RLG00000019777

Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002506
Physical Location & Seq
Reverse (-)
56568243 .. 56573165
4923 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019777

Sequence Viewer

Length: 945 bp
ATGAGGATGGCAACAACGACGGGGACTTTGGTCCGGTGCTTGAGAAGCCAATCGAGCTTTAATATTCCGATGAGAGGAGTGGCAGCGAAAAAGGAGTCGCCGAGATTGGGCTTGAGGGGAGCGCGACATCGACGACCTGATATCCCAATTCGCCGCCGCCGATTCGACTCGCTTCACCGATATGAAGCAAGTCTGGCTCTCCAACAAAAGTTCTCCTACATCTACGACGCGCGTCCCACTTGCACCAATTCCCTCGCCCTCTTCATGCAATCCCTCTATTCCCACTCAATCGAACACCTAATCGCTCCCGATTCCTCCCTGTCACGAAGACTCGGCGGCCTCTACTGTCTCTACGAGACCCAGCCCTTCAAGCCCCCTTTCAAGGTCTACCTATCCCTCGAGGAGCTCAAGAAGCTCCGGAAGCTCGTGGCCGACGCCAAGGTCCGGGGCGTGAGTGCGGCGAGTGCCGTGGTGAAGCGGATGCTGGAGAAGAATGCGTTTCTGTTCGGGTGTGTGGAGACGAACGAGGGTTTGAAAGGGAAGGTGGATGAGTTGACGGAGCTGGAGAACGCGAGGATTAAAGCGGCATGTAAGAAGTTGTTTGATGATACCAAGATTGAGGAGTTTATTCACATGGATTTGGGGATGGAGGTTGATTTGAGGAAGGTGAAGCAGATGTGTAGGGACTATGAGGAGTTGAAGAGGGTTGCGGCGGTGGAGGGCGGTGATGAAGTGATGAAGGGCGTTTCGGAAGGTAAGGAGTTGGTTGGGGATGCAATGGAGAAGATTGCCAAGGAGTGGGATGCTCAGAGGGAAGTGTTTTATCGGCAGACGGGATTGAGTCAGAAACTGAATGAAGAAGAGCAGCAGCAGCAGCAGCGAGAAGAGGAGGGAGATGATGACAGTTTCGACAAGGAACTCGAAAAAATGCTCTCTGAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNAPc_SNAP43

Protein Analysis

315

Amino Acids

35.99

Weight (kDa)

