTTTTATGGAGGATGTTGCTGGTGCATTGAGTAATTTGCTCTCATCACCCTCAACAGAGATCAAATGCGTAGAGAGTATTGTGTTTTCATCCTTCAATCCTCCACCAAGCTATAGAAGGCTGGTCGGAGATTTGATTTATCTGGATGTTGTAACGTTGGAGGGTAATAAGCTTTGTATTACGGGGACTACGAAAATGTTTTATGTCAATTCAAGCTCCATAAATAATACCCTTAATCCCAGGCCAAGCAAAAGTTATCCAGAAGCGACCACACTTGTCGGGATTTTGCAAAAGATCAGCTCTAAGTTCCAAAAAGCTTTTCGTGAAATTTTGGAGCGGAGAGCTTCGGCACATCCTTTTGAAAACGTGCAATCTCTGTTACCACCAAATTCATGGTTAGGGTTACATCCAGTTCCAGATCACAAACGTGATGCAGCCAGAGCAGAGGATGCACTGACCCTCTCTTATGGTAGTGAGCTAATTGGTATGCAAAGGGATTGGAATGAGGAGTTGCAATCTTGTAGGGAATTTCCACATACAACTCCTCAGGAAAGAATTTTGCGGGATAGGGCTCTCTACAAAGTGACATCAGACTTCGTGGATGCAGCAATCAGTGGTGCTGTTGGAGTTATCAGCAGATGCATACCACCTATAAATCCAACTGATCCCGAGTGCTTCCACATGTATGTTCACAATAACATCTTCTTCAGTTTCGCTGTTGATGCGGATCTTGAGCAGCTGTCTAAGAACCATATGTCAGTTTCCAATTTGAAAATGGGGAGCACAGGCTCTCTAGGCAGTTCTTCTGAAAAGTCTACTGGCAGTTTGTTGCATAGAGAGAGTGAAATCACCAATGGGGAAAAATGTGATGCGTCATGCGCAGGGGAATGCCACGATGCCATGGAATCAGCTGCTGAGACACAATTGGGTGAGACTGAGCAGGCTACTTATGCTTCTGCAAATAATGATTTGAAAGGCACCAAGGCATACCAGGAAGCTGATGTCCCTGGACTTTATAATCTTGCTATGGCCATAATTGATTACAGAGGCCATAGAGTAGTAGCTCAGAGTGTTTTGCCAGGCATTCTTCAAGGGGATAAATCAGACTCTCTTTTATATGGTTCTGTTGATAATGGGAAAAAGATATGCTGGAATGAGGATTTTCATTCCAAGGTGGTGGAGGCTGCTAAACGCCTTCATTTGAAAGAACACACAGTCCTTGATGGATCTGGAAATGTTTTCAAATTAGCTGCACCAGTCGAATGCAAGGGTATTGTTGGTAGTGATGACAGGCATTATCTTCTTGACTTGATGAGAGTAACTCCTCGTGATGCAAACTTCACTGGATCTGGGTCTCGATTTTGTATCTTGAGACCAGAACTAATTACTTCCTATTGCCAGGTCCTTGATGCAGAGAAATCAAAATCGAAGTCTAAATGTGAAGGAGAGGCTCAGGTCACCGCTGATGGGCCAAACGATAACCAGGACATCGCACAAAAAGAGAAGACCGTTGATGCACAAGAAATTGTCTCACCACCAGCTGAAAGCTCTGAATCACATGAGGAAACTCTTTTCAACCCTAATGTCTTCACTGAGTTTAAGTTGGCTGGAAATGCGGAGGAGATAGCAACAGATGAAGAAAATGTGAGGAAAGCCAGTTTGTATCTTACTGAGGTTGTTCTTCCGAAGTTCATACAAGATCTTTGCACACTTGAAGTATCACCCATGGATGGGCAGACACTAACTGAAGCACTCCATGCTCATGGAATTAATGTTCGTTATATTGGAAAAGTGGCTGATGGGACCAGGCATTTACCTCATCTTTGGGATCTTTGTTCTAATGAGATTGTGGTTAGATCAGCCAAGCACATTCTTAAGGATGTCTTAAGAGATACAGAGGATCATGATATTGGGCCTGCAATCTGCCATTTCTTCAACTGTTTTTTCGGAAGCTATCAAGCTGTTGGCTCAAAAGTCGCTTCTAATAGTTCTCAGTCTAGAACCCCCAAAAAAGAACAAGCAGGTCATCAATCTCCGGGAAAACGGTCAAAGGGACAAGGAAGATGGAAGGCTGGAGCTTCTACAAGGAAGAGTGTATCTTCATATATGCATGTTAGCTCAGAGACTCTATGGTCTGACATTCAAGAATTTGCCAAACTCAAATATGAGTTTGAGTTGCCAAAGGATGCTAGGATGCATGTAAAGAAAGATTCGGTTATCCGTAATCTTTGCCAAAAGGTGGGCATTACAATTGCAGCTCGCAGATATGATCTGAAATCTGCAGCACCTTTTGAAATATCAGATATCTTGAATCTTCAACCTGTAGTGAAACACTCTGTTCCTGTTTGTTCAGAAGCTAAGGATCTTGTGGAAACAGGGAAAATCCAATTGGCTGAGGGAATGTTGAGTGAAGCCTACACATTATTTTCCGAGGCCTTTTCCATACTTCAGCAGGTTACAGGCCCAATGCATCGGGAGGTTGCTAACTGCTGTCGGTATCTTGCAATGGTTCTATATCATGCTGGAGACATGGCGGGAGCCATAATGCAACAGCACAAGGAGCTAATTATAAACGAGCGTTGCCTGGGTTTGGACCACCCTGACACTGCTCACAGCTATGGGAATATGGCTCTTTTCTATCATGGACTTAACCAAACAGAACTCGCCTTACGACATATGTCCCGGGCATTGCTCCTGTTAAGTTTGTCATCTGGCCCAGATCATCCTGATGTTGCAGCAACATTCATTAATGTTGCTATGATGTACCAGGATCTTGGGAAGATGGACACTGCTCTTCGATATTTGCAAGAGGCTTTGAAAAAGAATGAAAGGCTTCTGGGCGAGGAACATATCCAAACTGCTGTATGCTATCATGCACTTGCTATTGCATTTAATTGTATGGGTGCCTTCAAGCTCTCCCACCAGCATGAGAAGAAAACTTATGATATACTTGTCAAACAACTGGGTGAGGAGGATTCGAGGACACGTGACTCTCAAAACTGGATGAAGACATTTAAGTTGCGCGAGCAACAGATGAATGCACAAAAGCAAAAAGGTCAAGCTTTGAATGCCGCTTCAGCTCAAAAGGCAATCGACATGTTAAAGGCCAATCCTGACTTGATGCAGGCATTCCAATCTGCTGCTATAGCCGGCGGGTCTGGGAGTTCCAACACTTCTGTCAACAAATCTCTTAATGCTGCCGCAATAATGGGTGAAACTCTTCCCCGAGGGAGGGGAGTAGATGAGAGGGCTGAACGAGCAGCAGCCGAAATCAGGAAGAAGGCAGCAGCGAGAGGCCTCTTAATACGTCAACACGGTGTTCCGGTCCAAGCTCTGCCTCCACTGACTCATCTCCTCAATATCATGAGTGCAGCAGGTGGGGCCCCAGATTCAGTGGAAAATGGAGAAACCAATGGAGCGAAGGAAGGCAACAACCATCCTTCAAATGGCCCAGCAGATGCGAAAACTAACCAACCATCATTAGAGCCGGAAGGTCAACCTCCAGTTGGGTTGGGCAGAGGCTTAGCTGCACTGGATGGCAAGAAACAAAAGTCGAAAGCCAAAGCTGCATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU CLU_N DUF727 TPR_10 TPR_12 eIF3_p135

Protein Analysis

1417

Amino Acids

154.88

Weight (kDa)

5.97

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLU_N PF15044 119 - 195 4.7e-14 Mitochondrial function, CLU-N-term
CLU PF13236 392 - 673 1.6e-74 Clustered mitochondria
eIF3_p135 PF12807 799 - 983 4.1e-48 Translation initiation factor eIF3 subunit 135
TPR_12 PF13424 1060 - 1123 1.2e-08 Tetratricopeptide repeat
TPR_NPHP3 PF24885 1096 - 1217 1.6e-12 Nephrocystin-3 TPR domain
TPR_12 PF13424 1099 - 1166 1.1e-11 Tetratricopeptide repeat
