FvH4_6g31820

Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002506
Physical Location & Seq
Reverse (-)
24906797 .. 24907654
858 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31820.t1

Sequence Viewer

Length: 858 bp
ATGGATCTAGCTCCGATGAAGCGCGACATGGACGACCTCATATCCCAATTCGCCGCCGCCGATTCGACTCGCTTCTCCGACATGAAGCAAGTCTGGCTCTCCAAAAAATTCTCCTACATCTACAACGCCCGTCCCACCTGCGCCAACTCCCTCGCCCTCTTCATGCAATCCCTCTACTCCCACTCAATCGCCCACCTCATCTCTCCACACTCCTCCCTATCACGACGCCTCGGCGGCCTCTACTGCCTCTACTGCCTCCACGAGACCCAGCCTTTCATGCCCCCTTTCAAAATCTACCTCTCCCTCGAGGAGCTCAAGAAGCTCCGGAGCCTGGTGGCGGAGGCGAAGGTTCGGGGTTTGGGAGCGGCGGCTGCTCTGGTGAGGAGGCTGCTGGAGAAGAAGGCGTTTCTGTTCGGGTGCGTGGAGACGAATGAGGGGCTGAAAGGGAAGGTGGACGAGCTGACGGAGCTGGAGAATAGGAGGATTCGGGCGGCGTGTGAGAAGCTGTTTGGGGAGTCGAAGATCGAGGAGTTTATTCATATGGATTTGGGGATGGAGGTTGATTTGGGGAAGGTGAAGCAGATGTCGAGGGAGTATAAGGAGTTGAAGAGGGTTGCGGCGGTGGAGGGCGGGGATGAGGAGATGAAGGAGGGGCTTGAGGGGGATAAGGAGTTGGTGGGGGATGTGATGGAGAAGATTTCCAAGGAGTGGGATGCGCAGAGGGAAGTGTTTTATAGGCAGACAGGGTTGAGTCAGAAATTGAATGAAGAAGAGCAGCAGCTGTTGCAGCAAGAAGAGGAGGGAGACGACGACCAGTGTTTCGACAAGGAACTCGAACAAATTCTCTCTGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNAPc_SNAP43

Protein Analysis

286

Amino Acids

32.68

Weight (kDa)

