RLG00000024842

Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002506
Physical Location & Seq
Forward (+)
39622571 .. 39624065
1495 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024842

Sequence Viewer

Length: 921 bp
ATGAAGCACGACATCGACGACCTGATATCCCAATTCGCCGCCGCCGATTCGACTCGCTTCACCGATATGAAGCAAGTCTGGCTCTCCAACAAGTTCTCCTACATCTACGACGCGCGTCCCACTTGCACCAATTCCCTCGCCCTCTTCATGCAATCCCTCTATTCCCACTCAATCGGACACCTAATCTCTCCCGCTTCCTCCCTGTCACGACGGCTCGGCGGCCTCTACTGCCTTTACTGTCTCTACGAGACCCAGCCCTTCAAGCCCCCTTTCAAGGTCTACCTATCCCTCGAGGAGCTCAAGAAGCTCCGGAAGATCGTGGCCGACGCCAAGGTCCGGGGCGTGAGTGCGGCAAGTGCCGTGGTGAAGTGGATGCTGGAGAAGAATGCGTTTTTGTTCGGGTGTGTGGAGACAAACGAGGGTTTGAAAGGGAAGGTGGATGAGTTGACGGAGCTGGAGAATGCGAGGATTAAAGCGGCGTGTAAGAAGTTGTTTGATGATACCAAGATTGAGGAGTTTATTCACATGGATTTGGGGATGGAGGTTGATTTGAGGAAGGTGAAGCAGATGTGTAGGGATTATGAGGAGTTGAAGAGGGTTGCGGCGGTGGAGGGCGGTGATGAAGAGATGAAGGGGGTTTCCGAAGGTAAGGAGTTGGTTGGGGATGCAATGGAGAAGATTGCCAAGGAGTGGGATGCTCAGAGGGAAGTGTTTTATCAGCAGACGGGATTGAGTCAGAAACTGAATGAAGAGGAGCAGCAGCAGCAGCATCAAGAAGAGGAGGGAGATGATGATAATGCTTTTGAGTTTCTGAGTTCATTCTTGATGTTCCACAGATTTACCCAACGCATAAAAAGCAAGAATATGTTTATGAAGCAGTGCTTAATAAGGTCTGAAATGATGAGGTTGTGCAGCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNAPc_SNAP43

Protein Analysis

307

Amino Acids

35.3

Weight (kDa)

