Rroxscaffold_5G00355410

mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0005851
Physical Location & Seq
Forward (+)
34066179 .. 34080482
14304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00355410.1

Sequence Viewer

Length: 4290 bp
ATGGCTGGAAAATCAAACAAAGGGAGGAACCGGAGAGGGTCACAGAATGCTGCAAGTTCATCTGATACGGTGGTCCAGTCTGATGCTCCTGTGAAAGACAACTCAAAAGATGAGTCGAGTGCTTCAGAGTCCGTCAAGGCGAATGCTAATGGTGTTCCAACTGTGCAAGAGTCAACTAGTGACAAGCTGGAGGTAAAGGATTCTGAAACTAATGTTGCAGTCGTCGAACCAAAGCAAGGTGAATCTGAAACAGAAAATTCAGCTGGCCAACCTAAGCAAGGTGACCTTCATCTTTACCCTGTCTCTGTCAAGACACAAAGTGGCGAGAAGCTAGAACTACAATTGAACCCAGGAGATTCTGTTATGGATATAAGACAGTTTCTGCTTGATGCTCCTGAGACATGCTTCTTTACATGCTATGACTTGTTGCTACACACCAAAGATGGCTCAACCTATCATTTGGAAGATTTTAATGAAATCTCTGAAGTTGCTGACATTACTGTTGGTGGATGCTCCTTGGAAATGGTTCCAGCTTTATATGATGATAGATCTATAAGGGCTCATGTTCATCGTACCAGAGAATTACTTTCACTTTCCACACTTCATGCGTCGCTGTCAACATCGCTTGCATTACAATATGAGACAGCTCAGAACAAAGTAGCAACTCCTGGAGATACCATCAAAACTGAGGTCCCTGAGCTTGATGGTTTGGGTTTTATGGAGGATGTTGCCGGTGCATTGAGTAATTTGCTCTCATCACCCTCAAAAGAGATCAAATGCGTAGAGAGTATTGTGTTTTCATCCTTCAATCCTCCACCAAGCTATAGAAGGCTGGTCGGAGATTTGATTTATCTGGATGTCGTAACGTTGGAGGGTAATAAGCTTTGTATTACGGGGACTACGAAAATGTTTTATGTCAATTCAAGCTCCGTAAATAATACCCTTAATCCCAGGCCAAGCAAAAGTTATCCAGAAGCGACCACACTTGTCGGGATTTTGCAAAAGATCAGCTCTAAGTTCCAAAAAGCTTTTCGTGAAATTTTGGAGCGGAGAGCTTCTGCACATCCTTTTGAAAATGTGCAATCTCTGTTACCACCAAATTCATGGTTAGGGTTACATCCAGTTCCAGATCACAAACGTGATGCAGCCAGAGCAGAGGATGCACTGACCCTCTCTTATGGTAGTGAGCTAATTGGTATGCAAAGGGATTGGAATGAGGAGTTGCAATCTTGTAGGGAATTTCCACATGCAACTCCTCAGGAAAGAATTTTGCGGGATAGGGCTCTCTACAAAGTGACATCAGACTTCGTGGATGCAGCAATCAGTGGTGCTGTTGGAGTTATCAGCAGATGCATACCACCTATAAATCCAACTGATCCCGAGTGCTTCCACATGTATGTTCACAATAACATCTTCTTCAGTTTCGCTGTTGATGCGGATCTTGAGCAGCTGTCTAAGAACCATATGTCAGTTTCCAATTCGAAAATGGGGAGCACCGGCTCTCTAGGCAGTTCTTCTGAAAAGTCTACTGGCAGTTTGTTGCATAGAGAGAGTGAAATCCCCAATGGGGAAAAATGTGACGCGTCATGCGCAGGGGAATGCCACGATGCCATGGAATCAGCTGCTGAGACACAATTGGGTGAGACTGAGCAGGCTACTTATGCTTCTGCAAATAATGATTTGAAAGGCACCAAGGCATACCAGGAAGCTGATGTCCCTGGACTTTATAATCTTGCTATGGCCATAATTGATTACAGAGGCCATAGAGTAGTAGCTCAGAGTGTTTTGCCAGGCATTCTTCAAGGGGATAAATCAGACTCTCTTTTATATGGTTCTGTTGATAATGGGAAAAAGATATGCTGGAATGAGGATTTTCATTCCAAGGTGGTGGAGGCTGCTAAACGCCTTCATTTGAAAGAACACACAGTCCTTGATGGATCTGGAAATGTTTTCAAGTTAGCTGCACCAGTCGAATGCAAGGGAATTGTTGGTAGTGATGACAGGCATTATCTTCTTGACTTGATGAGAGTAACTCCTCGTGATGCAAACTTCACTGGATCTGGGTCTCGATTTTGTATCTTGAGACCAGAACTAATTACTTCCTATTGCCAGAAGGTCCTTGATGCAGAGAAATCAAAATCGAAGTCTAAATGTGAAGGAGAGGCTCAGGTCACCACTGATGGGCCAAACGATAACCAGGACATCGCAGAAAAAGAGAAGACCATTGATGCACAAGAAATTGTCTCACCACCAGCTGAAAGCTCTGAATCACGTGAGGAAACTCTTTTCAACCCTAATGTCTTCACTGAGTTTAAGTTGGCTGGAAATGCGGAGGAGATAGCAACAGATGAAGAAAATGTGAGGAAAGCGAGTTTGTATCTTACTGAGGTTGTTCTTCCTAAGTTCATACAAGATCTTTGCACACTTGAAGTATCACCCATGGATGGGCAGACACTAACTGAAGCACTCCATGCTCATGGAATTAATGTTCGTTATATTGGAAAAGTGGCTGATGGGACCAGGCATTTACCTCATCTTTGGGATCTTTGTTCTAATGAGATTGTGGTTAGATCAGCCAAGCACATTCTTAAGGATGTCTTAAGAGATACAGAGGATCATGATATGGGGCCTGCAATCTGCCATTTCTTCAACTGTTTTTTCGGAAGCTATCAAGCTGTTGGCTCAAAAGTAGCAGCTAATAGTTCTCAGTCTAGAACCCCCAAAAAAGAACAAGCAGGTCATCAATCTCCGGGAAAACGGTCAAAGGGACAAGGAAGATGGAAGGCTGGAGCTTCTACAAGGAAGAGTGTATCTTCATATATGCATGTTAGCTCAGAGACTCTACGGTCTGACATTCAAGAATTTGCCAAACTCAAATATGAGTTTGGGTTGCCAAAGGATGCTAGGATGCATGTAAAGAAAGATTCGGTTATCCGTAATCTTTGCCAAAAGGTGGGCATTACAATTGCAGCTCGCAGATATGATCTGAAATCTGCAGCACCTTTTGAAATATCAGATATCTTGAATCTTCAACCTGTAGTGAAACACTCTGTTCCTGTTTGTTCAGAAGCTAAGGATCTTGTGGAAACAGGGAAAATCCAATTGGCTGAGGGAATGTTGAGTGAAGCCTACACATTATTTTCCGAGGCCTTTTCCATACTTCAGCAGGTTACAGGCCCAATGCATCGGGAGGTTGCTAACTGCTGTCGGTATCTTGCAATGGTTCTATATCATGCTGGAGACATGGCGGGAGCCATAATGCAACAGCACAAGGAGCTAATTATAAACGAGCGTTGCCTGGGTTTGGACCACCCTGACACTGCTCACAGCTATGGGAATATGGCTCTTTTCTATCATGGACTTAACCAAACAGAACTCGCCTTACGACATATGTCCCGGGCATTGCTCCTGTTAAGTTTGTCATCTGGCCCAGATCATCCTGATGTCGCAGCAACATTCATTAATGTTGCTATGATGTACCAGGATCTTGGGAAGATGGATACTGCTCTTCGATATTTGCAAGAGGCTTTGAAAAAGAATGAAAGGCTTCTGGGCGAGGAACATATCCAAACTGCTGTATGCTATCATGCACTTGCTATTGCATTTAATTGTATGGGCGCCTTCAAGCTCTCCCACCAGCATGAGAAGAAAACTTATGATATACTTGTCAAACAACTGGGTGAGGAGGATTCGAGGACACGTGACTCTCAAAACTGGATGAAGACATTTAAGTTGCGCGAGCAACAGATGAATGCACAAAAGCAAAAAGGTCAAGCTTTGAATGCCGCTTCAGCTCAAAAGGCAATCGACATGTTAAAGGCCAATCCTGACTTGATGCAGGCATTCCAATCTGCTGCTATAGCCGGCGGGTCTGGGAGTTCCAACGCTTCTGTCAACAAATCTCTTAATGCTGCTGCAATAATGGGCGAAACTCTTCCCCGAGGGAGGGGAGTTGATGAGAGGGCTGCACGAGCAGCAGCCGAAATCAGGAAGAAGGCAGCAGCAAGGGGCCTCTTAATACGTCAACACGGTGTTCCGGTCCAAGCTTTGCCTCCACTGACTCATCTCCTCAATATCATGAGTGCCGCAGGTGGGTCCCCAGATTCAGTGGAAAATGGAGAAACCAATGGAGCCAAGGAAGCCAACAACCATCCTTCACATGGCCCAGCAGATGCGAAAACTAACCAACCATCATTAGAGCCGGAAGTTCAACCTCCAGTTGGGTTGGGGAGAGGCTTAGCAGCACTAGATGGCAAGAAACAAAAGTCAAAAGCCAAAGCTGCATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU CLU_N DUF727 TPR_10 TPR_12 eIF3_p135

Protein Analysis

1429

Amino Acids

156.05

Weight (kDa)

6.01