TPR_12 PF13424 1136 - 1209 6.2e-14 Tetratricopeptide repeat
TPR_10 PF13374 1137 - 1177 1.1e-08 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1695, 3248
AarI CACCTGC 1 cut(s) 4043
AasI GACNNNNNNGTC 1 cut(s) 2809
Acc16I TGCGCA 1 cut(s) 1558
Acc36I ACCTGC 3 cut(s) 2690, 3121, 4043
AccB1I GGYRCC 2 cut(s) 1655, 3581
AccB7I CCANNNNNTGG 1 cut(s) 2917
AccBSI CCGCTC 1 cut(s) 1015
AccI GTMKAC 2 cut(s) 116, 1493
AccII CGCG 1 cut(s) 3702
AclI AACGTT 1 cut(s) 833
AclWI GGATC 8 cut(s) 1337, 1413, 1912, 2032, 2514, 2586, 3048, 3456
AcoI YGGCCR 2 cut(s) 265, 1707
AcsI RAATTY 6 cut(s) 256, 1005, 1066, 1205, 1233, 2825
AcuI CTGAAG 6 cut(s) 108, 504, 1369, 2445, 3110, 3738
AcvI CACGTG 1 cut(s) 3665
AdeI CACNNNGTG 1 cut(s) 320
AfaI GTAC 2 cut(s) 574, 3443
AflII CTTAAG 2 cut(s) 2552, 2563
AflIII ACRYGT 3 cut(s) 1359, 3662, 3774
AhlI ACTAGT 1 cut(s) 176
AjuI GAANNNNNNNTTGG 4 cut(s) 981, 1013, 3050, 3082
AleI CACNNNNGTG 1 cut(s) 1104
AloI GAACNNNNNNTCC 4 cut(s) 1878, 1910, 2436, 2468
Alw21I GWGCWC 1 cut(s) 1463
AlwI GGATC 8 cut(s) 1337, 1413, 1912, 2032, 2514, 2586, 3048, 3456
AlwNI CAGNNNCTG 3 cut(s) 131, 382, 1592
Ama87I CYCGRG 3 cut(s) 1346, 3360, 3903
ApaI GGGCCC 1 cut(s) 4063
ApoI RAATTY 6 cut(s) 256, 1005, 1066, 1205, 1233, 2825
ArsI GACNNNNNNTTYG 4 cut(s) 98, 130, 2093, 2125
AseI ATTAAT 2 cut(s) 2448, 3426
Asp700I GAANNNNTTC 3 cut(s) 525, 3510, 3897
AspLEI GCGC 2 cut(s) 1559, 3702
AsuC2I CCSGG 3 cut(s) 2715, 3361, 3362
AvaI CYCGRG 3 cut(s) 1346, 3360, 3903
AvaII GGWCC 5 cut(s) 73, 2080, 2481, 3271, 4003
AxyI CCTNAGG 1 cut(s) 1224
BaeGI GKGCMC 1 cut(s) 4063
BalI TGGCCA 2 cut(s) 267, 1709
BanI GGYRCC 2 cut(s) 1655, 3581
BanII GRGCYC 3 cut(s) 562, 1252, 4063
BauI CACGAG 1 cut(s) 2004
BbrPI CACGTG 1 cut(s) 3665
BbsI GAAGAC 3 cut(s) 2189, 2257, 3692
Bbv12I GWGCWC 1 cut(s) 1463
BbvCI CCTCAGC 1 cut(s) 3072
BcnI CCSGG 3 cut(s) 2715, 3361, 3362
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 5 cut(s) 177, 332, 1472, 2676, 2868
BfmI CTRYAG 4 cut(s) 790, 2958, 3000, 3822
BfrI CTTAAG 2 cut(s) 2552, 2563
BfuAI ACCTGC 3 cut(s) 2690, 3121, 4043
