AT3G53270

Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002506
Physical Location & Seq
Reverse (-)
19750047 .. 19753280
3234 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53270.3

Sequence Viewer

Length: 843 bp
ATGAATCTTTCTCCGTTCAAGAGAGATATCGATGAGCTGATAGACGAGTTTGTGGAGGATGATTTGACAACCTTTGCTGATATGAAGAGTGTCTGGCTATCTAGAAAGTTTTCTCATATATATGAAGCTAGTCCTAACAGCAACCTAGCCTTTTTCATGCAGTCACTATATGTTCATACCATTGGTCACATGGTTAGTATTGATTCTTTTTCACGGAGACTTGGAGGTCTTTACTGTCTCTATTGCCTTCATGAGATCCAACCCTTTAAACCCAAGTTCAGAATCTATATCTCACTTCAAGAGCTTGGGAAATTTAGGGATCTTGTAGTTGAGGCAAAAGATAAAGGTGTAGAGATAGCTGCTGCTGTGGCAAAAAAAATGCTTGATGAGAACATGTTAATATTTGGAGCTGTGGATGAGACATCTGCAACCAAGACAATTCATCAATTAACCGAGCTACAGAACGCACGTGTGCGGTTTGCCTATGAGAAGTTAATCTGTGACACTAGTATTAACCAATTTATTCATTTGGATATGGGTAAGGAAGTTGATCTGAATTCCCTAGATAAAATGTCTATAGAATATGCAGAGGCCAAGAAGCGTGCAGTCGAAGGTGCAGGAGAAATAATGGAGATTGATGACATAAAGCATATATCAGAAGAGAAAGAGTTGATGGGAGAGAGAATGGAGAAATTGAAAGAGGAATGGGATTCACAAAGACTTTACTTTTATGAACAAACCAAGCTTGATGGTTTTACTACGACACCAAAACAGTTGACAAATGTGGAACATGATGAAGATGATGGGTTTGATGAGCTTGATCGCTTACTTTCTCAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNAPc_SNAP43

Protein Analysis

280

Amino Acids

32.45

Weight (kDa)