5.69

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC1 PF09808 1 - 198 4.3e-51 Small nuclear RNA activating complex (SNAPc), subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AbsI CCTCGAGG 1 cut(s) 290
AccB7I CCANNNNNTGG 1 cut(s) 690
AccI GTMKAC 1 cut(s) 279
AccII CGCG 2 cut(s) 113, 115
AccIII TCCGGA 1 cut(s) 309
AciI CCGC 9 cut(s) 39, 42, 192, 219, 350, 476, 602, 605, 615
AcoI YGGCCR 1 cut(s) 321
AcyI GRCGYC 1 cut(s) 327
AfiI CCNNNNNNNGG 3 cut(s) 274, 336, 690
AgsI TTSAA 4 cut(s) 262, 274, 427, 592
AluBI AGCT 3 cut(s) 298, 307, 454
AluI AGCT 3 cut(s) 298, 307, 454
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 3 cut(s) 242, 245, 404
AlwNI CAGNNNCTG 1 cut(s) 742
Ama87I CYCGRG 1 cut(s) 290
Aor13HI TCCGGA 1 cut(s) 309
AoxI GGCC 2 cut(s) 220, 321
ApeKI GCWGC 5 cut(s) 757, 760, 763, 766, 912
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 334
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 4 cut(s) 52, 376, 571, 629
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 1 cut(s) 334
BanII GRGCYC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 300
BbvI GCAGC 4 cut(s) 769, 772, 775, 778
BccI CCATC 1 cut(s) 532
BceAI ACGGC 2 cut(s) 227, 344
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 3 cut(s) 242, 245, 404
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 4 cut(s) 363, 655, 685, 778
BoxI GACNNNNGTC 1 cut(s) 114
BpmI CTGGAG 2 cut(s) 398, 476
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 4 cut(s) 330, 337, 360, 684
BsaWI WCCGGW 1 cut(s) 309
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 336, 690
Bse3DI GCAATG 1 cut(s) 675
BseAI TCCGGA 1 cut(s) 309
BseDI CCNNGG 4 cut(s) 330, 337, 360, 684
BseGI GGATG 5 cut(s) 378, 445, 543, 670, 700
BseLI CCNNNNNNNGG 3 cut(s) 274, 336, 690
BseMI GCAATG 1 cut(s) 675
BseMII CTCAG 2 cut(s) 713, 803
BseRI GAGGAG 5 cut(s) 308, 527, 599, 767, 794
BseXI GCAGC 4 cut(s) 769, 772, 775, 778
BseYI CCCAGC 1 cut(s) 252
Bsh1236I CGCG 2 cut(s) 113, 115
BshFI GGCC 2 cut(s) 222, 323
BsiHKAI GWGCWC 1 cut(s) 300
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 2 cut(s) 310, 337
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 3 cut(s) 274, 336, 690
BsmAI GTCTC 3 cut(s) 242, 245, 404
BsmFI GGGAC 1 cut(s) 102
BsmI GAATGC 2 cut(s) 391, 466
BsnI GGCC 2 cut(s) 222, 323
Bso31I GGTCTC 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 300
Bsp13I TCCGGA 1 cut(s) 309
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 9 cut(s) 39, 42, 192, 219, 350, 476, 602, 605, 615
BspANI GGCC 2 cut(s) 222, 323
BspCNI CTCAG 2 cut(s) 712, 804
BspEI TCCGGA 1 cut(s) 309
BspFNI CGCG 2 cut(s) 113, 115
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 675
BssECI CCNNGG 4 cut(s) 330, 337, 360, 684
BssMI GATC 1 cut(s) 315
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 2 cut(s) 330, 684
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 5 cut(s) 149, 587, 618, 744, 771
BstACI GRCGYC 1 cut(s) 327
BstDEI CTNAG 2 cut(s) 699, 812
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 5 cut(s) 378, 445, 543, 670, 700
BstFNI CGCG 2 cut(s) 113, 115
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 1 cut(s) 318
BstMAI GTCTC 3 cut(s) 242, 245, 404
BstMBI GATC 1 cut(s) 315
BstMWI GCNNNNNNNGC 8 cut(s) 79, 228, 262, 304, 356, 763, 766, 855
BstPAI GACNNNNGTC 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 336
BstUI CGCG 2 cut(s) 113, 115
BstV1I GCAGC 4 cut(s) 769, 772, 775, 778
BsuRI GGCC 2 cut(s) 222, 323
BtgI CCRYGG 1 cut(s) 360
BtsCI GGATG 5 cut(s) 378, 445, 543, 670, 700
BtsI GCAGTG 1 cut(s) 884
BtsIMutI CAGTG 1 cut(s) 884
CaiI CAGNNNCTG 1 cut(s) 742
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 334
CseI GACGC 3 cut(s) 104, 119, 335
CspCI CAANNNNNGTGG 2 cut(s) 342, 377
CviAII CATG 2 cut(s) 148, 526
DdeI CTNAG 2 cut(s) 699, 812
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 5 cut(s) 149, 587, 618, 744, 771
EarI CTCTTC 5 cut(s) 149, 587, 618, 744, 771
Ecl136II GAGCTC 1 cut(s) 298
Eco130I CCWWGG 2 cut(s) 330, 684