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLU_N PF15044 119 - 195 3e-14 Mitochondrial function, CLU-N-term
CLU PF13236 403 - 684 2.6e-74 Clustered mitochondria
eIF3_p135 PF12807 811 - 995 2.1e-46 Translation initiation factor eIF3 subunit 135
TPR_12 PF13424 1072 - 1135 1.2e-08 Tetratricopeptide repeat
TPR_NPHP3 PF24885 1108 - 1229 1.6e-12 Nephrocystin-3 TPR domain
TPR_12 PF13424 1111 - 1178 1.1e-11 Tetratricopeptide repeat
TPR_12 PF13424 1148 - 1221 6.2e-14 Tetratricopeptide repeat
TPR_10 PF13374 1149 - 1189 1.1e-08 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1728, 3284
AarI CACCTGC 1 cut(s) 4079
AasI GACNNNNNNGTC 1 cut(s) 2845
Acc16I TGCGCA 1 cut(s) 1591
Acc36I ACCTGC 3 cut(s) 2726, 3157, 4079
AccB1I GGYRCC 2 cut(s) 1688, 3617
AccB7I CCANNNNNTGG 1 cut(s) 2953
AccBSI CCGCTC 1 cut(s) 1048
AccI GTMKAC 1 cut(s) 1526
AccII CGCG 2 cut(s) 1583, 3738
AciI CCGC 8 cut(s) 1048, 1273, 1436, 2330, 3248, 3786, 3867, 4086
AclI AACGTT 1 cut(s) 866
AclWI GGATC 8 cut(s) 1370, 1446, 1945, 2065, 2550, 2622, 3084, 3492
AcoI YGGCCR 2 cut(s) 265, 1740
AcsI RAATTY 6 cut(s) 256, 1038, 1099, 1238, 1266, 2861
AcuI CTGAAG 6 cut(s) 108, 504, 1402, 2481, 3146, 3774
AcvI CACGTG 2 cut(s) 2273, 3701
AcyI GRCGYC 1 cut(s) 3618
AdeI CACNNNGTG 1 cut(s) 320
AfaI GTAC 2 cut(s) 574, 3479
AflII CTTAAG 2 cut(s) 2588, 2599
AflIII ACRYGT 4 cut(s) 1392, 1581, 3698, 3810
AhlI ACTAGT 1 cut(s) 176
AjuI GAANNNNNNNTTGG 4 cut(s) 1014, 1046, 3086, 3118
AleI CACNNNNGTG 1 cut(s) 1137
AloI GAACNNNNNNTCC 4 cut(s) 1911, 1943, 2472, 2504
Alw21I GWGCWC 1 cut(s) 1496
AlwI GGATC 8 cut(s) 1370, 1446, 1945, 2065, 2550, 2622, 3084, 3492
AlwNI CAGNNNCTG 2 cut(s) 382, 1625
Ama87I CYCGRG 3 cut(s) 1379, 3396, 3939
ApoI RAATTY 6 cut(s) 256, 1038, 1099, 1238, 1266, 2861
ArsI GACNNNNNNTTYG 6 cut(s) 98, 130, 675, 707, 2129, 2161
AseI ATTAAT 2 cut(s) 2484, 3462
Asp700I GAANNNNTTC 3 cut(s) 525, 3546, 3933
AspLEI GCGC 3 cut(s) 1592, 3620, 3738
AsuC2I CCSGG 3 cut(s) 2751, 3397, 3398
AsuHPI GGTGA 8 cut(s) 251, 293, 750, 1652, 2164, 2238, 2427, 3692
AsuII TTCGAA 1 cut(s) 1481
AvaI CYCGRG 3 cut(s) 1379, 3396, 3939
AvaII GGWCC 7 cut(s) 73, 691, 2116, 2517, 3307, 4039, 4095
AxyI CCTNAGG 1 cut(s) 1257
BaeI ACNNNNGTAYC 2 cut(s) 57, 90
BalI TGGCCA 2 cut(s) 267, 1742
BanI GGYRCC 2 cut(s) 1688, 3617
BanII GRGCYC 2 cut(s) 562, 1285
BauI CACGAG 2 cut(s) 2037, 3969
BbrPI CACGTG 2 cut(s) 2273, 3701
BbsI GAAGAC 3 cut(s) 2225, 2293, 3728
Bbv12I GWGCWC 1 cut(s) 1496