BglII AGATCT 2 cut(s) 548, 2377
BlpI GCTNAGC 1 cut(s) 4201
Bme18I GGWCC 5 cut(s) 73, 2080, 2481, 3271, 4003
BmeT110I CYCGRG 3 cut(s) 1346, 3360, 3903
BmiI GGNNCC 9 cut(s) 29, 528, 1657, 2482, 3217, 3583, 4060, 4061, 4062
BmrI ACTGGG 1 cut(s) 3650
BmuI ACTGGG 1 cut(s) 3650
BoxI GACNNNNGTC 1 cut(s) 3355
BpiI GAAGAC 3 cut(s) 2189, 2257, 3692
BplI GAGNNNNNCTC 2 cut(s) 1984, 2016
BpmI CTGGAG 3 cut(s) 2772, 3222, 4164
Bpu10I CCTNAGC 5 cut(s) 273, 663, 2130, 3036, 3072
Bpu1102I GCTNAGC 1 cut(s) 4201
BpuEI CTTGAG 2 cut(s) 1430, 2068
BpuMI CCSGG 3 cut(s) 2715, 3361, 3362
BsaAI YACGTR 1 cut(s) 3665
BsaBI GATNNNNATC 1 cut(s) 1404
BsaI GGTCTC 2 cut(s) 2037, 2044
BsaWI WCCGGW 3 cut(s) 30, 88, 4000
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bse118I RCCGGY 1 cut(s) 3827
Bse21I CCTNAGG 1 cut(s) 1224
Bse3DI GCAATG 2 cut(s) 3189, 3365
Bse8I GATNNNNATC 1 cut(s) 1404
BseJI GATNNNNATC 1 cut(s) 1404
BseMI GCAATG 2 cut(s) 3189, 3365
BseRI GAGGAG 6 cut(s) 1199, 1212, 1992, 2312, 3662, 4022
BseSI GKGCMC 1 cut(s) 4063
BseYI CCCAGC 1 cut(s) 4129
BsgI GTGCAG 3 cut(s) 1914, 4068, 4191
Bsh1236I CGCG 1 cut(s) 3702
BshNI GGYRCC 2 cut(s) 1655, 3581
BsiHKAI GWGCWC 1 cut(s) 1463
BsiHKCI CYCGRG 3 cut(s) 1346, 3360, 3903
BsiSI CCGG 7 cut(s) 31, 89, 2714, 3361, 3828, 4001, 4166
BslFI GGGAC 6 cut(s) 644, 877, 1667, 2494, 2745, 3343
BsmFI GGGAC 6 cut(s) 644, 877, 1667, 2494, 2745, 3343
BsmI GAATGC 6 cut(s) 1571, 1761, 1946, 3721, 3751, 3806
Bso31I GGTCTC 2 cut(s) 2037, 2044
BsoBI CYCGRG 3 cut(s) 1346, 3360, 3903
Bsp120I GGGCCC 1 cut(s) 4059
Bsp1286I GDGCHC 4 cut(s) 562, 1252, 1463, 4063
Bsp1720I GCTNAGC 1 cut(s) 4201
Bsp19I CCATGG 2 cut(s) 1578, 2403
BspFNI CGCG 1 cut(s) 3702
BspHI TCATGA 2 cut(s) 2581, 4041
BspLI GGNNCC 9 cut(s) 29, 528, 1657, 2482, 3217, 3583, 4060, 4061, 4062
BspMAI CTGCAG 1 cut(s) 2962
BspMI ACCTGC 3 cut(s) 2690, 3121, 4043
BspPI GGATC 8 cut(s) 1337, 1413, 1912, 2032, 2514, 2586, 3048, 3456
BspQI GCTCTTC 1 cut(s) 3477
BspT107I GGYRCC 2 cut(s) 1655, 3581
BspTI CTTAAG 2 cut(s) 2552, 2563
BspTNI GGTCTC 2 cut(s) 2037, 2044
BsrBI CCGCTC 1 cut(s) 1015