5.08

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC1 PF09808 6 - 203 7.8e-51 Small nuclear RNA activating complex (SNAPc), subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 146
AbsI CCTCGAGG 1 cut(s) 305
Acc16I TGCGCA 1 cut(s) 717
Acc36I ACCTGC 1 cut(s) 146
AccB7I CCANNNNNTGG 1 cut(s) 708
AccBSI CCGCTC 1 cut(s) 365
AccII CGCG 1 cut(s) 24
AccIII TCCGGA 1 cut(s) 324
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 107, 840
AcyI GRCGYC 1 cut(s) 226
AfiI CCNNNNNNNGG 3 cut(s) 331, 337, 708
AgsI TTSAA 3 cut(s) 289, 607, 763
AjnI CCWGG 1 cut(s) 330
AluBI AGCT 7 cut(s) 11, 313, 322, 460, 469, 505, 781
AluI AGCT 7 cut(s) 11, 313, 322, 460, 469, 505, 781
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 3 cut(s) 257, 419, 798
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 781
Ama87I CYCGRG 1 cut(s) 305
Aor13HI TCCGGA 1 cut(s) 324
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 5 cut(s) 371, 388, 775, 778, 787
ApoI RAATTY 2 cut(s) 107, 840
ArsI GACNNNNNNTTYG 2 cut(s) 803, 835
Asp700I GAANNNNTTC 1 cut(s) 840
AspLEI GCGC 3 cut(s) 24, 143, 718
AsuHPI GGTGA 2 cut(s) 391, 586
AvaI CYCGRG 1 cut(s) 305
BanII GRGCYC 1 cut(s) 315
BauI CACGAG 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 5 cut(s) 358, 375, 787, 790, 799
BccI CCATC 2 cut(s) 547, 682
BciT130I CCWGG 1 cut(s) 332
BcoDI GTCTC 3 cut(s) 257, 419, 798
BfaI CTAG 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 146
BglI GCCNNNNNGGC 1 cut(s) 234
Bme1390I CCNGG 1 cut(s) 332
BmeT110I CYCGRG 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 1 cut(s) 703
BpmI CTGGAG 2 cut(s) 413, 491
BpuEI CTTGAG 2 cut(s) 299, 677
BsaHI GRCGYC 1 cut(s) 226
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 229, 702
BsaWI WCCGGW 1 cut(s) 324
Bsc4I CCNNNNNNNGG 3 cut(s) 331, 337, 708
Bse1I ACTGG 1 cut(s) 814
BseAI TCCGGA 1 cut(s) 324
BseBI CCWGG 1 cut(s) 332
BseDI CCNNGG 2 cut(s) 229, 702
BseGI GGATG 4 cut(s) 558, 640, 688, 718
BseLI CCNNNNNNNGG 3 cut(s) 331, 337, 708
BseNI ACTGG 1 cut(s) 814
BseRI GAGGAG 6 cut(s) 202, 323, 397, 542, 653, 812
BseXI GCAGC 5 cut(s) 358, 375, 787, 790, 799
BseYI CCCAGC 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 1 cut(s) 325
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 3 cut(s) 331, 337, 708
BsmAI GTCTC 3 cut(s) 257, 419, 798
BsmBI CGTCTC 2 cut(s) 419, 798
BsmFI GGGAC 1 cut(s) 117
BsnI GGCC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 257
BsoBI CYCGRG 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 315
Bsp13I TCCGGA 1 cut(s) 324
Bsp143I GATC 2 cut(s) 4, 522
BspANI GGCC 1 cut(s) 237
BspEI TCCGGA 1 cut(s) 324
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 329
BspMI ACCTGC 1 cut(s) 146
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 765
BspTNI GGTCTC 1 cut(s) 257
BsrBI CCGCTC 1 cut(s) 365
BsrI ACTGG 1 cut(s) 814
BssECI CCNNGG 2 cut(s) 229, 702
BssMI GATC 2 cut(s) 4, 522
BssNI GRCGYC 1 cut(s) 226
BssSI CACGAG 1 cut(s) 260
BssT1I CCWWGG 1 cut(s) 702
Bst2BI CACGAG 1 cut(s) 260
Bst2UI CCWGG 1 cut(s) 332
Bst6I CTCTTC 4 cut(s) 164, 602, 765, 789
BstACI GRCGYC 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 784
BstF5I GGATG 4 cut(s) 558, 640, 688, 718
BstFNI CGCG 1 cut(s) 24
BstHHI GCGC 3 cut(s) 24, 143, 718
BstKTI GATC 2 cut(s) 7, 525
BstMAI GTCTC 3 cut(s) 257, 419, 798
BstMBI GATC 2 cut(s) 4, 522
BstNI CCWGG 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 330
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 5 cut(s) 358, 375, 787, 790, 799
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 237
BtsCI GGATG 4 cut(s) 558, 640, 688, 718
BtsIMutI CAGTG 1 cut(s) 821
BveI ACCTGC 1 cut(s) 146
CaiI CAGNNNCTG 1 cut(s) 781
CfoI GCGC 3 cut(s) 24, 143, 718
CseI GACGC 1 cut(s) 234
CviAII CATG 4 cut(s) 28, 82, 163, 277
DpnI GATC 2 cut(s) 6, 524
DpnII GATC 2 cut(s) 4, 522
Eam1104I CTCTTC 4 cut(s) 164, 602, 765, 789