BbvCI CCTCAGC 1 cut(s) 3108
BciVI GTATCC 1 cut(s) 3493
BcnI CCSGG 3 cut(s) 2751, 3397, 3398
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 6 cut(s) 177, 332, 1505, 2712, 2904, 4247
BfmI CTRYAG 4 cut(s) 823, 2994, 3036, 3858
BfoI RGCGCY 1 cut(s) 3621
BfrI CTTAAG 2 cut(s) 2588, 2599
BfuAI ACCTGC 3 cut(s) 2726, 3157, 4079
BfuI GTATCC 1 cut(s) 3493
BglII AGATCT 2 cut(s) 548, 2413
BlpI GCTNAGC 1 cut(s) 4237
Bme18I GGWCC 7 cut(s) 73, 691, 2116, 2517, 3307, 4039, 4095
BmeT110I CYCGRG 3 cut(s) 1379, 3396, 3939
BmrI ACTGGG 1 cut(s) 3686
BmuI ACTGGG 1 cut(s) 3686
BoxI GACNNNNGTC 1 cut(s) 3391
BpiI GAAGAC 3 cut(s) 2225, 2293, 3728
BplI GAGNNNNNCTC 2 cut(s) 2017, 2049
BpmI CTGGAG 5 cut(s) 209, 690, 2808, 3258, 4200
Bpu10I CCTNAGC 5 cut(s) 273, 696, 2166, 3072, 3108
Bpu1102I GCTNAGC 1 cut(s) 4237
Bpu14I TTCGAA 1 cut(s) 1481
BpuEI CTTGAG 2 cut(s) 1463, 2101
BpuMI CCSGG 3 cut(s) 2751, 3397, 3398
BsaAI YACGTR 2 cut(s) 2273, 3701
BsaBI GATNNNNATC 1 cut(s) 1437
BsaHI GRCGYC 1 cut(s) 3618
BsaI GGTCTC 2 cut(s) 2070, 2077
BsaWI WCCGGW 2 cut(s) 30, 4036
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bse118I RCCGGY 3 cut(s) 731, 1496, 3863
Bse1I ACTGG 8 cut(s) 76, 1121, 1534, 1967, 2059, 3681, 3719, 4217
Bse21I CCTNAGG 1 cut(s) 1257
Bse3DI GCAATG 2 cut(s) 3225, 3401
Bse8I GATNNNNATC 1 cut(s) 1437
BseJI GATNNNNATC 1 cut(s) 1437
BseMI GCAATG 2 cut(s) 3225, 3401
BseNI ACTGG 8 cut(s) 76, 1121, 1534, 1967, 2059, 3681, 3719, 4217
BseRI GAGGAG 6 cut(s) 1232, 1245, 2025, 2348, 3698, 4058
BseYI CCCAGC 1 cut(s) 4165
BsgI GTGCAG 3 cut(s) 1044, 1947, 3951
Bsh1236I CGCG 2 cut(s) 1583, 3738
BshNI GGYRCC 2 cut(s) 1688, 3617
BsiHKAI GWGCWC 1 cut(s) 1496
BsiHKCI CYCGRG 3 cut(s) 1379, 3396, 3939
BsiSI CCGG 8 cut(s) 31, 732, 1497, 2750, 3397, 3864, 4037, 4202
BslFI GGGAC 7 cut(s) 677, 910, 1700, 2530, 2781, 3379, 4081
BsmFI GGGAC 7 cut(s) 677, 910, 1700, 2530, 2781, 3379, 4081
BsmI GAATGC 8 cut(s) 52, 148, 1604, 1794, 1979, 3757, 3787, 3842
Bso31I GGTCTC 2 cut(s) 2070, 2077
BsoBI CYCGRG 3 cut(s) 1379, 3396, 3939
Bsp119I TTCGAA 1 cut(s) 1481
Bsp1286I GDGCHC 3 cut(s) 562, 1285, 1496
Bsp1720I GCTNAGC 1 cut(s) 4237
Bsp19I CCATGG 2 cut(s) 1611, 2439
BspACI CCGC 8 cut(s) 1048, 1273, 1436, 2330, 3248, 3786, 3867, 4086
BspFNI CGCG 2 cut(s) 1583, 3738
BspHI TCATGA 2 cut(s) 2617, 4077
BspMAI CTGCAG 1 cut(s) 2998
BspMI ACCTGC 3 cut(s) 2726, 3157, 4079