8.39

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC1 PF09808 68 - 234 4.1e-34 Small nuclear RNA activating complex (SNAPc), subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 440
AbsI CCTCGAGG 1 cut(s) 398
AccB7I CCANNNNNTGG 1 cut(s) 798
AccI GTMKAC 1 cut(s) 387
AccII CGCG 4 cut(s) 124, 230, 232, 572
AccIII TCCGGA 1 cut(s) 417
AciI CCGC 9 cut(s) 154, 157, 336, 458, 478, 584, 710, 713, 723
AcoI YGGCCR 1 cut(s) 429
AcyI GRCGYC 1 cut(s) 435
AfiI CCNNNNNNNGG 5 cut(s) 74, 107, 382, 444, 798
AgsI TTSAA 4 cut(s) 370, 382, 535, 700
AluBI AGCT 5 cut(s) 57, 406, 415, 424, 562
AluI AGCT 5 cut(s) 57, 406, 415, 424, 562
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 3 cut(s) 350, 353, 512
AlwNI CAGNNNCTG 1 cut(s) 850
Ama87I CYCGRG 1 cut(s) 398
Aor13HI TCCGGA 1 cut(s) 417
AoxI GGCC 2 cut(s) 337, 429
ApeKI GCWGC 6 cut(s) 83, 865, 868, 871, 874, 877
ArsI GACNNNNNNTTYG 4 cut(s) 10, 42, 80, 112
AspLEI GCGC 2 cut(s) 124, 232
AspS9I GGNCC 2 cut(s) 31, 442
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 4 cut(s) 167, 484, 679, 737
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 2 cut(s) 31, 442
BanII GRGCYC 1 cut(s) 408
BauI CACGAG 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 6 cut(s) 95, 877, 880, 883, 886, 889
BccI CCATC 1 cut(s) 640
BceAI ACGGC 1 cut(s) 452
BcnI CCSGG 1 cut(s) 446
BcoDI GTCTC 3 cut(s) 350, 353, 512
Bme1390I CCNGG 1 cut(s) 446
Bme18I GGWCC 2 cut(s) 31, 442
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 2 cut(s) 31, 442
BmrFI CCNGG 1 cut(s) 446
BmsI GCATC 3 cut(s) 471, 763, 793
BoxI GACNNNNGTC 2 cut(s) 29, 231
BpiI GAAGAC 1 cut(s) 334
BpmI CTGGAG 2 cut(s) 506, 584
BpuEI CTTGAG 3 cut(s) 61, 133, 392
BpuMI CCSGG 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 435
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 4 cut(s) 438, 445, 468, 792
BsaWI WCCGGW 2 cut(s) 33, 417
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 107, 382, 444, 798
Bse3DI GCAATG 1 cut(s) 783
BseAI TCCGGA 1 cut(s) 417
BseDI CCNNGG 4 cut(s) 438, 445, 468, 792
BseGI GGATG 6 cut(s) 12, 486, 553, 651, 778, 808
BseLI CCNNNNNNNGG 5 cut(s) 74, 107, 382, 444, 798
BseMI GCAATG 1 cut(s) 783
BseMII CTCAG 1 cut(s) 821
BseRI GAGGAG 5 cut(s) 90, 416, 635, 707, 902
BseXI GCAGC 6 cut(s) 95, 877, 880, 883, 886, 889
BseYI CCCAGC 1 cut(s) 360
Bsh1236I CGCG 4 cut(s) 124, 230, 232, 572
BshFI GGCC 2 cut(s) 339, 431
BsiHKAI GWGCWC 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 3 cut(s) 34, 418, 445
BslFI GGGAC 3 cut(s) 37, 219, 698
BslI CCNNNNNNNGG 5 cut(s) 74, 107, 382, 444, 798
BsmAI GTCTC 3 cut(s) 350, 353, 512
BsmBI CGTCTC 1 cut(s) 512
BsmFI GGGAC 3 cut(s) 37, 219, 698
BsmI GAATGC 1 cut(s) 499
BsnI GGCC 2 cut(s) 339, 431
Bso31I GGTCTC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 408
Bsp13I TCCGGA 1 cut(s) 417
