Rorug04G0113400

mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005851
Physical Location & Seq
Reverse (-)
17831582 .. 17833291
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0113400.1

Sequence Viewer

Length: 801 bp
ATGGGCTTCATGATGGAGGAGCATAATCAGAAGAATTTTGAAGAGTCCAACTCAGGACCAAAAGGGGTACATTTGGTGGATTCGGCTAATATGGATGTCGCATGTTTAGAAACAGAAATTGGGAGGTTGACATACACAGTTGATTGCATGGAACCCAAGCTGGAGGATTTAAGATTACATGTATTTAACTTAGAACATGCGATGCTTGAAATATTGAATGGTGATTGTATTGAGGAAATTGTTTCTGAGGTTGTCGAAATTGTGAGTTTAAAGGCCAATAAGACTCATAACCTGTTGAGTCGAACTGTTGGTACAACCTTTGTGGAGCAAATGGATGAGGATTTGTTTGGTGAACATGGGAGAAGCAGTCAAGACCCACTAAAAAAATTGACCAAGTCACCAGTGCTGGATGGCTATGCTGATGAGGGACCCCATGAGGAACTCATACATGATGAGCACAAACCTGACTCCGTTACGAGGGTTAAACAGCAGCCACAAAAGACTCTTCGTTCTCGAAAGCAACAAAGGAGTAAACCCAAAGCCCCAATTTTTGCAATAAGCGGTCTCATCACACCTGAGAATGCACATCTCATGAAATTTTTATTTAGGAAGAATGGAATTGGAGAAGACAAGTGGAATGAAGTAGTAGCTAGTTATGGTGACTACGCCGTTACTAGAAAGGAATTTCAGTGTCTCTCTCCAGCAACTCCACTATCTTGCAAGGTCATAAACATATCTGCGGCGTATTTGAATGAGCCGGAGTCAGAACATTGGTTTCTCCCTTCCTTTTTTGGGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU CLU_N DUF727 TPR_10 TPR_12 eIF3_p135

Protein Analysis

266

Amino Acids

30.08

Weight (kDa)