BspPI GGATC 8 cut(s) 1370, 1446, 1945, 2065, 2550, 2622, 3084, 3492
BspQI GCTCTTC 1 cut(s) 3513
BspT104I TTCGAA 1 cut(s) 1481
BspT107I GGYRCC 2 cut(s) 1688, 3617
BspTI CTTAAG 2 cut(s) 2588, 2599
BspTNI GGTCTC 2 cut(s) 2070, 2077
BsrBI CCGCTC 1 cut(s) 1048
BsrDI GCAATG 2 cut(s) 3225, 3401
BsrFI RCCGGY 3 cut(s) 731, 1496, 3863
BsrI ACTGG 8 cut(s) 76, 1121, 1534, 1967, 2059, 3681, 3719, 4217
BssAI RCCGGY 3 cut(s) 731, 1496, 3863
BssNI GRCGYC 1 cut(s) 3618
BssSI CACGAG 2 cut(s) 2037, 3969
BssT1I CCWWGG 6 cut(s) 516, 1611, 1692, 1881, 2439, 4134
Bst2BI CACGAG 2 cut(s) 2037, 3969
Bst4CI ACNGT 9 cut(s) 70, 163, 378, 502, 1927, 2654, 2760, 2847, 4031
Bst6I CTCTTC 3 cut(s) 2798, 3513, 3939
BstACI GRCGYC 1 cut(s) 3618
BstAFI CTTAAG 2 cut(s) 2588, 2599
BstAPI GCANNNNNTGC 2 cut(s) 1160, 2471
BstBAI YACGTR 2 cut(s) 2273, 3701
BstBI TTCGAA 1 cut(s) 1481
BstC8I GCNNGC 8 cut(s) 265, 627, 1653, 2631, 2974, 3740, 3840, 3865
BstDSI CCRYGG 2 cut(s) 1611, 2439
BstEII GGTNACC 2 cut(s) 281, 2170
BstENI CCTNNNNNAGG 1 cut(s) 276
BstFNI CGCG 2 cut(s) 1583, 3738
BstH2I RGCGCY 1 cut(s) 3621
BstHHI GCGC 3 cut(s) 1592, 3620, 3738
BstNSI RCATGY 7 cut(s) 405, 417, 1250, 1396, 2828, 2915, 3814
BstPAI GACNNNNGTC 1 cut(s) 3391
BstPI GGTNACC 2 cut(s) 281, 2170
BstSFI CTRYAG 4 cut(s) 823, 2994, 3036, 3858
BstUI CGCG 2 cut(s) 1583, 3738
BstV2I GAAGAC 3 cut(s) 2225, 2293, 3728
BstX2I RGATCY 8 cut(s) 548, 1438, 1937, 2057, 2413, 2542, 3076, 3484
BstXI CCANNNNNNTGG 4 cut(s) 1104, 1888, 2477, 3488
BstYI RGATCY 8 cut(s) 548, 1438, 1937, 2057, 2413, 2542, 3076, 3484
Bsu36I CCTNAGG 1 cut(s) 1257
BsuI GTATCC 1 cut(s) 3493
BtgI CCRYGG 2 cut(s) 1611, 2439
BtgZI GCGATG 2 cut(s) 606, 2188
BtsI GCAGTG 1 cut(s) 3318
BtsIMutI CAGTG 8 cut(s) 1163, 1330, 2052, 2175, 2304, 3318, 4055, 4113
BveI ACCTGC 3 cut(s) 2726, 3157, 4079
Cac8I GCNNGC 8 cut(s) 265, 627, 1653, 2631, 2974, 3740, 3840, 3865
CaiI CAGNNNCTG 2 cut(s) 382, 1625
CciI TCATGA 2 cut(s) 2617, 4077
CfoI GCGC 3 cut(s) 1592, 3620, 3738
Cfr10I RCCGGY 3 cut(s) 731, 1496, 3863
Cfr9I CCCGGG 1 cut(s) 3396
CseI GACGC 3 cut(s) 597, 1572, 1589
Csp6I GTAC 2 cut(s) 573, 3478
CviQI GTAC 2 cut(s) 573, 3478
DinI GGCGCC 1 cut(s) 3619
DraIII CACNNNGTG 1 cut(s) 320
DrdI GACNNNNNNGTC 1 cut(s) 2845
DseDI GACNNNNNNGTC 1 cut(s) 2845
EaeI YGGCCR 2 cut(s) 265, 1740
Eam1104I CTCTTC 3 cut(s) 2798, 3513, 3939
EarI CTCTTC 3 cut(s) 2798, 3513, 3939
