Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005851

Physical Location & Seq

Genomic Coordinates Reverse (-)

17823860 .. 17830745

Gene Structure 6886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0113300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCAGGCCAGGGAGCGTGCTTGGCGTATTGGTCAGAAGCGGGACGTAACTATATATAGATTGATTACTCGTGGAACTATAGAAGAGAAGGTGTATCATAGACAGATTTACAAACATTTTCTCACGAATAAGATATTGAAAAACCCCCAGCAGAGAAGGTTCTTTAAAGCTCGAGATATGAAGGATCTCTTCATTCTGAATGATGAGGGAGACAGTGGGGCTACTGAAACAGCTAATATATTTGGGCAGTTATCTGAAGATGCCAATGTTGTTTGTGCTCAGAAAGATGACCACAGTACGCGAGAGTCTAAGAAAGTTACTGTACCATATGCCAATGCTTCTGCTGGCAAAAGAAAGAACTCTGAGATTGAATCATCAAGGAGAAATGGAAAAGAAAAAGCTGATCACAGTGAGAGCGATGAGGACGAAGAAACAAATATTCTGAAGTGTCTTTTTGACACGCAAGGGATCCATAGTGCTATGAAGTATGAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLU CLU_N DUF727 TPR_10 TPR_12 eIF3_p135

Protein Analysis

165

Amino Acids

19.11

Weight (kDa)

8.8

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52140 AT3G52140 AT3G52140 AT3G52140
fragaria_vesca	FvH4_4g12380
malus_domestica	MD02G1316400.v1.1 MD07G1005500.v1.1
prunus_persica	Prupe.2G007800_v2.0.a1 Prupe.2G007800_v2.0.a1
pyrus_communis	pycom02g26500 pycom02g26510 pycom07g00460
rosa_chinensis	RchiOBHm_Chr4g0410621
rosa_laevigata	RLG00000008410
rosa_multiflora	Rmu_co8298143.1_g000001 Rmu_sc0005100.1_g000010 Rmu_sc0006144.1_g000007 Rmu_sc0006144.1_g000008
rosa_roxburghii	Rroxscaffold_5G00355410
rosa_rugosa	Rorug04G0113200 Rorug04G0113200 Rorug04G0113300 Rorug04G0113400
rosa_samantha	Rh4AG161800 Rh4BG160800 Rh4CG174800 Rh4DG157100
rosa_wichuraiana	Rw4G013500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	301
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	3 cut(s)	192, 463, 476
AcuI	CTGAAG	2 cut(s)	276, 464
AfaI	GTAC	2 cut(s)	298, 324
AgsI	TTSAA	2 cut(s)	139, 371
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	3 cut(s)	170, 233, 401
AluI	AGCT	3 cut(s)	170, 233, 401
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	3 cut(s)	192, 463, 476
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	1 cut(s)	6
AvaI	CYCGRG	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	468
BauI	CACGAG	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	280
BciT130I	CCWGG	1 cut(s)	10
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	470
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	9
BseMII	CTCAG	2 cut(s)	293, 354
BseYI	CCCAGC	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	301
BshFI	GGCC	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	184, 403, 468
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	292, 355
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	470
BspPI	GGATC	3 cut(s)	192, 463, 476
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	3 cut(s)	184, 403, 468
BssSI	CACGAG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	4 cut(s)	215, 296, 322, 410
Bst6I	CTCTTC	2 cut(s)	78, 194
BstC8I	GCNNGC	3 cut(s)	6, 18, 346
BstDEI	CTNAG	3 cut(s)	279, 309, 363
BstFNI	CGCG	1 cut(s)	301
BstKTI	GATC	3 cut(s)	187, 406, 471
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	3 cut(s)	184, 403, 468
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNI	CCWGG	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	78
BstUI	CGCG	1 cut(s)	301
BstX2I	RGATCY	2 cut(s)	184, 468
BstYI	RGATCY	2 cut(s)	184, 468
BsuRI	GGCC	1 cut(s)	8
BtgZI	GCGATG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	220, 415
Cac8I	GCNNGC	3 cut(s)	6, 18, 346
Csp6I	GTAC	2 cut(s)	297, 323
CviAII	CATG	1 cut(s)	495
CviJI	RGCY	5 cut(s)	8, 170, 221, 233, 401
CviKI_1	RGCY	5 cut(s)	8, 170, 221, 233, 401
CviQI	GTAC	2 cut(s)	297, 323
DdeI	CTNAG	3 cut(s)	279, 309, 363
DpnI	GATC	3 cut(s)	186, 405, 470
DpnII	GATC	3 cut(s)	184, 403, 468
DraI	TTTAAA	1 cut(s)	166
Eam1104I	CTCTTC	2 cut(s)	78, 194
EarI	CTCTTC	2 cut(s)	78, 194
Eco57I	CTGAAG	2 cut(s)	276, 464
Eco88I	CYCGRG	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	8
FaeI	CATG	1 cut(s)	498
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	1 cut(s)	494
FauI	CCCGC	1 cut(s)	33
FauNDI	CATATG	1 cut(s)	328
FbaI	TGATCA	1 cut(s)	403
GsaI	CCCAGC	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	498
HinfI	GANTC	2 cut(s)	305, 371
Hpy188I	TCNGA	6 cut(s)	36, 198, 256, 282, 364, 444
Hpy188III	TCNNGA	2 cut(s)	124, 173
HpyAV	CCTTC	3 cut(s)	82, 150, 175
HpyCH4III	ACNGT	4 cut(s)	215, 296, 322, 410
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	3 cut(s)	279, 309, 363
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	498
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	184, 403, 468
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	3 cut(s)	22, 161, 330
LweI	GCATC	1 cut(s)	250
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	46, 316
MalI	GATC	3 cut(s)	186, 405, 470
MboI	GATC	3 cut(s)	184, 403, 468
MboII	GAAGA	4 cut(s)	95, 181, 269, 440
MflI	RGATCY	2 cut(s)	184, 468
MhlI	GDGCHC	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	2 cut(s)	199, 415
MseI	TTAA	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	10
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	1 cut(s)	22
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	3 cut(s)	184, 403, 468
NlaIII	CATG	1 cut(s)	498
NlaIV	GGNNCC	1 cut(s)	470
PaeR7I	CTCGAG	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	371
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	470
PsuI	RGATCY	2 cut(s)	184, 468
RsaI	GTAC	2 cut(s)	298, 324
RsaNI	GTAC	2 cut(s)	297, 323
SaqAI	TTAA	1 cut(s)	165
Sau3AI	GATC	3 cut(s)	184, 403, 468
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	6 cut(s)	48, 93, 161, 172, 235, 403
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	78
Sfr274I	CTCGAG	1 cut(s)	171
SlaI	CTCGAG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
SsiI	CCGC	1 cut(s)	40
SspI	AATATT	1 cut(s)	439
StyD4I	CCNGG	1 cut(s)	8
TaaI	ACNGT	4 cut(s)	215, 296, 322, 410
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	2 cut(s)	220, 415
TspDTI	ATGAA	3 cut(s)	181, 194, 497
TspRI	CASTG	2 cut(s)	220, 415
XhoI	CTCGAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.