BsrDI GCAATG 2 cut(s) 3189, 3365
BsrFI RCCGGY 1 cut(s) 3827
BssAI RCCGGY 1 cut(s) 3827
BssSI CACGAG 1 cut(s) 2004
BssT1I CCWWGG 5 cut(s) 516, 1578, 1659, 1848, 2403
Bst2BI CACGAG 1 cut(s) 2004
Bst4CI ACNGT 7 cut(s) 163, 378, 1894, 2188, 2618, 2724, 3995
Bst6I CTCTTC 3 cut(s) 2762, 3477, 3903
BstAFI CTTAAG 2 cut(s) 2552, 2563
BstAPI GCANNNNNTGC 2 cut(s) 1127, 2435
BstBAI YACGTR 1 cut(s) 3665
BstC8I GCNNGC 8 cut(s) 265, 627, 1620, 2595, 2938, 3704, 3804, 3829
BstDSI CCRYGG 2 cut(s) 1578, 2403
BstEII GGTNACC 2 cut(s) 281, 2134
BstENI CCTNNNNNAGG 1 cut(s) 276
BstFNI CGCG 1 cut(s) 3702
BstHHI GCGC 2 cut(s) 1559, 3702
BstNSI RCATGY 6 cut(s) 405, 417, 1363, 2792, 2879, 3778
BstPAI GACNNNNGTC 1 cut(s) 3355
BstPI GGTNACC 2 cut(s) 281, 2134
BstSFI CTRYAG 4 cut(s) 790, 2958, 3000, 3822
BstSLI GKGCMC 1 cut(s) 4063
BstUI CGCG 1 cut(s) 3702
BstV2I GAAGAC 3 cut(s) 2189, 2257, 3692
BstX2I RGATCY 8 cut(s) 548, 1405, 1904, 2024, 2377, 2506, 3040, 3448
BstXI CCANNNNNNTGG 4 cut(s) 1071, 1855, 2441, 3452
BstYI RGATCY 8 cut(s) 548, 1405, 1904, 2024, 2377, 2506, 3040, 3448
Bsu36I CCTNAGG 1 cut(s) 1224
BtgI CCRYGG 2 cut(s) 1578, 2403
BtgZI GCGATG 2 cut(s) 606, 2152
BtsI GCAGTG 2 cut(s) 3282, 3465
BtsIMutI CAGTG 9 cut(s) 1130, 1297, 2019, 2268, 3282, 3465, 4019, 4077, 4208
BveI ACCTGC 3 cut(s) 2690, 3121, 4043
Cac8I GCNNGC 8 cut(s) 265, 627, 1620, 2595, 2938, 3704, 3804, 3829
CaiI CAGNNNCTG 3 cut(s) 131, 382, 1592
CciI TCATGA 2 cut(s) 2581, 4041
CfoI GCGC 2 cut(s) 1559, 3702
Cfr10I RCCGGY 1 cut(s) 3827
Cfr9I CCCGGG 1 cut(s) 3360
CseI GACGC 2 cut(s) 597, 1539
Csp6I GTAC 2 cut(s) 573, 3442
CviQI GTAC 2 cut(s) 573, 3442
DraIII CACNNNGTG 1 cut(s) 320
DrdI GACNNNNNNGTC 1 cut(s) 2809
DseDI GACNNNNNNGTC 1 cut(s) 2809
EaeI YGGCCR 2 cut(s) 265, 1707
Eam1104I CTCTTC 3 cut(s) 2762, 3477, 3903
EarI CTCTTC 3 cut(s) 2762, 3477, 3903
Eco130I CCWWGG 5 cut(s) 516, 1578, 1659, 1848, 2403
Eco147I AGGCCT 2 cut(s) 3113, 3975
Eco24I GRGCYC 3 cut(s) 562, 1252, 4063
Eco31I GGTCTC 2 cut(s) 2037, 2044
Eco32I GATATC 1 cut(s) 2983
Eco47I GGWCC 5 cut(s) 73, 2080, 2481, 3271, 4003