Eco130I CCWWGG 6 cut(s) 516, 1611, 1692, 1881, 2439, 4134
Eco147I AGGCCT 1 cut(s) 3149
Eco24I GRGCYC 2 cut(s) 562, 1285
Eco31I GGTCTC 2 cut(s) 2070, 2077
Eco32I GATATC 1 cut(s) 3019
Eco47I GGWCC 7 cut(s) 73, 691, 2116, 2517, 3307, 4039, 4095
Eco57I CTGAAG 6 cut(s) 108, 504, 1402, 2481, 3146, 3774
Eco72I CACGTG 2 cut(s) 2273, 3701
Eco81I CCTNAGG 1 cut(s) 1257
Eco88I CYCGRG 3 cut(s) 1379, 3396, 3939
Eco91I GGTNACC 2 cut(s) 281, 2170
EcoNI CCTNNNNNAGG 1 cut(s) 276
EcoO109I RGGNCCY 5 cut(s) 691, 2116, 2627, 4009, 4095
EcoO65I GGTNACC 2 cut(s) 281, 2170
EcoRV GATATC 1 cut(s) 3019
EcoT14I CCWWGG 6 cut(s) 516, 1611, 1692, 1881, 2439, 4134
EcoT22I ATGCAT 4 cut(s) 1355, 2826, 2913, 3186
EcoT38I GRGCYC 2 cut(s) 562, 1285
EgeI GGCGCC 1 cut(s) 3619
EheI GGCGCC 1 cut(s) 3619
ErhI CCWWGG 6 cut(s) 516, 1611, 1692, 1881, 2439, 4134
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 2582, 2614
FaqI GGGAC 7 cut(s) 677, 910, 1700, 2530, 2781, 3379, 4081
FauI CCCGC 3 cut(s) 1266, 3241, 3860
FauNDI CATATG 2 cut(s) 1464, 3390
FblI GTMKAC 1 cut(s) 1526
FriOI GRGCYC 2 cut(s) 562, 1285
FspBI CTAG 6 cut(s) 177, 332, 1505, 2712, 2904, 4247
FspI TGCGCA 1 cut(s) 1591
GlaI GCGC 3 cut(s) 1591, 3619, 3737
GsaI CCCAGC 1 cut(s) 4169
GsuI CTGGAG 5 cut(s) 209, 690, 2808, 3258, 4200
HaeII RGCGCY 1 cut(s) 3621
HapII CCGG 8 cut(s) 31, 732, 1497, 2750, 3397, 3864, 4037, 4202
HgaI GACGC 3 cut(s) 597, 1572, 1589
HhaI GCGC 3 cut(s) 1592, 3620, 3738
Hin1I GRCGYC 1 cut(s) 3618
Hin6I GCGC 3 cut(s) 1590, 3618, 3736
HinP1I GCGC 3 cut(s) 1590, 3618, 3736
HincII GTYRAC 4 cut(s) 174, 618, 3895, 4025
HindII GTYRAC 4 cut(s) 174, 618, 3895, 4025
HindIII AAGCTT 4 cut(s) 881, 1026, 3774, 4044
HpaII CCGG 8 cut(s) 31, 732, 1497, 2750, 3397, 3864, 4037, 4202
HphI GGTGA 8 cut(s) 251, 293, 750, 1652, 2164, 2238, 2427, 3692
Hpy166II GTNNAC 6 cut(s) 174, 618, 1402, 1527, 3895, 4025
Hpy8I GTNNAC 6 cut(s) 174, 618, 1402, 1527, 3895, 4025
Hpy99I CGWCG 2 cut(s) 227, 613
HpyCH4III ACNGT 9 cut(s) 70, 163, 378, 502, 1927, 2654, 2760, 2847, 4031
HpyCH4IV ACGT 5 cut(s) 866, 1138, 2272, 3700, 4021
HpySE526I ACGT 5 cut(s) 866, 1138, 2272, 3700, 4021
Hsp92I GRCGYC 1 cut(s) 3618
HspAI GCGC 3 cut(s) 1590, 3618, 3736
KasI GGCGCC 1 cut(s) 3617
KflI GGGWCCC 1 cut(s) 4095
KroI GCCGGC 1 cut(s) 3863
KroNI GCCGGC 1 cut(s) 3865
LguI GCTCTTC 1 cut(s) 3513
MaeI CTAG 6 cut(s) 177, 332, 1505, 2712, 2904, 4247
MaeII ACGT 5 cut(s) 866, 1138, 2272, 3700, 4021