EarI CTCTTC 4 cut(s) 164, 602, 765, 789
EciI GGCGGA 1 cut(s) 353
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 702
Eco24I GRGCYC 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 257
Eco53kI GAGCTC 1 cut(s) 313
Eco88I CYCGRG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 702
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 702
Esp3I CGTCTC 2 cut(s) 419, 798
FaeI CATG 4 cut(s) 31, 85, 166, 280
FaiI YATR 9 cut(s) 29, 41, 83, 164, 278, 540, 542, 597, 735
FaqI GGGAC 1 cut(s) 117
FatI CATG 4 cut(s) 27, 81, 162, 276
FauI CCCGC 1 cut(s) 623
FauNDI CATATG 1 cut(s) 540
FokI GGATG 4 cut(s) 565, 647, 695, 725
FriOI GRGCYC 1 cut(s) 315
FspBI CTAG 1 cut(s) 8
FspI TGCGCA 1 cut(s) 717
GlaI GCGC 3 cut(s) 23, 142, 717
GsaI CCCAGC 1 cut(s) 271
GsuI CTGGAG 2 cut(s) 413, 491
HaeIII GGCC 1 cut(s) 237
HapII CCGG 1 cut(s) 325
HgaI GACGC 1 cut(s) 234
HhaI GCGC 3 cut(s) 24, 143, 718
Hin1I GRCGYC 1 cut(s) 226
Hin1II CATG 4 cut(s) 31, 85, 166, 280
Hin6I GCGC 3 cut(s) 22, 141, 716
HinP1I GCGC 3 cut(s) 22, 141, 716
HinfI GANTC 5 cut(s) 62, 67, 484, 515, 751
HpaII CCGG 1 cut(s) 325
HphI GGTGA 2 cut(s) 391, 586
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 4 cut(s) 15, 79, 756, 850
Hpy188III TCNNGA 3 cut(s) 222, 316, 325
Hpy8I GTNNAC 1 cut(s) 454
Hpy99I CGWCG 2 cut(s) 228, 812
HpyAV CCTTC 5 cut(s) 340, 394, 442, 565, 640
HpyCH4V TGCA 2 cut(s) 166, 787
Hsp92I GRCGYC 1 cut(s) 226
Hsp92II CATG 4 cut(s) 31, 85, 166, 280
HspAI GCGC 3 cut(s) 22, 141, 716
Kpn2I TCCGGA 1 cut(s) 324
Kzo9I GATC 2 cut(s) 4, 522
LguI GCTCTTC 1 cut(s) 765
LmnI GCTCC 6 cut(s) 16, 310, 327, 327, 362, 466
Lsp1109I GCAGC 5 cut(s) 358, 375, 787, 790, 799
LweI GCATC 1 cut(s) 703
MaeI CTAG 1 cut(s) 8
MalI GATC 2 cut(s) 6, 524
MbiI CCGCTC 1 cut(s) 365
MboI GATC 2 cut(s) 4, 522
MboII GAAGA 8 cut(s) 151, 409, 532, 619, 706, 779, 782, 806
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 4 cut(s) 47, 107, 758, 840
MlyI GAGTC 3 cut(s) 61, 524, 760
MmeI TCCRAC 1 cut(s) 102
MroI TCCGGA 1 cut(s) 324
MroXI GAANNNNTTC 1 cut(s) 840
MspA1I CMGCKG 1 cut(s) 781
MspI CCGG 1 cut(s) 325
MspR9I CCNGG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 332
MvnI CGCG 1 cut(s) 24
NdeI CATATG 1 cut(s) 540
NdeII GATC 2 cut(s) 4, 522
NlaIII CATG 4 cut(s) 31, 85, 166, 280
NlaIV GGNNCC 1 cut(s) 329
NmeAIII GCCGAG 1 cut(s) 210
NsbI TGCGCA 1 cut(s) 717
PaeR7I CTCGAG 1 cut(s) 305
PaqCI CACCTGC 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 765
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 840
PfeI GAWTC 2 cut(s) 62, 484
PflMI CCANNNNNTGG 1 cut(s) 708
PleI GAGTC 3 cut(s) 61, 523, 759
PpsI GAGTC 3 cut(s) 61, 523, 759
Psp124BI GAGCTC 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 330
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 329
PspXI VCTCGAGB 1 cut(s) 305
PstNI CAGNNNCTG 1 cut(s) 781
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 781
SacI GAGCTC 1 cut(s) 315
SapI GCTCTTC 1 cut(s) 765
Sau3AI GATC 2 cut(s) 4, 522
SchI GAGTC 3 cut(s) 61, 524, 760
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 1 cut(s) 315
SfaNI GCATC 1 cut(s) 703
Sfr274I CTCGAG 1 cut(s) 305
SlaI CTCGAG 1 cut(s) 305
SmlI CTYRAG 3 cut(s) 305, 314, 656
SmoI CTYRAG 3 cut(s) 305, 314, 656
Sse9I AATT 4 cut(s) 47, 107, 758, 840
SspMI CTAG 1 cut(s) 8
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 1 cut(s) 702
TaqI TCGA 7 cut(s) 65, 306, 518, 525, 587, 822, 834
TasI AATT 4 cut(s) 47, 107, 758, 840
TauI GCSGC 7 cut(s) 56, 59, 237, 368, 371, 494, 620
TfiI GAWTC 2 cut(s) 62, 484
TscAI CASTG 1 cut(s) 821
TseI GCWGC 5 cut(s) 371, 388, 775, 778, 787
TspDTI ATGAA 7 cut(s) 32, 98, 151, 265, 527, 659, 780
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 1 cut(s) 821
Van91I CCANNNNNTGG 1 cut(s) 708
XapI RAATTY 2 cut(s) 107, 840
XhoI CTCGAG 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 840
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.