Eco24I GRGCYC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 334
Eco53kI GAGCTC 1 cut(s) 298
Eco88I CYCGRG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 298
EcoRV GATATC 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 330, 684
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 2 cut(s) 330, 684
FaeI CATG 2 cut(s) 151, 529
FaiI YATR 8 cut(s) 68, 149, 527, 582, 851, 866, 872, 919
FalI AAGNNNNNCTT 2 cut(s) 866, 898
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 147, 525
FauI CCCGC 1 cut(s) 199
FblI GTMKAC 1 cut(s) 279
FokI GGATG 5 cut(s) 385, 452, 550, 677, 707
FriOI GRGCYC 1 cut(s) 300
GlaI GCGC 1 cut(s) 114
GsaI CCCAGC 1 cut(s) 256
GsuI CTGGAG 2 cut(s) 398, 476
HaeIII GGCC 2 cut(s) 222, 323
HapII CCGG 2 cut(s) 310, 337
HgaI GACGC 3 cut(s) 104, 119, 335
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 2 cut(s) 151, 529
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HinfI GANTC 3 cut(s) 47, 52, 733
HpaII CCGG 2 cut(s) 310, 337
HphI GGTGA 4 cut(s) 52, 376, 571, 629
Hpy166II GTNNAC 2 cut(s) 280, 447
Hpy188I TCNGA 6 cut(s) 176, 643, 702, 738, 813, 895
Hpy188III TCNNGA 5 cut(s) 207, 301, 310, 773, 823
Hpy8I GTNNAC 2 cut(s) 280, 447
Hpy99I CGWCG 4 cut(s) 20, 113, 213, 329
HpyAV CCTTC 5 cut(s) 268, 427, 550, 625, 638
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 4 cut(s) 126, 151, 668, 912
HpyF10VI GCNNNNNNNGC 8 cut(s) 79, 228, 262, 304, 356, 763, 766, 855
HpyF3I CTNAG 2 cut(s) 699, 812
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 2 cut(s) 151, 529
HspAI GCGC 1 cut(s) 113
Kpn2I TCCGGA 1 cut(s) 309
Kzo9I GATC 1 cut(s) 315
LmnI GCTCC 4 cut(s) 295, 312, 451, 754
LpnPI CCDG 8 cut(s) 35, 64, 215, 266, 323, 350, 362, 440
Lsp1109I GCAGC 4 cut(s) 769, 772, 775, 778
LweI GCATC 4 cut(s) 363, 655, 685, 778
MaeIII GTNAC 1 cut(s) 204
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 8 cut(s) 136, 325, 394, 604, 635, 688, 761, 788
MhlI GDGCHC 1 cut(s) 300
MluCI AATT 2 cut(s) 32, 130
MlyI GAGTC 2 cut(s) 46, 742
MmeI TCCRAC 1 cut(s) 111
MroI TCCGGA 1 cut(s) 309
MseI TTAA 2 cut(s) 471, 884
MslI CAYNNNNRTG 1 cut(s) 65
MspI CCGG 2 cut(s) 310, 337
MspR9I CCNGG 1 cut(s) 338
Mva1269I GAATGC 2 cut(s) 391, 466
MvnI CGCG 2 cut(s) 113, 115
MwoI GCNNNNNNNGC 8 cut(s) 79, 228, 262, 304, 356, 763, 766, 855
NciI CCSGG 1 cut(s) 338
NdeII GATC 1 cut(s) 315
NlaIII CATG 2 cut(s) 151, 529
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 204
PaeR7I CTCGAG 1 cut(s) 290
PcsI WCGNNNNNNNCGW 2 cut(s) 15, 42
PctI GAATGC 2 cut(s) 391, 466
PfeI GAWTC 1 cut(s) 47
PflMI CCANNNNNTGG 1 cut(s) 690
PleI GAGTC 2 cut(s) 46, 741
PpsI GAGTC 2 cut(s) 46, 741
PshAI GACNNNNGTC 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 334
PspXI VCTCGAGB 1 cut(s) 290
PstNI CAGNNNCTG 1 cut(s) 742
RseI CAYNNNNRTG 1 cut(s) 65
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 2 cut(s) 471, 884
Sau3AI GATC 1 cut(s) 315
Sau96I GGNCC 1 cut(s) 334
SchI GAGTC 2 cut(s) 46, 742
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 1 cut(s) 300
SfaNI GCATC 4 cut(s) 363, 655, 685, 778
Sfr274I CTCGAG 1 cut(s) 290
SinI GGWCC 1 cut(s) 334
SlaI CTCGAG 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 65
SmlI CTYRAG 2 cut(s) 290, 299
SmoI CTYRAG 2 cut(s) 290, 299
Sse9I AATT 2 cut(s) 32, 130
SsiI CCGC 9 cut(s) 39, 42, 192, 219, 350, 476, 602, 605, 615
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 2 cut(s) 330, 684
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 3 cut(s) 15, 50, 291
TasI AATT 2 cut(s) 32, 130
TauI GCSGC 6 cut(s) 41, 44, 222, 353, 479, 605
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 2 cut(s) 471, 884
Tru9I TTAA 2 cut(s) 471, 884
TscAI CASTG 1 cut(s) 884
TseFI GTSAC 1 cut(s) 204
TseI GCWGC 5 cut(s) 757, 760, 763, 766, 912
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 8 cut(s) 17, 83, 136, 636, 644, 762, 807, 887
TspGWI ACGGA 1 cut(s) 464
TspRI CASTG 1 cut(s) 884
Van91I CCANNNNNTGG 1 cut(s) 690
VpaK11BI GGWCC 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 290
XmiI GTMKAC 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.