Eco57I CTGAAG 6 cut(s) 108, 504, 1369, 2445, 3110, 3738
Eco72I CACGTG 1 cut(s) 3665
Eco81I CCTNAGG 1 cut(s) 1224
Eco88I CYCGRG 3 cut(s) 1346, 3360, 3903
Eco91I GGTNACC 2 cut(s) 281, 2134
EcoNI CCTNNNNNAGG 1 cut(s) 276
EcoO109I RGGNCCY 3 cut(s) 2080, 4059, 4060
EcoO65I GGTNACC 2 cut(s) 281, 2134
EcoRV GATATC 1 cut(s) 2983
EcoT14I CCWWGG 5 cut(s) 516, 1578, 1659, 1848, 2403
EcoT22I ATGCAT 4 cut(s) 1322, 2790, 2877, 3150
EcoT38I GRGCYC 3 cut(s) 562, 1252, 4063
ErhI CCWWGG 5 cut(s) 516, 1578, 1659, 1848, 2403
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 2546, 2578
FaqI GGGAC 6 cut(s) 644, 877, 1667, 2494, 2745, 3343
FauI CCCGC 3 cut(s) 1233, 3205, 3824
FauNDI CATATG 2 cut(s) 1431, 3354
FblI GTMKAC 2 cut(s) 116, 1493
FriOI GRGCYC 3 cut(s) 562, 1252, 4063
FspBI CTAG 5 cut(s) 177, 332, 1472, 2676, 2868
FspI TGCGCA 1 cut(s) 1558
GlaI GCGC 2 cut(s) 1558, 3701
GsaI CCCAGC 1 cut(s) 4133
GsuI CTGGAG 3 cut(s) 2772, 3222, 4164
HapII CCGG 7 cut(s) 31, 89, 2714, 3361, 3828, 4001, 4166
HgaI GACGC 2 cut(s) 597, 1539
HhaI GCGC 2 cut(s) 1559, 3702
Hin6I GCGC 2 cut(s) 1557, 3700
HinP1I GCGC 2 cut(s) 1557, 3700
HincII GTYRAC 5 cut(s) 117, 174, 3859, 3989, 4175
HindII GTYRAC 5 cut(s) 117, 174, 3859, 3989, 4175
HindIII AAGCTT 3 cut(s) 848, 993, 3738
HpaII CCGG 7 cut(s) 31, 89, 2714, 3361, 3828, 4001, 4166
Hpy166II GTNNAC 7 cut(s) 117, 174, 1369, 1494, 3859, 3989, 4175
Hpy8I GTNNAC 7 cut(s) 117, 174, 1369, 1494, 3859, 3989, 4175
Hpy99I CGWCG 2 cut(s) 227, 613
HpyCH4III ACNGT 7 cut(s) 163, 378, 1894, 2188, 2618, 2724, 3995
HpyCH4IV ACGT 5 cut(s) 833, 1044, 1105, 3664, 3985
HpySE526I ACGT 5 cut(s) 833, 1044, 1105, 3664, 3985
HspAI GCGC 2 cut(s) 1557, 3700
KroI GCCGGC 1 cut(s) 3827
KroNI GCCGGC 1 cut(s) 3829
LguI GCTCTTC 1 cut(s) 3477
MaeI CTAG 5 cut(s) 177, 332, 1472, 2676, 2868
MaeII ACGT 5 cut(s) 833, 1044, 1105, 3664, 3985
MbiI CCGCTC 1 cut(s) 1015
MfeI CAATTG 4 cut(s) 341, 1601, 2928, 3065
MflI RGATCY 8 cut(s) 548, 1405, 1904, 2024, 2377, 2506, 3040, 3448
MhlI GDGCHC 4 cut(s) 562, 1252, 1463, 4063
MlsI TGGCCA 2 cut(s) 267, 1709
MluNI TGGCCA 2 cut(s) 267, 1709
