Rh2CG390100

Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002506
Physical Location & Seq
Reverse (-)
53157472 .. 53171450
13979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG390100.1

Sequence Viewer

Length: 621 bp
ATGTTGAATCGACGACTCGGCGGCCTCTACTGCCTCTACTGTCTCTACGAGACCCAGCCCTTGAAGCCCCCTTTCAAGGTCTACGTATCCCTCGAGGAGCTCAAGAAGCTCCGGAAGCTCGTGGCCGACGCCAAGGTCCGGGGCGTGAGCGCGGCGAGTGCCGTGGTGAAGCGGATGCTGGAGAAGAATGCGTTTCTGTTCGGGTGTGTGGAGACGAACGAGGGTTTGAAAGGGAAGGTGGATGAGTTGACGGAGCTGGAGAACGCGAGGATTAAAGCGGCGTGTAAGAAGTTGTTTGATGATACCAAGATTGAGGAGTTTATTCACATGGATTTGGGGATGGAGGTTGATTTGAGGAAGGTGAAGCAGATGTGTAGGGATTACGAGGAGTTGAAGAGGGTTGCGGCGGTGGAGGGCGGTGATGAAGAGATGAAGGGGGTTTCGGAAGGTAAGGAGTTGGTTGGGGATGCAATGGAGAAGATTGCCAAGGAGTGGGATGCTCACAGGGAAGTGTTTTATCGACAGACGGGATTGAGTCAGAAACTGAATGAAGAAGAGCAGCAGCAGCAAGAAGATGACAGTTTCGACAAGGAACTCGAACAAATGCTCTCTGAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNAPc_SNAP43

Protein Analysis

206

Amino Acids

23.65

Weight (kDa)

