Rh4AG161800

mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0005851
Physical Location & Seq
Forward (+)
41089894 .. 41103708
13815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG161800.1

Sequence Viewer

Length: 3666 bp
ATGGCTGGAAAATCGAACAAAGGGAGGAACCGGAGAGGGTCACATAATGCTGCAAGTTCGTCTGATTCGGCGGTCCAGTCTGATGCTCCTGTGAAAGACAACTCAAAAGATGAGTCGAGTGCTTCAGAGTCTGTCAAGGCCAATGCTAATGGTGTTCCAACTGTGCAAGAGTCAACTAGTGACAAGCTGGAGGTAAAGGATTCTGAAACTAATGTTGCAGTCGTCGAACCAAAGCAAGGTGAATCTGAAACTGAAAATTCAGCTGGCCAACCTAAGCAAGGTGACCTTCATCTTTACCCTGTCTCTGTCAAGACACAAGGTGGCGAGAAGCTAGAACTACAATTGAACCCAGGAGATTCTGTTATGGATATAAGACAGTTTCTGCTTGATGCTCCTGAGACATGCTTCTTTACATGCTATGACTTGTTGCTACACACCAAAGATGGCTCAACCTATCATTTGGAAGATTTTAATGAAATCTCTGAAGTTGCTGACATTACTATTGGTGGATGCTCCTTGGAAATGGTTCCAGCTTTATATGATGATAGATCTATAAGGGCTCATGTTCATCGTACCAGAGAATTACTTTCACTTTCCACACTTCATGCGTCGCTATCAACATCGCTTGCATTACAATATGAGACAGCTCAGAACAAAGTAGCAACTCCTGGAGATACCATCAAAACTGAGGTCCCTGAGCTTGATGGTTTGGGTTTTATGGAGGATGTTGCTGGTGCATTGAGTAATTTGCTCTCATCACCCTCAAATGAGATCAAATGCGTAGAGAGTATTGTGTTTTCATCCTTCAATCCTCCACCAAGCTATAGAAGGCTGGTCGGAGATTTGATTTATCTGGATGTCGTAACGTTGGAGGGTAATAAGCTTTGTATTACGGGGACTACAAAAATGTTTTATGTCAATTCAAGCTCCGTAAATAATACCCTTAATCCCAGGCCAAGCAAAAGTTATCCAGAAGCGACCACACTTGTCGGGATTTTGCAAAAGATCAGCTCTAAGTTCCAAAAAGCTTTTCGTGAAATTTTGGAGCGGAGAGCTTCTGCACATCCTTTTGAAAACGTGCAATCTCTGTTACCACCAAATTCGTGGTTAGGGTTACATCCAGTTCCAGATCACAAACGTGATGCAGCCAGAGCAGAGGATGCACTGACCCTCTCTTATGGTAGTGAGCTAATTGGTATGCAAAGGGATTGGAATGAGGAGTTGCAATCTTGTAGGGAATTTCCACATACAACTCCTCAGGAAAGAATTTTGCGGGATAGGGCTCTCTACAAAGTGACATCAGACTTCGTGGATGCAGCAATCAGTGGTGCTGTTGGAGTTATCAGCAGATGCATACCACCTATAAATCCAACTGATCCCGAGTGCTTCCACATGTATGTTCACAATAACATCTTCTTCAGTTTCGCTGTTGATGCGGATCTTGAGCAGCTGTCTAAGAACCATATGTCAGTTTCCAATTCGAAAATGGGGAGCACCGGCTCTCTAGGCAGTTCTTCTGAAAAGTCTACTGGCAGTTTGTTGCATAGAGAGAGTGAAATCCCCAATGGGGAAAAATGTGACGCGTCATGCGCAGGGGAATGCCACGATGCCATGGAATCAGCTGCTGAGACACAATTGGGTGAGACTGAGCAGGCTACTTATGCTTCTGCAAATAATGATTTGAAAGGCACCAAGGCATACCAGGAAGCTGATGTCCCTGGACTTTATAATCTTGCTATGGCCATAATTGATTACAGAGGCCATAGAGTAGTAGCTCAGAGTGTTTTGCCAGGCATTCTTCAAGGGGATAAATCAGACTCTCTTTTATATGGTTCTGTTGATAATGGGAAAAAGATATGCTGGAATGAGGATTTTCATTCCAAGGTGGTGGAGGCTGCTAAACGCCTTCATTTGAAAGAACACACAGTCCTTGATGGATCTGGAAATGTTTTCAAGTTAGCTGCACCAGTTGAATGCAAGGGTATTGTTGGTAGTGATGACAGGCATTATCTTCTTGACTTGATGAGAGTAACTCCTCGTGATGCAAACTTCACTGGATCTGGGTCTCGATTTTGTATCTTGAGACCAGAACTAATTACTTCCTATTGCCAGGTCCTTGATGCAGAGAAATCAAAATCTAAGTCTAAATGTGAAGGAGAGGCTCAGGTCACCGCTGATGGGCCAAACGATAACCAGGACATCGCAGAAAAAGAGAAGACCATTGATGCACAAGAAATTGTCTCACCACCAGCTGAAAGCTCTGAATCACGTGAGGAAACTCTTTTCAACCCTAATGTCTTCACTGAGTTTAAGTTGGCTGGAAATGCGGAGGAGATAGCAACAGATGAAGAAAATGTGAGGAAAGCCAGTTTGTATCTTACTGAGGTTGTTCTTCCGAAGTTCATACAAGATCTTTGCACACTTGAAGTATCACCCATGGATGGGCAGACACTAACTGAAGCACTCCATGCTCATGGAATTAATGTTCGTTATATTGGAAAAGTGGCTGATGGGACCAGGCATTTACCTCATCTTTGGGATCTTTGTTCTAATGAGATTGTGGTTAGATCAGCCAAGCACATTCTTAAGGATGTCTTAAGAGATACAGAGGATCATGATATTGGGCCTGCAATCTGCCATTTCTTCAACTGTTTTTTCGGAAGCTATCAAGCTGTTGGCTCAAAAGTCGCTGCTAATAGTTCTCAGTCTAGAACCCCCAAAAAGGAACAAGCAGGTCATCAATCTCCGGGAAAACGGTCAAAGGGACAAGGAAGATGGAAGGCTGGAGCTTCTACAAGGAAGAGTGTATCTTCATATATGCATGTTAGCTCAGAGACTCTATGGTCTGACATTCAAGAATTTGCCAAACTCAAATATGAGTTTGAGTTGCCAAAGGATGCTAGGATGCATGTAAAGAAAGATTCGGTTATCCGTAATCTTTGCCAAAAGGTGGGCATTACAATTGCAGCTCGCAGATATGATCTGAAATCTGCAGCACCTTTTGAAATATCAGATATCTTGAATCTTCAACCTGTAGTGAAACACTCTGTTCCTGTTTGTTCAGAAGCTAAGGATCTTGTGGAAACAGGGAAAATCCAATTGGCTGAGGGAATGTTGAGTGAAGCCTACACATTATTTTCCGAGGCCTTTTCCATACTTCAGCAGGTTACAGGCCCAATGCATCGGGAGGTTGCTAACTGCTGTCGGTATCTTGCAATGGTTCTGTATCATGCTGGAGACATGGCGGGAGCCATAATGCAACAGCACAAGGAGCTAATTATAAACGAGCGTTGCCTGGGTTTGGACCACCCTGACACTGCTCACAGCTATGGGAATATGGCTCTTTTCTATCATGGACTTAACCAAACAGAACTCGCCTTACGACATATGTCCCGGGCGTTGCTCCTGTTAAGTTTGTCATCTGGCCCAGATCATCCTGATGTCGCAGCAACATTCATTAATGTTGCTATGATGTACCAGGATCTTGGGAAGATGGACACTGCTCTTCGATATTTGCAAGAGGCTTTGAAAAAGAATGAAAGGCTTCTGGGCGAGGAACATATCCAAACTGCTGTATGCTATCATGCACTTGCTATTGCATTTAATTGTATGGGCGCCTTCAAGCTCTCCCACCAGGTATGCTTCTTAATAGAAAGATTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU CLU_N DUF727 TPR_10 TPR_12 eIF3_p135

Protein Analysis

1221

Amino Acids

134.31

Weight (kDa)

5.58

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLU_N PF15044 119 - 195 3.9e-14 Mitochondrial function, CLU-N-term
CLU PF13236 403 - 684 1.2e-74 Clustered mitochondria
eIF3_p135 PF12807 810 - 994 4.3e-48 Translation initiation factor eIF3 subunit 135
TPR_12 PF13424 1071 - 1134 1.1e-08 Tetratricopeptide repeat
TPR_12 PF13424 1105 - 1177 1.2e-12 Tetratricopeptide repeat