MbiI CCGCTC 1 cut(s) 1048
MfeI CAATTG 4 cut(s) 341, 1634, 2964, 3101
MflI RGATCY 8 cut(s) 548, 1438, 1937, 2057, 2413, 2542, 3076, 3484
MhlI GDGCHC 3 cut(s) 562, 1285, 1496
MlsI TGGCCA 2 cut(s) 267, 1742
MluI ACGCGT 1 cut(s) 1581
MluNI TGGCCA 2 cut(s) 267, 1742
Mly113I GGCGCC 1 cut(s) 3618
MlyI GAGTC 7 cut(s) 122, 137, 179, 1811, 2833, 3698, 4054
MmeI TCCRAC 6 cut(s) 182, 817, 849, 1315, 1394, 3906
Mox20I TGGCCA 2 cut(s) 267, 1742
Mph1103I ATGCAT 4 cut(s) 1355, 2826, 2913, 3186
MroNI GCCGGC 1 cut(s) 3863
MroXI GAANNNNTTC 3 cut(s) 525, 3546, 3933
MscI TGGCCA 2 cut(s) 267, 1742
MslI CAYNNNNRTG 6 cut(s) 1137, 1395, 2475, 3330, 3441, 3639
Msp20I TGGCCA 2 cut(s) 267, 1742
MspA1I CMGCKG 4 cut(s) 263, 1450, 1622, 2255
MspCI CTTAAG 2 cut(s) 2588, 2599
MspI CCGG 8 cut(s) 31, 732, 1497, 2750, 3397, 3864, 4037, 4202
MunI CAATTG 4 cut(s) 341, 1634, 2964, 3101
Mva1269I GAATGC 8 cut(s) 52, 148, 1604, 1794, 1979, 3757, 3787, 3842
MvnI CGCG 2 cut(s) 1583, 3738
NaeI GCCGGC 1 cut(s) 3865
NarI GGCGCC 1 cut(s) 3618
NciI CCSGG 3 cut(s) 2751, 3397, 3398
NcoI CCATGG 2 cut(s) 1611, 2439
NdeI CATATG 2 cut(s) 1464, 3390
NgoMIV GCCGGC 1 cut(s) 3863
NmuCI GTSAC 7 cut(s) 39, 179, 281, 1294, 1577, 2170, 3701
NsbI TGCGCA 1 cut(s) 1591
NsiI ATGCAT 4 cut(s) 1355, 2826, 2913, 3186
NspI RCATGY 7 cut(s) 405, 417, 1250, 1396, 2828, 2915, 3814
NspV TTCGAA 1 cut(s) 1481
OliI CACNNNNGTG 1 cut(s) 1137
PagI TCATGA 2 cut(s) 2617, 4077
PaqCI CACCTGC 1 cut(s) 4079
PceI AGGCCT 1 cut(s) 3149
PciI ACATGT 2 cut(s) 1392, 3810
PciSI GCTCTTC 1 cut(s) 3513
PcsI WCGNNNNNNNCGW 1 cut(s) 899
PctI GAATGC 8 cut(s) 52, 148, 1604, 1794, 1979, 3757, 3787, 3842
PdiI GCCGGC 1 cut(s) 3865
PdmI GAANNNNTTC 3 cut(s) 525, 3546, 3933
PfeI GAWTC 9 cut(s) 200, 242, 356, 1616, 2267, 2924, 3025, 3689, 4103
PflMI CCANNNNNTGG 1 cut(s) 2953
PfoI TCCNGGA 2 cut(s) 667, 2749
PleI GAGTC 7 cut(s) 121, 136, 178, 1811, 2833, 3698, 4054
PluTI GGCGCC 1 cut(s) 3621
PmaCI CACGTG 2 cut(s) 2273, 3701
PmlI CACGTG 2 cut(s) 2273, 3701
PpsI GAGTC 7 cut(s) 121, 136, 178, 1811, 2833, 3698, 4054
Ppu21I YACGTR 2 cut(s) 2273, 3701
PpuMI RGGWCCY 3 cut(s) 691, 2116, 4095
PscI ACATGT 2 cut(s) 1392, 3810
PshAI GACNNNNGTC 1 cut(s) 3391
PshBI ATTAAT 2 cut(s) 2484, 3462
PsiI TTATAA 2 cut(s) 1728, 3284
Psp1406I AACGTT 1 cut(s) 866
Psp5II RGGWCCY 3 cut(s) 691, 2116, 4095
PspCI CACGTG 2 cut(s) 2273, 3701