5.11

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC1 PF09808 2 - 132 9.8e-31 Small nuclear RNA activating complex (SNAPc), subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AbsI CCTCGAGG 1 cut(s) 92
AccB7I CCANNNNNTGG 1 cut(s) 492
AccI GTMKAC 1 cut(s) 81
AccII CGCG 2 cut(s) 152, 266
AccIII TCCGGA 1 cut(s) 111
AciI CCGC 7 cut(s) 21, 152, 172, 278, 404, 407, 417
AcoI YGGCCR 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 129
AfiI CCNNNNNNNGG 3 cut(s) 76, 138, 492
AgsI TTSAA 5 cut(s) 7, 64, 76, 229, 394
AluBI AGCT 4 cut(s) 100, 109, 118, 256
AluI AGCT 4 cut(s) 100, 109, 118, 256
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 3 cut(s) 44, 47, 206
AlwNI CAGNNNCTG 1 cut(s) 544
Ama87I CYCGRG 1 cut(s) 92
Aor13HI TCCGGA 1 cut(s) 111
AoxI GGCC 2 cut(s) 22, 123
ApeKI GCWGC 3 cut(s) 559, 562, 565
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 136
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 3 cut(s) 178, 373, 431
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 102
BauI CACGAG 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 571, 574, 577
BccI CCATC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 146
BciVI GTATCC 1 cut(s) 97
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 3 cut(s) 44, 47, 206
BfuI GTATCC 1 cut(s) 97
BisI GCNGC 7 cut(s) 22, 153, 279, 405, 560, 563, 566
BlsI GCNGC 7 cut(s) 23, 154, 280, 406, 561, 564, 567
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 3 cut(s) 165, 457, 487
BpmI CTGGAG 2 cut(s) 200, 278
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 140
BsaAI YACGTR 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 4 cut(s) 132, 139, 162, 486
BsaWI WCCGGW 1 cut(s) 111
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 138, 492
Bse3DI GCAATG 1 cut(s) 477
BseAI TCCGGA 1 cut(s) 111
BseDI CCNNGG 4 cut(s) 132, 139, 162, 486
BseGI GGATG 5 cut(s) 180, 247, 345, 472, 502
BseLI CCNNNNNNNGG 3 cut(s) 76, 138, 492
BseMI GCAATG 1 cut(s) 477
BseRI GAGGAG 3 cut(s) 110, 329, 401
BseXI GCAGC 3 cut(s) 571, 574, 577
BseYI CCCAGC 1 cut(s) 54
Bsh1236I CGCG 2 cut(s) 152, 266
BshFI GGCC 2 cut(s) 24, 125
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 2 cut(s) 112, 139
BslI CCNNNNNNNGG 3 cut(s) 76, 138, 492
BsmAI GTCTC 3 cut(s) 44, 47, 206
BsmBI CGTCTC 1 cut(s) 206
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 2 cut(s) 24, 125
Bso31I GGTCTC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 111
BspACI CCGC 7 cut(s) 21, 152, 172, 278, 404, 407, 417
BspANI GGCC 2 cut(s) 24, 125
BspEI TCCGGA 1 cut(s) 111
BspFNI CGCG 2 cut(s) 152, 266
BspQI GCTCTTC 1 cut(s) 549
BspTNI GGTCTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 477
BssECI CCNNGG 4 cut(s) 132, 139, 162, 486
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 119
BssT1I CCWWGG 2 cut(s) 132, 486
Bst2BI CACGAG 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 41, 581
Bst6I CTCTTC 3 cut(s) 389, 420, 549
BstACI GRCGYC 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 85
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 5 cut(s) 180, 247, 345, 472, 502
BstFNI CGCG 2 cut(s) 152, 266
BstHHI GCGC 1 cut(s) 152
BstMAI GTCTC 3 cut(s) 44, 47, 206
BstMWI GCNNNNNNNGC 6 cut(s) 30, 64, 106, 115, 158, 565
BstSCI CCNGG 1 cut(s) 138
BstSNI TACGTA 1 cut(s) 85
BstUI CGCG 2 cut(s) 152, 266
BstV1I GCAGC 3 cut(s) 571, 574, 577
BsuI GTATCC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 24, 125
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 5 cut(s) 180, 247, 345, 472, 502
CaiI CAGNNNCTG 1 cut(s) 544
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 136
CseI GACGC 1 cut(s) 137
CviAII CATG 2 cut(s) 328, 618
CviJI RGCY 8 cut(s) 24, 58, 67, 100, 109, 118, 125, 256
CviKI_1 RGCY 8 cut(s) 24, 58, 67, 100, 109, 118, 125, 256
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 3 cut(s) 389, 420, 549
EarI CTCTTC 3 cut(s) 389, 420, 549
Ecl136II GAGCTC 1 cut(s) 100
Eco105I TACGTA 1 cut(s) 85
Eco130I CCWWGG 2 cut(s) 132, 486
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 100
EcoT14I CCWWGG 2 cut(s) 132, 486
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 2 cut(s) 132, 486
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 2 cut(s) 331, 621
FaiI YATR 2 cut(s) 329, 619
FatI CATG 2 cut(s) 327, 617
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 7 cut(s) 22, 153, 279, 405, 560, 563, 566
FokI GGATG 5 cut(s) 187, 254, 352, 479, 509
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 7 cut(s) 22, 153, 279, 405, 560, 563, 566
GlaI GCGC 1 cut(s) 151
GluI GCNGC 7 cut(s) 22, 153, 279, 405, 560, 563, 566
GsaI CCCAGC 1 cut(s) 58
GsuI CTGGAG 2 cut(s) 200, 278
HaeIII GGCC 2 cut(s) 24, 125
HapII CCGG 2 cut(s) 112, 139
HgaI GACGC 1 cut(s) 137
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 2 cut(s) 331, 621
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HinfI GANTC 3 cut(s) 7, 15, 535
HpaII CCGG 2 cut(s) 112, 139
HphI GGTGA 3 cut(s) 178, 373, 431
Hpy166II GTNNAC 2 cut(s) 82, 249
Hpy188I TCNGA 3 cut(s) 445, 540, 613
Hpy188III TCNNGA 2 cut(s) 103, 112
Hpy8I GTNNAC 2 cut(s) 82, 249
Hpy99I CGWCG 2 cut(s) 15, 131
HpyAV CCTTC 4 cut(s) 229, 352, 427, 440
HpyCH4III ACNGT 2 cut(s) 41, 581
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 470
HpyF10VI GCNNNNNNNGC 6 cut(s) 30, 64, 106, 115, 158, 565
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 2 cut(s) 331, 621
HspAI GCGC 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 111
LguI GCTCTTC 1 cut(s) 549
LmnI GCTCC 3 cut(s) 97, 114, 253
LpnPI CCDG 6 cut(s) 68, 125, 152, 164, 242, 490
Lsp1109I GCAGC 3 cut(s) 571, 574, 577
LweI GCATC 3 cut(s) 165, 457, 487
MaeII ACGT 1 cut(s) 84
MboII GAAGA 7 cut(s) 196, 406, 437, 490, 563, 566, 584
MhlI GDGCHC 1 cut(s) 102
MlyI GAGTC 2 cut(s) 9, 544
MroI TCCGGA 1 cut(s) 111
MseI TTAA 1 cut(s) 273
MspI CCGG 2 cut(s) 112, 139
MspR9I CCNGG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 193
MvnI CGCG 2 cut(s) 152, 266
MwoI GCNNNNNNNGC 6 cut(s) 30, 64, 106, 115, 158, 565
NciI CCSGG 1 cut(s) 140
NlaIII CATG 2 cut(s) 331, 621
PaeR7I CTCGAG 1 cut(s) 92
PciSI GCTCTTC 1 cut(s) 549
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 492
PkrI GCNGC 7 cut(s) 23, 154, 280, 406, 561, 564, 567
PleI GAGTC 2 cut(s) 9, 543
PpsI GAGTC 2 cut(s) 9, 543
Ppu21I YACGTR 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 136
PspXI VCTCGAGB 1 cut(s) 92
PstNI CAGNNNCTG 1 cut(s) 544
SacI GAGCTC 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 7 cut(s) 22, 153, 279, 405, 560, 563, 566
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 2 cut(s) 9, 544
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 3 cut(s) 165, 457, 487
Sfr274I CTCGAG 1 cut(s) 92
SinI GGWCC 1 cut(s) 136
SlaI CTCGAG 1 cut(s) 92
SmlI CTYRAG 2 cut(s) 92, 101
SmoI CTYRAG 2 cut(s) 92, 101
SnaBI TACGTA 1 cut(s) 85
SsiI CCGC 7 cut(s) 21, 152, 172, 278, 404, 407, 417
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 2 cut(s) 132, 486
TaaI ACNGT 2 cut(s) 41, 581
TaiI ACGT 1 cut(s) 87
TaqI TCGA 5 cut(s) 10, 93, 520, 585, 597
TauI GCSGC 4 cut(s) 24, 155, 281, 407
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TseI GCWGC 3 cut(s) 559, 562, 565
TspDTI ATGAA 3 cut(s) 438, 446, 564
TspGWI ACGGA 1 cut(s) 266
Van91I CCANNNNNTGG 1 cut(s) 492
VpaK11BI GGWCC 1 cut(s) 136
XhoI CTCGAG 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.