TPR_NPHP3 PF24885 1106 - 1211 1.6e-10 Nephrocystin-3 TPR domain
TPR_12 PF13424 1147 - 1209 4.1e-12 Tetratricopeptide repeat
TPR_10 PF13374 1148 - 1188 8.9e-09 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1728, 3281
AasI GACNNNNNNGTC 1 cut(s) 2842
Acc16I TGCGCA 1 cut(s) 1591
Acc36I ACCTGC 2 cut(s) 2723, 3154
AccB1I GGYRCC 2 cut(s) 1688, 3614
AccB7I CCANNNNNTGG 1 cut(s) 2950
AccBSI CCGCTC 1 cut(s) 1048
AccI GTMKAC 1 cut(s) 1526
AccII CGCG 1 cut(s) 1583
AciI CCGC 7 cut(s) 71, 1048, 1273, 1436, 2172, 2327, 3245
AclI AACGTT 1 cut(s) 866
AclWI GGATC 8 cut(s) 1370, 1446, 1945, 2065, 2547, 2619, 3081, 3489
AcoI YGGCCR 2 cut(s) 265, 1740
AcsI RAATTY 6 cut(s) 256, 1038, 1099, 1238, 1266, 2858
AcuI CTGAAG 5 cut(s) 108, 504, 1402, 2478, 3143
AcvI CACGTG 1 cut(s) 2270
AcyI GRCGYC 1 cut(s) 3615
AdeI CACNNNGTG 1 cut(s) 320
AfaI GTAC 2 cut(s) 574, 3476
AfiI CCNNNNNNNGG 9 cut(s) 236, 278, 1567, 2178, 2441, 2442, 2722, 2950, 3301
AflII CTTAAG 2 cut(s) 2585, 2596
AflIII ACRYGT 2 cut(s) 1392, 1581
AhlI ACTAGT 1 cut(s) 176
AjuI GAANNNNNNNTTGG 4 cut(s) 1014, 1046, 3083, 3115
AleI CACNNNNGTG 1 cut(s) 1137
AloI GAACNNNNNNTCC 4 cut(s) 1911, 1943, 2469, 2501
Alw21I GWGCWC 1 cut(s) 1496
AlwI GGATC 8 cut(s) 1370, 1446, 1945, 2065, 2547, 2619, 3081, 3489
AlwNI CAGNNNCTG 3 cut(s) 131, 382, 1625
Ama87I CYCGRG 2 cut(s) 1379, 3393
ApoI RAATTY 6 cut(s) 256, 1038, 1099, 1238, 1266, 2858
ArsI GACNNNNNNTTYG 6 cut(s) 98, 130, 675, 707, 2126, 2158
AseI ATTAAT 2 cut(s) 2481, 3459
Asp700I GAANNNNTTC 2 cut(s) 525, 3543
AspLEI GCGC 2 cut(s) 1592, 3617
AspS9I GGNCC 9 cut(s) 73, 691, 2113, 2180, 2514, 2624, 3173, 3304, 3425
AsuC2I CCSGG 3 cut(s) 2748, 3394, 3395
AsuHPI GGTGA 7 cut(s) 251, 293, 750, 1652, 2161, 2235, 2424
AsuII TTCGAA 1 cut(s) 1481
AvaI CYCGRG 2 cut(s) 1379, 3393
AvaII GGWCC 5 cut(s) 73, 691, 2113, 2514, 3304
AxyI CCTNAGG 1 cut(s) 1257
BalI TGGCCA 2 cut(s) 267, 1742
BanI GGYRCC 2 cut(s) 1688, 3614
BanII GRGCYC 2 cut(s) 562, 1285
BauI CACGAG 1 cut(s) 2037
BbrPI CACGTG 1 cut(s) 2270
BbsI GAAGAC 2 cut(s) 2222, 2290
Bbv12I GWGCWC 1 cut(s) 1496
BbvCI CCTCAGC 1 cut(s) 3105
BccI CCATC 9 cut(s) 437, 686, 698, 1928, 2171, 2435, 2504, 2769, 3487
BcnI CCSGG 3 cut(s) 2748, 3394, 3395
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 5 cut(s) 177, 332, 1505, 2709, 2901