BspACI CCGC 9 cut(s) 154, 157, 336, 458, 478, 584, 710, 713, 723
BspANI GGCC 2 cut(s) 339, 431
BspCNI CTCAG 1 cut(s) 820
BspEI TCCGGA 1 cut(s) 417
BspFNI CGCG 4 cut(s) 124, 230, 232, 572
BspQI GCTCTTC 1 cut(s) 855
BspTNI GGTCTC 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 783
BssECI CCNNGG 4 cut(s) 438, 445, 468, 792
BssNI GRCGYC 1 cut(s) 435
BssSI CACGAG 1 cut(s) 425
BssT1I CCWWGG 2 cut(s) 438, 792
Bst2BI CACGAG 1 cut(s) 425
Bst4CI ACNGT 2 cut(s) 347, 905
Bst6I CTCTTC 4 cut(s) 266, 695, 855, 879
BstACI GRCGYC 1 cut(s) 435
BstDEI CTNAG 1 cut(s) 807
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 6 cut(s) 12, 486, 553, 651, 778, 808
BstFNI CGCG 4 cut(s) 124, 230, 232, 572
BstHHI GCGC 2 cut(s) 124, 232
BstMAI GTCTC 3 cut(s) 350, 353, 512
BstNSI RCATGY 1 cut(s) 591
BstPAI GACNNNNGTC 2 cut(s) 29, 231
BstSCI CCNGG 1 cut(s) 444
BstUI CGCG 4 cut(s) 124, 230, 232, 572
BstV1I GCAGC 6 cut(s) 95, 877, 880, 883, 886, 889
BstV2I GAAGAC 1 cut(s) 334
BsuRI GGCC 2 cut(s) 339, 431
BtgI CCRYGG 1 cut(s) 468
BtsCI GGATG 6 cut(s) 12, 486, 553, 651, 778, 808
CaiI CAGNNNCTG 1 cut(s) 850
CfoI GCGC 2 cut(s) 124, 232
Cfr13I GGNCC 2 cut(s) 31, 442
CseI GACGC 3 cut(s) 221, 236, 443
CviAII CATG 4 cut(s) 265, 588, 634, 942
DdeI CTNAG 1 cut(s) 807
DrdI GACNNNNNNGTC 1 cut(s) 440
DseDI GACNNNNNNGTC 1 cut(s) 440
EaeI YGGCCR 1 cut(s) 429
Eam1104I CTCTTC 4 cut(s) 266, 695, 855, 879
EarI CTCTTC 4 cut(s) 266, 695, 855, 879
Ecl136II GAGCTC 1 cut(s) 406
Eco130I CCWWGG 2 cut(s) 438, 792
Eco24I GRGCYC 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 350
Eco32I GATATC 1 cut(s) 142
Eco47I GGWCC 2 cut(s) 31, 442
Eco53kI GAGCTC 1 cut(s) 406
Eco88I CYCGRG 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 406
EcoRV GATATC 1 cut(s) 142
EcoT14I CCWWGG 2 cut(s) 438, 792
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 2 cut(s) 438, 792
Esp3I CGTCTC 1 cut(s) 512
FaeI CATG 4 cut(s) 268, 591, 637, 945
FaiI YATR 6 cut(s) 183, 266, 589, 635, 690, 943
FaqI GGGAC 3 cut(s) 37, 219, 698
FatI CATG 4 cut(s) 264, 587, 633, 941
FblI GTMKAC 1 cut(s) 387
FokI GGATG 6 cut(s) 19, 493, 560, 658, 785, 815
FriOI GRGCYC 1 cut(s) 408
GlaI GCGC 2 cut(s) 123, 231
GsaI CCCAGC 1 cut(s) 364
GsuI CTGGAG 2 cut(s) 506, 584
HaeIII GGCC 2 cut(s) 339, 431
HapII CCGG 3 cut(s) 34, 418, 445
HgaI GACGC 3 cut(s) 221, 236, 443
HhaI GCGC 2 cut(s) 124, 232
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 4 cut(s) 268, 591, 637, 945
Hin6I GCGC 2 cut(s) 122, 230
HinP1I GCGC 2 cut(s) 122, 230
HincII GTYRAC 1 cut(s) 555
HindII GTYRAC 1 cut(s) 555
HinfI GANTC 6 cut(s) 95, 162, 167, 311, 330, 841
HpaII CCGG 3 cut(s) 34, 418, 445
HphI GGTGA 4 cut(s) 167, 484, 679, 737
Hpy166II GTNNAC 2 cut(s) 388, 555
Hpy188I TCNGA 5 cut(s) 69, 751, 810, 846, 937
Hpy188III TCNNGA 4 cut(s) 308, 324, 409, 418
Hpy8I GTNNAC 2 cut(s) 388, 555