4.85

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC1 PF09808 6 - 199 1.5e-54 Small nuclear RNA activating complex (SNAPc), subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 225
AciI CCGC 1 cut(s) 475
AclWI GGATC 2 cut(s) 250, 327
AcsI RAATTY 2 cut(s) 311, 556
AcvI CACGTG 1 cut(s) 470
AflIII ACRYGT 2 cut(s) 393, 469
AgsI TTSAA 3 cut(s) 19, 299, 697
AhlI ACTAGT 1 cut(s) 506
AluBI AGCT 9 cut(s) 37, 128, 304, 359, 410, 457, 745, 817, 840
AluI AGCT 9 cut(s) 37, 128, 304, 359, 410, 457, 745, 817, 840
Alw26I GTCTC 3 cut(s) 211, 242, 413
AlwI GGATC 2 cut(s) 250, 327
AoxI GGCC 1 cut(s) 591
ApeKI GCWGC 2 cut(s) 359, 362
ApoI RAATTY 2 cut(s) 311, 556
Asp700I GAANNNNTTC 1 cut(s) 109
BbrPI CACGTG 1 cut(s) 470
BbvI GCAGC 2 cut(s) 346, 349
BccI CCATC 3 cut(s) 667, 743, 797
BcoDI GTCTC 3 cut(s) 211, 242, 413
BcuI ACTAGT 1 cut(s) 506
BfaI CTAG 6 cut(s) 102, 129, 146, 507, 563, 841
BfmI CTRYAG 2 cut(s) 458, 576
BisI GCNGC 2 cut(s) 360, 363
BlsI GCNGC 2 cut(s) 361, 364
Bsa29I ATCGAT 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 470
BseCI ATCGAT 1 cut(s) 30
BseGI GGATG 2 cut(s) 64, 421
BseXI GCAGC 2 cut(s) 346, 349
BsgI GTGCAG 2 cut(s) 624, 636
BshFI GGCC 1 cut(s) 593
BshVI ATCGAT 1 cut(s) 30
BsmAI GTCTC 3 cut(s) 211, 242, 413
BsnI GGCC 1 cut(s) 593
Bsp143I GATC 4 cut(s) 255, 319, 550, 820
BspACI CCGC 1 cut(s) 475
BspANI GGCC 1 cut(s) 593
BspDI ATCGAT 1 cut(s) 30
BspHI TCATGA 1 cut(s) 250
BspPI GGATC 2 cut(s) 250, 327
BssMI GATC 4 cut(s) 255, 319, 550, 820
Bst4CI ACNGT 2 cut(s) 236, 774
Bst6I CTCTTC 2 cut(s) 80, 654
BstBAI YACGTR 1 cut(s) 470
BstC8I GCNNGC 1 cut(s) 603
BstF5I GGATG 2 cut(s) 64, 421
BstKTI GATC 4 cut(s) 258, 322, 553, 823
BstMAI GTCTC 3 cut(s) 211, 242, 413
BstMBI GATC 4 cut(s) 255, 319, 550, 820
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 397
BstSFI CTRYAG 2 cut(s) 458, 576
BstV1I GCAGC 2 cut(s) 346, 349
BstX2I RGATCY 2 cut(s) 255, 319
BstYI RGATCY 2 cut(s) 255, 319
Bsu15I ATCGAT 1 cut(s) 30
BsuRI GGCC 1 cut(s) 593
BsuTUI ATCGAT 1 cut(s) 30
BtsCI GGATG 2 cut(s) 64, 421
Cac8I GCNNGC 1 cut(s) 603
CciI TCATGA 1 cut(s) 250
ClaI ATCGAT 1 cut(s) 30
CviAII CATG 5 cut(s) 157, 190, 251, 394, 791
DpnI GATC 4 cut(s) 257, 321, 552, 822
DpnII GATC 4 cut(s) 255, 319, 550, 820
DraI TTTAAA 1 cut(s) 268
DrdI GACNNNNNNGTC 1 cut(s) 225
DseDI GACNNNNNNGTC 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 80, 654
EarI CTCTTC 2 cut(s) 80, 654
Eco32I GATATC 1 cut(s) 28
Eco72I CACGTG 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 556
EcoRV GATATC 1 cut(s) 28
FaeI CATG 5 cut(s) 160, 193, 254, 397, 794
FatI CATG 5 cut(s) 156, 189, 250, 393, 790
Fnu4HI GCNGC 2 cut(s) 360, 363
FokI GGATG 2 cut(s) 71, 428
Fsp4HI GCNGC 2 cut(s) 360, 363
FspBI CTAG 6 cut(s) 102, 129, 146, 507, 563, 841
GluI GCNGC 2 cut(s) 360, 363
HaeIII GGCC 1 cut(s) 593
Hin1II CATG 5 cut(s) 160, 193, 254, 397, 794
HincII GTYRAC 1 cut(s) 777
HindII GTYRAC 1 cut(s) 777
HindIII AAGCTT 1 cut(s) 743
HinfI GANTC 4 cut(s) 4, 203, 282, 710
Hpy166II GTNNAC 1 cut(s) 777
Hpy188I TCNGA 3 cut(s) 281, 555, 658
Hpy188III TCNNGA 4 cut(s) 19, 102, 251, 299
Hpy8I GTNNAC 1 cut(s) 777
HpyAV CCTTC 2 cut(s) 257, 605
HpyCH4III ACNGT 2 cut(s) 236, 774
HpyCH4IV ACGT 1 cut(s) 469
HpyCH4V TGCA 5 cut(s) 160, 428, 587, 605, 617
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpySE526I ACGT 1 cut(s) 469
Hsp92II CATG 5 cut(s) 160, 193, 254, 397, 794
Kzo9I GATC 4 cut(s) 255, 319, 550, 820
LmnI GCTCC 1 cut(s) 407
LpnPI CCDG 2 cut(s) 79, 603
Lsp1109I GCAGC 2 cut(s) 346, 349
MaeI CTAG 6 cut(s) 102, 129, 146, 507, 563, 841
MaeII ACGT 1 cut(s) 469
MaeIII GTNAC 3 cut(s) 162, 185, 500
MalI GATC 4 cut(s) 257, 321, 552, 822
MboI GATC 4 cut(s) 255, 319, 550, 820
MboII GAAGA 3 cut(s) 97, 671, 809
MflI RGATCY 2 cut(s) 255, 319
MluCI AATT 6 cut(s) 311, 438, 446, 518, 556, 692
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 5 cut(s) 49, 218, 325, 583, 694
MroXI GAANNNNTTC 1 cut(s) 109
MseI TTAA 5 cut(s) 267, 398, 449, 494, 513
MslI CAYNNNNRTG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 368
NdeII GATC 4 cut(s) 255, 319, 550, 820
NlaIII CATG 5 cut(s) 160, 193, 254, 397, 794
NmuCI GTSAC 3 cut(s) 162, 185, 500
NspI RCATGY 1 cut(s) 397
PagI TCATGA 1 cut(s) 250
PciI ACATGT 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 109
PfeI GAWTC 4 cut(s) 4, 203, 282, 710
PkrI GCNGC 2 cut(s) 361, 364
PmaCI CACGTG 1 cut(s) 470
PmlI CACGTG 1 cut(s) 470
Ppu21I YACGTR 1 cut(s) 470
PscI ACATGT 1 cut(s) 393
PspCI CACGTG 1 cut(s) 470
PsuI RGATCY 2 cut(s) 255, 319
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 5 cut(s) 267, 398, 449, 494, 513
SatI GCNGC 2 cut(s) 360, 363
Sau3AI GATC 4 cut(s) 255, 319, 550, 820
SfcI CTRYAG 2 cut(s) 458, 576
SmiMI CAYNNNNRTG 1 cut(s) 120
SpeI ACTAGT 1 cut(s) 506
Sse9I AATT 6 cut(s) 311, 438, 446, 518, 556, 692
SsiI CCGC 1 cut(s) 475
SspI AATATT 1 cut(s) 402
SspMI CTAG 6 cut(s) 102, 129, 146, 507, 563, 841
TaaI ACNGT 2 cut(s) 236, 774
TaiI ACGT 1 cut(s) 472
TaqI TCGA 2 cut(s) 30, 609
TasI AATT 6 cut(s) 311, 438, 446, 518, 556, 692
TfiI GAWTC 4 cut(s) 4, 203, 282, 710
Tru1I TTAA 5 cut(s) 267, 398, 449, 494, 513
Tru9I TTAA 5 cut(s) 267, 398, 449, 494, 513
TseFI GTSAC 3 cut(s) 162, 185, 500
TseI GCWGC 2 cut(s) 359, 362
Tsp45I GTSAC 3 cut(s) 162, 185, 500
TspGWI ACGGA 1 cut(s) 229
XapI RAATTY 2 cut(s) 311, 556
XbaI TCTAGA 1 cut(s) 101
XceI RCATGY 1 cut(s) 397
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 109
XspI CTAG 6 cut(s) 102, 129, 146, 507, 563, 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.