BfmI CTRYAG 3 cut(s) 823, 2991, 3033
BfoI RGCGCY 1 cut(s) 3618
BfrI CTTAAG 2 cut(s) 2585, 2596
BfuAI ACCTGC 2 cut(s) 2723, 3154
BglII AGATCT 2 cut(s) 548, 2410
Bme18I GGWCC 5 cut(s) 73, 691, 2113, 2514, 3304
BmeT110I CYCGRG 2 cut(s) 1379, 3393
BmgT120I GGNCC 9 cut(s) 73, 691, 2113, 2180, 2514, 2624, 3173, 3304, 3425
BmiI GGNNCC 7 cut(s) 29, 528, 693, 1690, 2515, 3250, 3616
BoxI GACNNNNGTC 1 cut(s) 3388
BpiI GAAGAC 2 cut(s) 2222, 2290
BplI GAGNNNNNCTC 2 cut(s) 2017, 2049
BpmI CTGGAG 4 cut(s) 209, 690, 2805, 3255
Bpu10I CCTNAGC 5 cut(s) 273, 696, 2163, 3069, 3105
Bpu14I TTCGAA 1 cut(s) 1481
BpuEI CTTGAG 2 cut(s) 1463, 2101
BpuMI CCSGG 3 cut(s) 2748, 3394, 3395
BsaAI YACGTR 1 cut(s) 2270
BsaBI GATNNNNATC 1 cut(s) 1437
BsaHI GRCGYC 1 cut(s) 3615
BsaI GGTCTC 2 cut(s) 2070, 2077
BsaWI WCCGGW 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 9 cut(s) 236, 278, 1567, 2178, 2441, 2442, 2722, 2950, 3301
Bse118I RCCGGY 1 cut(s) 1496
Bse1I ACTGG 6 cut(s) 76, 1121, 1534, 1967, 2059, 2367
Bse21I CCTNAGG 1 cut(s) 1257
Bse3DI GCAATG 1 cut(s) 3222
Bse8I GATNNNNATC 1 cut(s) 1437
BseJI GATNNNNATC 1 cut(s) 1437
BseLI CCNNNNNNNGG 9 cut(s) 236, 278, 1567, 2178, 2441, 2442, 2722, 2950, 3301
BseMI GCAATG 1 cut(s) 3222
BseNI ACTGG 6 cut(s) 76, 1121, 1534, 1967, 2059, 2367
BseRI GAGGAG 4 cut(s) 1232, 1245, 2025, 2345
BsgI GTGCAG 2 cut(s) 1044, 1947
Bsh1236I CGCG 1 cut(s) 1583
BshNI GGYRCC 2 cut(s) 1688, 3614
BsiHKAI GWGCWC 1 cut(s) 1496
BsiHKCI CYCGRG 2 cut(s) 1379, 3393
BsiSI CCGG 4 cut(s) 31, 1497, 2747, 3394
BslFI GGGAC 6 cut(s) 677, 910, 1700, 2527, 2778, 3376
BslI CCNNNNNNNGG 9 cut(s) 236, 278, 1567, 2178, 2441, 2442, 2722, 2950, 3301
BsmFI GGGAC 6 cut(s) 677, 910, 1700, 2527, 2778, 3376
BsmI GAATGC 3 cut(s) 1604, 1794, 1979
Bso31I GGTCTC 2 cut(s) 2070, 2077
BsoBI CYCGRG 2 cut(s) 1379, 3393
Bsp119I TTCGAA 1 cut(s) 1481
Bsp1286I GDGCHC 3 cut(s) 562, 1285, 1496
Bsp19I CCATGG 2 cut(s) 1611, 2436
BspACI CCGC 7 cut(s) 71, 1048, 1273, 1436, 2172, 2327, 3245
BspFNI CGCG 1 cut(s) 1583
BspHI TCATGA 1 cut(s) 2614
BspLI GGNNCC 7 cut(s) 29, 528, 693, 1690, 2515, 3250, 3616
BspMAI CTGCAG 1 cut(s) 2995
BspMI ACCTGC 2 cut(s) 2723, 3154
BspPI GGATC 8 cut(s) 1370, 1446, 1945, 2065, 2547, 2619, 3081, 3489