5.33

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 561, 740
AcsI RAATTY 3 cut(s) 34, 596, 683
AfaI GTAC 2 cut(s) 69, 313
AfiI CCNNNNNNNGG 2 cut(s) 477, 792
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 4 cut(s) 41, 209, 217, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AluBI AGCT 2 cut(s) 160, 650
AluI AGCT 2 cut(s) 160, 650
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 2 cut(s) 569, 698
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 490
ApoI RAATTY 3 cut(s) 34, 596, 683
AspS9I GGNCC 2 cut(s) 56, 428
AsuHPI GGTGA 4 cut(s) 233, 362, 390, 671
AvaII GGWCC 2 cut(s) 56, 428
BbsI GAAGAC 1 cut(s) 633
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 1 cut(s) 502
BccI CCATC 2 cut(s) 7, 404
BceAI ACGGC 1 cut(s) 653
BcoDI GTCTC 2 cut(s) 569, 698
BfaI CTAG 2 cut(s) 651, 675
BisI GCNGC 2 cut(s) 491, 741
BlsI GCNGC 2 cut(s) 492, 742
Bme18I GGWCC 2 cut(s) 56, 428
BmgT120I GGNCC 2 cut(s) 56, 428
BmiI GGNNCC 3 cut(s) 153, 429, 430
BmsI GCATC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 633
BplI GAGNNNNNCTC 2 cut(s) 35, 67
BpmI CTGGAG 2 cut(s) 182, 684
BsaI GGTCTC 1 cut(s) 569
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 2 cut(s) 477, 792
Bse1I ACTGG 1 cut(s) 401
BseGI GGATG 3 cut(s) 100, 340, 415
BseLI CCNNNNNNNGG 2 cut(s) 477, 792
BseMII CTCAG 3 cut(s) 66, 237, 567
BseNI ACTGG 1 cut(s) 401
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 502
BshFI GGCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 459
BsiSI CCGG 1 cut(s) 758
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 2 cut(s) 477, 792
BsmAI GTCTC 2 cut(s) 569, 698
BsmFI GGGAC 1 cut(s) 441
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 569
Bsp1286I GDGCHC 1 cut(s) 459
BspACI CCGC 2 cut(s) 561, 740
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 3 cut(s) 65, 238, 568
BspHI TCATGA 2 cut(s) 9, 591
BspLI GGNNCC 3 cut(s) 153, 429, 430
BspTNI GGTCTC 1 cut(s) 569
BsrI ACTGG 1 cut(s) 401
Bst4CI ACNGT 2 cut(s) 139, 307
Bst6I CTCTTC 2 cut(s) 36, 510
BstDEI CTNAG 4 cut(s) 52, 190, 246, 576
BstF5I GGATG 3 cut(s) 100, 340, 415
BstMAI GTCTC 2 cut(s) 569, 698
BstNSI RCATGY 3 cut(s) 105, 182, 200
BstV1I GCAGC 1 cut(s) 502
BstV2I GAAGAC 1 cut(s) 633
BsuRI GGCC 1 cut(s) 275
BtgZI GCGATG 1 cut(s) 215
BtsCI GGATG 3 cut(s) 100, 340, 415
BtsIMutI CAGTG 2 cut(s) 408, 695
CciI TCATGA 2 cut(s) 9, 591
Cfr13I GGNCC 2 cut(s) 56, 428
Csp6I GTAC 2 cut(s) 68, 312
CspCI CAANNNNNGTGG 2 cut(s) 303, 338
CviAII CATG 9 cut(s) 10, 102, 148, 179, 197, 356, 434, 449, 592
CviJI RGCY 9 cut(s) 6, 86, 160, 275, 414, 493, 542, 650, 757
CviKI_1 RGCY 9 cut(s) 6, 86, 160, 275, 414, 493, 542, 650, 757
CviQI GTAC 2 cut(s) 68, 312
DdeI CTNAG 4 cut(s) 52, 190, 246, 576
DraI TTTAAA 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 36, 510
EarI CTCTTC 2 cut(s) 36, 510
Eco31I GGTCTC 1 cut(s) 569
Eco47I GGWCC 2 cut(s) 56, 428
EcoO109I RGGNCCY 1 cut(s) 428
FaeI CATG 9 cut(s) 13, 105, 151, 182, 200, 359, 437, 452, 595
FaqI GGGAC 1 cut(s) 441
FatI CATG 9 cut(s) 9, 101, 147, 178, 196, 355, 433, 448, 591
Fnu4HI GCNGC 2 cut(s) 491, 741
FokI GGATG 3 cut(s) 107, 347, 422
Fsp4HI GCNGC 2 cut(s) 491, 741
FspBI CTAG 2 cut(s) 651, 675