Hpy99I CGWCG 4 cut(s) 22, 135, 230, 437
HpyAV CCTTC 5 cut(s) 376, 535, 658, 733, 746
HpyCH4III ACNGT 2 cut(s) 347, 905
HpyCH4V TGCA 3 cut(s) 243, 268, 776
HpyF3I CTNAG 1 cut(s) 807
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 4 cut(s) 268, 591, 637, 945
HspAI GCGC 2 cut(s) 122, 230
Kpn2I TCCGGA 1 cut(s) 417
LguI GCTCTTC 1 cut(s) 855
LmnI GCTCC 5 cut(s) 119, 310, 403, 420, 559
LpnPI CCDG 9 cut(s) 47, 150, 179, 332, 374, 431, 458, 470, 548
Lsp1109I GCAGC 6 cut(s) 95, 877, 880, 883, 886, 889
LweI GCATC 3 cut(s) 471, 763, 793
MaeIII GTNAC 1 cut(s) 321
MboII GAAGA 8 cut(s) 253, 339, 502, 712, 796, 869, 872, 896
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 2 cut(s) 147, 247
MlyI GAGTC 4 cut(s) 104, 161, 324, 850
MmeI TCCRAC 1 cut(s) 226
MroI TCCGGA 1 cut(s) 417
MseI TTAA 2 cut(s) 60, 579
MslI CAYNNNNRTG 1 cut(s) 180
MspI CCGG 3 cut(s) 34, 418, 445
MspR9I CCNGG 1 cut(s) 446
Mva1269I GAATGC 1 cut(s) 499
MvnI CGCG 4 cut(s) 124, 230, 232, 572
NciI CCSGG 1 cut(s) 446
NlaIII CATG 4 cut(s) 268, 591, 637, 945
NmeAIII GCCGAG 2 cut(s) 126, 312
NmuCI GTSAC 1 cut(s) 321
NspI RCATGY 1 cut(s) 591
PaeR7I CTCGAG 1 cut(s) 398
PciSI GCTCTTC 1 cut(s) 855
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PctI GAATGC 1 cut(s) 499
PfeI GAWTC 2 cut(s) 162, 311
PflMI CCANNNNNTGG 1 cut(s) 798
PleI GAGTC 4 cut(s) 103, 161, 324, 849
PpsI GAGTC 4 cut(s) 103, 161, 324, 849
PshAI GACNNNNGTC 2 cut(s) 29, 231
Psp124BI GAGCTC 1 cut(s) 408
PspFI CCCAGC 1 cut(s) 360
PspPI GGNCC 2 cut(s) 31, 442
PspXI VCTCGAGB 1 cut(s) 398
PstNI CAGNNNCTG 1 cut(s) 850
RseI CAYNNNNRTG 1 cut(s) 180
SacI GAGCTC 1 cut(s) 408
SapI GCTCTTC 1 cut(s) 855
SaqAI TTAA 2 cut(s) 60, 579
Sau96I GGNCC 2 cut(s) 31, 442
SchI GAGTC 4 cut(s) 104, 161, 324, 850
ScrFI CCNGG 1 cut(s) 446
SduI GDGCHC 1 cut(s) 408
SfaNI GCATC 3 cut(s) 471, 763, 793
Sfr274I CTCGAG 1 cut(s) 398
SinI GGWCC 2 cut(s) 31, 442
SlaI CTCGAG 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 4 cut(s) 40, 112, 398, 407
SmoI CTYRAG 4 cut(s) 40, 112, 398, 407
Sse9I AATT 2 cut(s) 147, 247
SsiI CCGC 9 cut(s) 154, 157, 336, 458, 478, 584, 710, 713, 723
SspI AATATT 1 cut(s) 64
SstI GAGCTC 1 cut(s) 408
StyD4I CCNGG 1 cut(s) 444
StyI CCWWGG 2 cut(s) 438, 792
TaaI ACNGT 2 cut(s) 347, 905
TaqI TCGA 7 cut(s) 53, 130, 165, 291, 399, 909, 921
TasI AATT 2 cut(s) 147, 247
TauI GCSGC 6 cut(s) 156, 159, 339, 461, 587, 713
TfiI GAWTC 2 cut(s) 162, 311
Tru1I TTAA 2 cut(s) 60, 579
Tru9I TTAA 2 cut(s) 60, 579
TseFI GTSAC 1 cut(s) 321
TseI GCWGC 6 cut(s) 83, 865, 868, 871, 874, 877
Tsp45I GTSAC 1 cut(s) 321
TspDTI ATGAA 5 cut(s) 198, 253, 744, 752, 870
TspGWI ACGGA 1 cut(s) 572
Van91I CCANNNNNTGG 1 cut(s) 798
VpaK11BI GGWCC 2 cut(s) 31, 442
XceI RCATGY 1 cut(s) 591
XhoI CTCGAG 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.