BspQI GCTCTTC 1 cut(s) 3510
BspT104I TTCGAA 1 cut(s) 1481
BspT107I GGYRCC 2 cut(s) 1688, 3614
BspTI CTTAAG 2 cut(s) 2585, 2596
BspTNI GGTCTC 2 cut(s) 2070, 2077
BsrBI CCGCTC 1 cut(s) 1048
BsrDI GCAATG 1 cut(s) 3222
BsrFI RCCGGY 1 cut(s) 1496
BsrI ACTGG 6 cut(s) 76, 1121, 1534, 1967, 2059, 2367
BssAI RCCGGY 1 cut(s) 1496
BssNI GRCGYC 1 cut(s) 3615
BssSI CACGAG 1 cut(s) 2037
BssT1I CCWWGG 5 cut(s) 516, 1611, 1692, 1881, 2436
Bst2BI CACGAG 1 cut(s) 2037
Bst4CI ACNGT 5 cut(s) 163, 378, 1927, 2651, 2757
Bst6I CTCTTC 2 cut(s) 2795, 3510
BstACI GRCGYC 1 cut(s) 3615
BstAFI CTTAAG 2 cut(s) 2585, 2596
BstAPI GCANNNNNTGC 2 cut(s) 1160, 2468
BstBAI YACGTR 1 cut(s) 2270
BstBI TTCGAA 1 cut(s) 1481
BstC8I GCNNGC 5 cut(s) 265, 627, 1653, 2628, 2971
BstDSI CCRYGG 2 cut(s) 1611, 2436
BstEII GGTNACC 2 cut(s) 281, 2167
BstENI CCTNNNNNAGG 1 cut(s) 276
BstFNI CGCG 1 cut(s) 1583
BstH2I RGCGCY 1 cut(s) 3618
BstHHI GCGC 2 cut(s) 1592, 3617
BstMWI GCNNNNNNNGC 9 cut(s) 1151, 1160, 1433, 1506, 1589, 1661, 2324, 2468, 3271
BstNSI RCATGY 5 cut(s) 405, 417, 1396, 2825, 2912
BstPAI GACNNNNGTC 1 cut(s) 3388
BstPI GGTNACC 2 cut(s) 281, 2167
BstSFI CTRYAG 3 cut(s) 823, 2991, 3033
BstUI CGCG 1 cut(s) 1583
BstV2I GAAGAC 2 cut(s) 2222, 2290
BstX2I RGATCY 8 cut(s) 548, 1438, 1937, 2057, 2410, 2539, 3073, 3481
BstXI CCANNNNNNTGG 4 cut(s) 1104, 1888, 2474, 3485
BstYI RGATCY 8 cut(s) 548, 1438, 1937, 2057, 2410, 2539, 3073, 3481
Bsu36I CCTNAGG 1 cut(s) 1257
BtgI CCRYGG 2 cut(s) 1611, 2436
BtgZI GCGATG 2 cut(s) 606, 2185
BtsI GCAGTG 2 cut(s) 3315, 3498
BtsIMutI CAGTG 6 cut(s) 1163, 1330, 2052, 2301, 3315, 3498
BveI ACCTGC 2 cut(s) 2723, 3154
Cac8I GCNNGC 5 cut(s) 265, 627, 1653, 2628, 2971
CaiI CAGNNNCTG 3 cut(s) 131, 382, 1625
CciI TCATGA 1 cut(s) 2614
CfoI GCGC 2 cut(s) 1592, 3617
Cfr10I RCCGGY 1 cut(s) 1496
Cfr13I GGNCC 9 cut(s) 73, 691, 2113, 2180, 2514, 2624, 3173, 3304, 3425
Cfr9I CCCGGG 1 cut(s) 3393
CseI GACGC 3 cut(s) 597, 1572, 1589
CsiI ACCWGGT 1 cut(s) 3633
Csp6I GTAC 2 cut(s) 573, 3475
CviQI GTAC 2 cut(s) 573, 3475
DinI GGCGCC 1 cut(s) 3616
DraIII CACNNNGTG 1 cut(s) 320
DrdI GACNNNNNNGTC 1 cut(s) 2842
DseDI GACNNNNNNGTC 1 cut(s) 2842
EaeI YGGCCR 2 cut(s) 265, 1740
Eam1104I CTCTTC 2 cut(s) 2795, 3510