PspEI GGTNACC 2 cut(s) 281, 2170
PspFI CCCAGC 1 cut(s) 4165
PspPPI RGGWCCY 3 cut(s) 691, 2116, 4095
PsrI GAACNNNNNNTAC 2 cut(s) 3366, 3398
PstI CTGCAG 1 cut(s) 2998
PstNI CAGNNNCTG 2 cut(s) 382, 1625
PsuI RGATCY 8 cut(s) 548, 1438, 1937, 2057, 2413, 2542, 3076, 3484
PvuII CAGCTG 4 cut(s) 263, 1450, 1622, 2255
RsaI GTAC 2 cut(s) 574, 3479
RsaNI GTAC 2 cut(s) 573, 3478
RseI CAYNNNNRTG 6 cut(s) 1137, 1395, 2475, 3330, 3441, 3639
SapI GCTCTTC 1 cut(s) 3513
SchI GAGTC 7 cut(s) 122, 137, 179, 1811, 2833, 3698, 4054
SduI GDGCHC 3 cut(s) 562, 1285, 1496
SfcI CTRYAG 4 cut(s) 823, 2994, 3036, 3858
SfoI GGCGCC 1 cut(s) 3619
SfuI TTCGAA 1 cut(s) 1481
SinI GGWCC 7 cut(s) 73, 691, 2116, 2517, 3307, 4039, 4095
SmaI CCCGGG 1 cut(s) 3398
SmiMI CAYNNNNRTG 6 cut(s) 1137, 1395, 2475, 3330, 3441, 3639
SmlI CTYRAG 4 cut(s) 1442, 2080, 2588, 2599
SmoI CTYRAG 4 cut(s) 1442, 2080, 2588, 2599
SpeI ACTAGT 1 cut(s) 176
SseBI AGGCCT 1 cut(s) 3149
SsiI CCGC 8 cut(s) 1048, 1273, 1436, 2330, 3248, 3786, 3867, 4086
SspDI GGCGCC 1 cut(s) 3617
SspMI CTAG 6 cut(s) 177, 332, 1505, 2712, 2904, 4247
StuI AGGCCT 1 cut(s) 3149
StyI CCWWGG 6 cut(s) 516, 1611, 1692, 1881, 2439, 4134
TaaI ACNGT 9 cut(s) 70, 163, 378, 502, 1927, 2654, 2760, 2847, 4031
TaiI ACGT 5 cut(s) 869, 1141, 2275, 3703, 4024
TaqI TCGA 9 cut(s) 116, 225, 1481, 1971, 2068, 2141, 3511, 3692, 3807
TauI GCSGC 2 cut(s) 3788, 4088
TfiI GAWTC 9 cut(s) 200, 242, 356, 1616, 2267, 2924, 3025, 3689, 4103
TscAI CASTG 8 cut(s) 1170, 1330, 2059, 2182, 2311, 3325, 4062, 4113
TseFI GTSAC 7 cut(s) 39, 179, 281, 1294, 1577, 2170, 3701
Tsp45I GTSAC 7 cut(s) 39, 179, 281, 1294, 1577, 2170, 3701
TspGWI ACGGA 3 cut(s) 121, 919, 2924
TspMI CCCGGG 1 cut(s) 3396
TspRI CASTG 8 cut(s) 1170, 1330, 2059, 2182, 2311, 3325, 4062, 4113
Van91I CCANNNNNTGG 1 cut(s) 2953
Vha464I CTTAAG 2 cut(s) 2588, 2599
VpaK11BI GGWCC 7 cut(s) 73, 691, 2116, 2517, 3307, 4039, 4095
VspI ATTAAT 2 cut(s) 2484, 3462
XagI CCTNNNNNAGG 1 cut(s) 276
XapI RAATTY 6 cut(s) 256, 1038, 1099, 1238, 1266, 2861
XbaI TCTAGA 1 cut(s) 2711
XceI RCATGY 7 cut(s) 405, 417, 1250, 1396, 2828, 2915, 3814
XcmI CCANNNNNNNNNTGG 3 cut(s) 1101, 1483, 4157
XmaI CCCGGG 1 cut(s) 3396
XmiI GTMKAC 1 cut(s) 1526
XmnI GAANNNNTTC 3 cut(s) 525, 3546, 3933
XspI CTAG 6 cut(s) 177, 332, 1505, 2712, 2904, 4247
Zsp2I ATGCAT 4 cut(s) 1355, 2826, 2913, 3186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.