MlyI GAGTC 6 cut(s) 137, 179, 1778, 2797, 3662, 4018
MmeI TCCRAC 7 cut(s) 168, 182, 784, 816, 1282, 1361, 3870
Mox20I TGGCCA 2 cut(s) 267, 1709
Mph1103I ATGCAT 4 cut(s) 1322, 2790, 2877, 3150
MroNI GCCGGC 1 cut(s) 3827
MroXI GAANNNNTTC 3 cut(s) 525, 3510, 3897
MscI TGGCCA 2 cut(s) 267, 1709
MslI CAYNNNNRTG 6 cut(s) 1104, 1362, 2439, 3294, 3405, 3603
Msp20I TGGCCA 2 cut(s) 267, 1709
MspA1I CMGCKG 5 cut(s) 263, 1417, 1589, 2141, 2219
MspCI CTTAAG 2 cut(s) 2552, 2563
MspI CCGG 7 cut(s) 31, 89, 2714, 3361, 3828, 4001, 4166
MunI CAATTG 4 cut(s) 341, 1601, 2928, 3065
Mva1269I GAATGC 6 cut(s) 1571, 1761, 1946, 3721, 3751, 3806
MvnI CGCG 1 cut(s) 3702
NaeI GCCGGC 1 cut(s) 3829
NciI CCSGG 3 cut(s) 2715, 3361, 3362
NcoI CCATGG 2 cut(s) 1578, 2403
NdeI CATATG 2 cut(s) 1431, 3354
NgoMIV GCCGGC 1 cut(s) 3827
NlaIV GGNNCC 9 cut(s) 29, 528, 1657, 2482, 3217, 3583, 4060, 4061, 4062
NmuCI GTSAC 6 cut(s) 39, 179, 281, 1261, 2134, 3665
NsbI TGCGCA 1 cut(s) 1558
NsiI ATGCAT 4 cut(s) 1322, 2790, 2877, 3150
NspI RCATGY 6 cut(s) 405, 417, 1363, 2792, 2879, 3778
OliI CACNNNNGTG 1 cut(s) 1104
PagI TCATGA 2 cut(s) 2581, 4041
PaqCI CACCTGC 1 cut(s) 4043
PceI AGGCCT 2 cut(s) 3113, 3975
PciI ACATGT 2 cut(s) 1359, 3774
PciSI GCTCTTC 1 cut(s) 3477
PcsI WCGNNNNNNNCGW 1 cut(s) 866
PctI GAATGC 6 cut(s) 1571, 1761, 1946, 3721, 3751, 3806
PdiI GCCGGC 1 cut(s) 3829
PdmI GAANNNNTTC 3 cut(s) 525, 3510, 3897
PflMI CCANNNNNTGG 1 cut(s) 2917
PfoI TCCNGGA 1 cut(s) 2713
PleI GAGTC 6 cut(s) 136, 178, 1778, 2797, 3662, 4018
PmaCI CACGTG 1 cut(s) 3665
PmlI CACGTG 1 cut(s) 3665
PpsI GAGTC 6 cut(s) 136, 178, 1778, 2797, 3662, 4018
Ppu21I YACGTR 1 cut(s) 3665
PpuMI RGGWCCY 1 cut(s) 2080
PscI ACATGT 2 cut(s) 1359, 3774
PshAI GACNNNNGTC 1 cut(s) 3355
PshBI ATTAAT 2 cut(s) 2448, 3426
PsiI TTATAA 2 cut(s) 1695, 3248
Psp1406I AACGTT 1 cut(s) 833
Psp5II RGGWCCY 1 cut(s) 2080
PspCI CACGTG 1 cut(s) 3665
PspEI GGTNACC 2 cut(s) 281, 2134
PspFI CCCAGC 1 cut(s) 4129
PspN4I GGNNCC 9 cut(s) 29, 528, 1657, 2482, 3217, 3583, 4060, 4061, 4062
PspOMI GGGCCC 1 cut(s) 4059
PspPPI RGGWCCY 1 cut(s) 2080