EarI CTCTTC 2 cut(s) 2795, 3510
Eco130I CCWWGG 5 cut(s) 516, 1611, 1692, 1881, 2436
Eco147I AGGCCT 1 cut(s) 3146
Eco24I GRGCYC 2 cut(s) 562, 1285
Eco31I GGTCTC 2 cut(s) 2070, 2077
Eco32I GATATC 1 cut(s) 3016
Eco47I GGWCC 5 cut(s) 73, 691, 2113, 2514, 3304
Eco57I CTGAAG 5 cut(s) 108, 504, 1402, 2478, 3143
Eco72I CACGTG 1 cut(s) 2270
Eco81I CCTNAGG 1 cut(s) 1257
Eco88I CYCGRG 2 cut(s) 1379, 3393
Eco91I GGTNACC 2 cut(s) 281, 2167
EcoNI CCTNNNNNAGG 1 cut(s) 276
EcoO109I RGGNCCY 2 cut(s) 691, 2113
EcoO65I GGTNACC 2 cut(s) 281, 2167
EcoRV GATATC 1 cut(s) 3016
EcoT14I CCWWGG 5 cut(s) 516, 1611, 1692, 1881, 2436
EcoT22I ATGCAT 4 cut(s) 1355, 2823, 2910, 3183
EcoT38I GRGCYC 2 cut(s) 562, 1285
EgeI GGCGCC 1 cut(s) 3616
EheI GGCGCC 1 cut(s) 3616
ErhI CCWWGG 5 cut(s) 516, 1611, 1692, 1881, 2436
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 2579, 2611
FaqI GGGAC 6 cut(s) 677, 910, 1700, 2527, 2778, 3376
FauI CCCGC 2 cut(s) 1266, 3238
FauNDI CATATG 2 cut(s) 1464, 3387
FblI GTMKAC 1 cut(s) 1526
FriOI GRGCYC 2 cut(s) 562, 1285
FspBI CTAG 5 cut(s) 177, 332, 1505, 2709, 2901
FspI TGCGCA 1 cut(s) 1591
GlaI GCGC 2 cut(s) 1591, 3616
GsuI CTGGAG 4 cut(s) 209, 690, 2805, 3255
HaeII RGCGCY 1 cut(s) 3618
HapII CCGG 4 cut(s) 31, 1497, 2747, 3394
HgaI GACGC 3 cut(s) 597, 1572, 1589
HhaI GCGC 2 cut(s) 1592, 3617
Hin1I GRCGYC 1 cut(s) 3615
Hin6I GCGC 2 cut(s) 1590, 3615
HinP1I GCGC 2 cut(s) 1590, 3615
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HindIII AAGCTT 2 cut(s) 881, 1026
HpaII CCGG 4 cut(s) 31, 1497, 2747, 3394
HphI GGTGA 7 cut(s) 251, 293, 750, 1652, 2161, 2235, 2424
Hpy166II GTNNAC 3 cut(s) 174, 1402, 1527
Hpy8I GTNNAC 3 cut(s) 174, 1402, 1527
Hpy99I CGWCG 2 cut(s) 227, 613
HpyAV CCTTC 7 cut(s) 296, 814, 822, 1916, 2147, 2773, 3628
HpyCH4III ACNGT 5 cut(s) 163, 378, 1927, 2651, 2757
HpyCH4IV ACGT 4 cut(s) 866, 1077, 1138, 2269
HpyF10VI GCNNNNNNNGC 9 cut(s) 1151, 1160, 1433, 1506, 1589, 1661, 2324, 2468, 3271
HpySE526I ACGT 4 cut(s) 866, 1077, 1138, 2269
Hsp92I GRCGYC 1 cut(s) 3615
HspAI GCGC 2 cut(s) 1590, 3615
KasI GGCGCC 1 cut(s) 3614
LguI GCTCTTC 1 cut(s) 3510
MabI ACCWGGT 1 cut(s) 3633
MaeI CTAG 5 cut(s) 177, 332, 1505, 2709, 2901
MaeII ACGT 4 cut(s) 866, 1077, 1138, 2269