GluI GCNGC 2 cut(s) 491, 741
GsuI CTGGAG 2 cut(s) 182, 684
HaeIII GGCC 1 cut(s) 275
HapII CCGG 1 cut(s) 758
Hin1II CATG 9 cut(s) 13, 105, 151, 182, 200, 359, 437, 452, 595
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 7 cut(s) 44, 80, 283, 298, 467, 502, 761
HpaII CCGG 1 cut(s) 758
HphI GGTGA 4 cut(s) 233, 362, 390, 671
Hpy166II GTNNAC 3 cut(s) 129, 353, 533
Hpy188I TCNGA 3 cut(s) 30, 247, 766
Hpy188III TCNNGA 5 cut(s) 10, 54, 371, 513, 592
Hpy8I GTNNAC 3 cut(s) 129, 353, 533
HpyAV CCTTC 1 cut(s) 792
HpyCH4III ACNGT 2 cut(s) 139, 307
HpyCH4V TGCA 4 cut(s) 147, 554, 584, 720
HpyF3I CTNAG 4 cut(s) 52, 190, 246, 576
Hsp92II CATG 9 cut(s) 13, 105, 151, 182, 200, 359, 437, 452, 595
KflI GGGWCCC 1 cut(s) 428
LmnI GCTCC 2 cut(s) 19, 325
LpnPI CCDG 9 cut(s) 39, 146, 305, 392, 414, 477, 588, 714, 771
Lsp1109I GCAGC 1 cut(s) 502
LweI GCATC 1 cut(s) 192
MaeI CTAG 2 cut(s) 651, 675
MaeIII GTNAC 4 cut(s) 396, 472, 659, 670
MboII GAAGA 5 cut(s) 43, 53, 497, 622, 638
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 9 cut(s) 34, 117, 237, 258, 386, 546, 596, 618, 683
MlyI GAGTC 6 cut(s) 53, 277, 307, 461, 496, 770
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 9 cut(s) 10, 117, 157, 226, 241, 331, 418, 430, 471
MseI TTAA 4 cut(s) 170, 186, 269, 483
MspI CCGG 1 cut(s) 758
Mva1269I GAATGC 1 cut(s) 586
NlaIII CATG 9 cut(s) 13, 105, 151, 182, 200, 359, 437, 452, 595
NlaIV GGNNCC 3 cut(s) 153, 429, 430
NmuCI GTSAC 2 cut(s) 396, 659
NspI RCATGY 3 cut(s) 105, 182, 200
PagI TCATGA 2 cut(s) 9, 591
PciI ACATGT 1 cut(s) 178
PctI GAATGC 1 cut(s) 586
PfeI GAWTC 1 cut(s) 80
PflFI GACNNNGTC 1 cut(s) 394
PkrI GCNGC 2 cut(s) 492, 742
PleI GAGTC 6 cut(s) 52, 277, 306, 461, 496, 769
PpsI GAGTC 6 cut(s) 52, 277, 306, 461, 496, 769
PpuMI RGGWCCY 1 cut(s) 428
PscI ACATGT 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 428
PspN4I GGNNCC 3 cut(s) 153, 429, 430
PspPI GGNCC 2 cut(s) 56, 428
PspPPI RGGWCCY 1 cut(s) 428
PsrI GAACNNNNNNTAC 2 cut(s) 295, 327
PsyI GACNNNGTC 1 cut(s) 394
RsaI GTAC 2 cut(s) 69, 313
RsaNI GTAC 2 cut(s) 68, 312
SaqAI TTAA 4 cut(s) 170, 186, 269, 483
SatI GCNGC 2 cut(s) 491, 741
Sau96I GGNCC 2 cut(s) 56, 428
SchI GAGTC 6 cut(s) 53, 277, 307, 461, 496, 770
SduI GDGCHC 1 cut(s) 459
SetI ASST 9 cut(s) 128, 162, 252, 294, 320, 466, 577, 652, 726
SfaNI GCATC 1 cut(s) 192
SinI GGWCC 2 cut(s) 56, 428
Sse9I AATT 9 cut(s) 34, 117, 237, 258, 386, 546, 596, 618, 683
SsiI CCGC 2 cut(s) 561, 740
SspI AATATT 1 cut(s) 213
SspMI CTAG 2 cut(s) 651, 675
TaaI ACNGT 2 cut(s) 139, 307
TaqI TCGA 3 cut(s) 255, 301, 514
TasI AATT 9 cut(s) 34, 117, 237, 258, 386, 546, 596, 618, 683
TauI GCSGC 1 cut(s) 743
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 4 cut(s) 170, 186, 269, 483
Tru9I TTAA 4 cut(s) 170, 186, 269, 483
TscAI CASTG 2 cut(s) 408, 695
TseFI GTSAC 2 cut(s) 396, 659
TseI GCWGC 1 cut(s) 490
Tsp45I GTSAC 2 cut(s) 396, 659
TspDTI ATGAA 2 cut(s) 608, 654
TspGWI ACGGA 1 cut(s) 460
TspRI CASTG 2 cut(s) 408, 695
Tth111I GACNNNGTC 1 cut(s) 394
VpaK11BI GGWCC 2 cut(s) 56, 428
XapI RAATTY 3 cut(s) 34, 596, 683
XceI RCATGY 3 cut(s) 105, 182, 200
XspI CTAG 2 cut(s) 651, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.