PsrI GAACNNNNNNTAC 2 cut(s) 3330, 3362
PstI CTGCAG 1 cut(s) 2962
PstNI CAGNNNCTG 3 cut(s) 131, 382, 1592
PsuI RGATCY 8 cut(s) 548, 1405, 1904, 2024, 2377, 2506, 3040, 3448
PvuII CAGCTG 4 cut(s) 263, 1417, 1589, 2219
RsaI GTAC 2 cut(s) 574, 3443
RsaNI GTAC 2 cut(s) 573, 3442
RseI CAYNNNNRTG 6 cut(s) 1104, 1362, 2439, 3294, 3405, 3603
SalI GTCGAC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 3477
SchI GAGTC 6 cut(s) 137, 179, 1778, 2797, 3662, 4018
SduI GDGCHC 4 cut(s) 562, 1252, 1463, 4063
SfcI CTRYAG 4 cut(s) 790, 2958, 3000, 3822
SinI GGWCC 5 cut(s) 73, 2080, 2481, 3271, 4003
SmaI CCCGGG 1 cut(s) 3362
SmiMI CAYNNNNRTG 6 cut(s) 1104, 1362, 2439, 3294, 3405, 3603
SmlI CTYRAG 4 cut(s) 1409, 2047, 2552, 2563
SmoI CTYRAG 4 cut(s) 1409, 2047, 2552, 2563
SpeI ACTAGT 1 cut(s) 176
SseBI AGGCCT 2 cut(s) 3113, 3975
SspMI CTAG 5 cut(s) 177, 332, 1472, 2676, 2868
StuI AGGCCT 2 cut(s) 3113, 3975
StyI CCWWGG 5 cut(s) 516, 1578, 1659, 1848, 2403
TaaI ACNGT 7 cut(s) 163, 378, 1894, 2188, 2618, 2724, 3995
TaiI ACGT 5 cut(s) 836, 1047, 1108, 3667, 3988
TaqI TCGA 9 cut(s) 116, 225, 1938, 2035, 2105, 3475, 3656, 3771, 4232
TauI GCSGC 2 cut(s) 3752, 3881
TscAI CASTG 9 cut(s) 1137, 1297, 2026, 2275, 3289, 3472, 4026, 4077, 4215
TseFI GTSAC 6 cut(s) 39, 179, 281, 1261, 2134, 3665
Tsp45I GTSAC 6 cut(s) 39, 179, 281, 1261, 2134, 3665
TspGWI ACGGA 1 cut(s) 2888
TspMI CCCGGG 1 cut(s) 3360
TspRI CASTG 9 cut(s) 1137, 1297, 2026, 2275, 3289, 3472, 4026, 4077, 4215
Van91I CCANNNNNTGG 1 cut(s) 2917
Vha464I CTTAAG 2 cut(s) 2552, 2563
VpaK11BI GGWCC 5 cut(s) 73, 2080, 2481, 3271, 4003
VspI ATTAAT 2 cut(s) 2448, 3426
XagI CCTNNNNNAGG 1 cut(s) 276
XapI RAATTY 6 cut(s) 256, 1005, 1066, 1205, 1233, 2825
XbaI TCTAGA 1 cut(s) 2675
XceI RCATGY 6 cut(s) 405, 417, 1363, 2792, 2879, 3778
XcmI CCANNNNNNNNNTGG 3 cut(s) 1068, 1450, 4121
XmaI CCCGGG 1 cut(s) 3360
XmiI GTMKAC 2 cut(s) 116, 1493
XmnI GAANNNNTTC 3 cut(s) 525, 3510, 3897
XspI CTAG 5 cut(s) 177, 332, 1472, 2676, 2868
Zsp2I ATGCAT 4 cut(s) 1322, 2790, 2877, 3150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.