MbiI CCGCTC 1 cut(s) 1048
MfeI CAATTG 4 cut(s) 341, 1634, 2961, 3098
MflI RGATCY 8 cut(s) 548, 1438, 1937, 2057, 2410, 2539, 3073, 3481
MhlI GDGCHC 3 cut(s) 562, 1285, 1496
MlsI TGGCCA 2 cut(s) 267, 1742
MluI ACGCGT 1 cut(s) 1581
MluNI TGGCCA 2 cut(s) 267, 1742
Mly113I GGCGCC 1 cut(s) 3615
MlyI GAGTC 5 cut(s) 122, 137, 179, 1811, 2830
MmeI TCCRAC 5 cut(s) 182, 817, 849, 1315, 1394
Mox20I TGGCCA 2 cut(s) 267, 1742
Mph1103I ATGCAT 4 cut(s) 1355, 2823, 2910, 3183
MroXI GAANNNNTTC 2 cut(s) 525, 3543
MscI TGGCCA 2 cut(s) 267, 1742
MslI CAYNNNNRTG 5 cut(s) 1137, 1395, 2472, 3327, 3438
Msp20I TGGCCA 2 cut(s) 267, 1742
MspA1I CMGCKG 5 cut(s) 263, 1450, 1622, 2174, 2252
MspCI CTTAAG 2 cut(s) 2585, 2596
MspI CCGG 4 cut(s) 31, 1497, 2747, 3394
MunI CAATTG 4 cut(s) 341, 1634, 2961, 3098
Mva1269I GAATGC 3 cut(s) 1604, 1794, 1979
MvnI CGCG 1 cut(s) 1583
MwoI GCNNNNNNNGC 9 cut(s) 1151, 1160, 1433, 1506, 1589, 1661, 2324, 2468, 3271
NarI GGCGCC 1 cut(s) 3615
NciI CCSGG 3 cut(s) 2748, 3394, 3395
NcoI CCATGG 2 cut(s) 1611, 2436
NdeI CATATG 2 cut(s) 1464, 3387
NlaIV GGNNCC 7 cut(s) 29, 528, 693, 1690, 2515, 3250, 3616
NmuCI GTSAC 6 cut(s) 39, 179, 281, 1294, 1577, 2167
NsbI TGCGCA 1 cut(s) 1591
NsiI ATGCAT 4 cut(s) 1355, 2823, 2910, 3183
NspI RCATGY 5 cut(s) 405, 417, 1396, 2825, 2912
NspV TTCGAA 1 cut(s) 1481
OliI CACNNNNGTG 1 cut(s) 1137
PagI TCATGA 1 cut(s) 2614
PceI AGGCCT 1 cut(s) 3146
PciI ACATGT 1 cut(s) 1392
PciSI GCTCTTC 1 cut(s) 3510
PctI GAATGC 3 cut(s) 1604, 1794, 1979
PdmI GAANNNNTTC 2 cut(s) 525, 3543
PfeI GAWTC 8 cut(s) 65, 200, 242, 356, 1616, 2264, 2921, 3022
PflMI CCANNNNNTGG 1 cut(s) 2950
PfoI TCCNGGA 2 cut(s) 667, 2746
PleI GAGTC 5 cut(s) 121, 136, 178, 1811, 2830
PluTI GGCGCC 1 cut(s) 3618
PmaCI CACGTG 1 cut(s) 2270
PmlI CACGTG 1 cut(s) 2270
PpsI GAGTC 5 cut(s) 121, 136, 178, 1811, 2830
Ppu21I YACGTR 1 cut(s) 2270
PpuMI RGGWCCY 2 cut(s) 691, 2113
PscI ACATGT 1 cut(s) 1392
PshAI GACNNNNGTC 1 cut(s) 3388
PshBI ATTAAT 2 cut(s) 2481, 3459
PsiI TTATAA 2 cut(s) 1728, 3281
Psp1406I AACGTT 1 cut(s) 866
Psp5II RGGWCCY 2 cut(s) 691, 2113
PspCI CACGTG 1 cut(s) 2270
PspEI GGTNACC 2 cut(s) 281, 2167
PspN4I GGNNCC 7 cut(s) 29, 528, 693, 1690, 2515, 3250, 3616
PspPI GGNCC 9 cut(s) 73, 691, 2113, 2180, 2514, 2624, 3173, 3304, 3425
PspPPI RGGWCCY 2 cut(s) 691, 2113
PsrI GAACNNNNNNTAC 2 cut(s) 3363, 3395
PstI CTGCAG 1 cut(s) 2995
PstNI CAGNNNCTG 3 cut(s) 131, 382, 1625
PsuI RGATCY 8 cut(s) 548, 1438, 1937, 2057, 2410, 2539, 3073, 3481
PvuII CAGCTG 4 cut(s) 263, 1450, 1622, 2252
RsaI GTAC 2 cut(s) 574, 3476
RsaNI GTAC 2 cut(s) 573, 3475
RseI CAYNNNNRTG 5 cut(s) 1137, 1395, 2472, 3327, 3438
SapI GCTCTTC 1 cut(s) 3510
Sau96I GGNCC 9 cut(s) 73, 691, 2113, 2180, 2514, 2624, 3173, 3304, 3425
SchI GAGTC 5 cut(s) 122, 137, 179, 1811, 2830
SduI GDGCHC 3 cut(s) 562, 1285, 1496
SexAI ACCWGGT 1 cut(s) 3633
SfcI CTRYAG 3 cut(s) 823, 2991, 3033
SfoI GGCGCC 1 cut(s) 3616
SfuI TTCGAA 1 cut(s) 1481
SinI GGWCC 5 cut(s) 73, 691, 2113, 2514, 3304
SmaI CCCGGG 1 cut(s) 3395
SmiMI CAYNNNNRTG 5 cut(s) 1137, 1395, 2472, 3327, 3438
SmlI CTYRAG 4 cut(s) 1442, 2080, 2585, 2596
SmoI CTYRAG 4 cut(s) 1442, 2080, 2585, 2596
SpeI ACTAGT 1 cut(s) 176
SseBI AGGCCT 1 cut(s) 3146
SsiI CCGC 7 cut(s) 71, 1048, 1273, 1436, 2172, 2327, 3245
SspDI GGCGCC 1 cut(s) 3614
SspMI CTAG 5 cut(s) 177, 332, 1505, 2709, 2901
StuI AGGCCT 1 cut(s) 3146
StyI CCWWGG 5 cut(s) 516, 1611, 1692, 1881, 2436
TaaI ACNGT 5 cut(s) 163, 378, 1927, 2651, 2757
TaiI ACGT 4 cut(s) 869, 1080, 1141, 2272
TaqI TCGA 6 cut(s) 14, 116, 225, 1481, 2068, 3508
TfiI GAWTC 8 cut(s) 65, 200, 242, 356, 1616, 2264, 2921, 3022
TscAI CASTG 6 cut(s) 1170, 1330, 2059, 2308, 3322, 3505
TseFI GTSAC 6 cut(s) 39, 179, 281, 1294, 1577, 2167
Tsp45I GTSAC 6 cut(s) 39, 179, 281, 1294, 1577, 2167
TspGWI ACGGA 2 cut(s) 919, 2921
TspMI CCCGGG 1 cut(s) 3393
TspRI CASTG 6 cut(s) 1170, 1330, 2059, 2308, 3322, 3505
Van91I CCANNNNNTGG 1 cut(s) 2950
Vha464I CTTAAG 2 cut(s) 2585, 2596
VpaK11BI GGWCC 5 cut(s) 73, 691, 2113, 2514, 3304
VspI ATTAAT 2 cut(s) 2481, 3459
XagI CCTNNNNNAGG 1 cut(s) 276
XapI RAATTY 6 cut(s) 256, 1038, 1099, 1238, 1266, 2858
XbaI TCTAGA 1 cut(s) 2708
XceI RCATGY 5 cut(s) 405, 417, 1396, 2825, 2912
XcmI CCANNNNNNNNNTGG 2 cut(s) 1101, 1483
XmaI CCCGGG 1 cut(s) 3393
XmiI GTMKAC 1 cut(s) 1526
XmnI GAANNNNTTC 2 cut(s) 525, 3543
XspI CTAG 5 cut(s) 177, 332, 1505, 2709, 2901
Zsp2I ATGCAT 4 cut(s) 1355, 2823, 2910, 3183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.