Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002506

Physical Location & Seq

Genomic Coordinates Reverse (-)

41018824 .. 41023026

Gene Structure 4203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G493600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGATCTCACTCCGTTTAAGCGTGACATTGATGAGCTGATAGATGCATTTGCTGAGGGTGAATCAACGAGTTTGGCCGACATGAAGAGAATATGGCTTTCCAAAAAGTTCTCTTACATTTACGAGGCACGTCCTTCTACCAACTTGGCCTTCTTTATGCAGTCATTATATGCCCATTCAATTGGATACATAATCGGTACAGCTACTTTATCACACAGACTGGGTGGGCTCTATTGCCTCTTCTGTCTCTATGAGACTCAACCATTCAAACCTCCTTTTAAGATTTATCTATCTCTTGAAGAACTGAAGAAACTTCGAAAGCTGGTTATTAATGCAAAGGAACATGATATAAGAGTGGTATCTGCTTTGGTGAAAAGGATGCTAGAAAAGAATGTTTTCCTGTTTGGGTCTGTAGACACAAATGAAGGCTCTTTTACAGAGACGGTAGACCAACTGACACAGTTACAGAATGCTCGAGTTCAAGTTGCATACAAGGAGTTATTTGCTAATACTAAGATTGAGGACTTTCTCCACATGGATTTGGGAATGGAAGTTGACCTGAATATGCTCAAGAAAATGTCAACAGATTATGCAGAGGCCAAGAAAATAGCAATTAATGAGGCCAGCAAGGTCGTGGATGTTCAAGATATAAAGCACATATCAGAAGATAAGGAACTGGTTGGAGATGCAGTGGAGAAGATGGTAGGGCAGTGGGATGCTCAAAGAGAAGTGTTTTATCAACAAACAGGAGCAAATCAGAAGCTCCCTGAAGGAGAGCAGCAACTAGAACCACAGCAGCTGCAGCTGCAGCTGCAGCTGCTGAGTGATGACGAGAACTTTGATCAGGAATTGGAACAACTGCTATCTGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNAPc_SNAP43

Protein Analysis

292

Amino Acids

33.46

Weight (kDa)

4.86

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53270 AT3G53270 AT3G53270 AT3G53270 AT3G53270 AT3G53270 AT3G53270 AT3G53270 AT3G53270
fragaria_vesca	FvH4_6g31820
malus_domestica	MD05G1013300.v1.1 MD15G1345500.v1.1
prunus_persica	Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1
pyrus_communis	pycom05g00780
rosa_chinensis	RchiOBHm_Chr2g0138971
rosa_laevigata	RLG00000019772 RLG00000019777 RLG00000019782 RLG00000024840 RLG00000024842
rosa_multiflora	Rmu_co8208064.1_g000001 Rmu_sc0006014.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105820
rosa_rugosa	Rorug02G0353700
rosa_samantha	Rh2AG403600 Rh2AG403800 Rh2AG404000 Rh2BG414000 Rh2CG389700 Rh2CG389900 Rh2CG390100 Rh2DG423800
rosa_wichuraiana	Rw2G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	414, 447
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	75
AcuI	CTGAAG	2 cut(s)	326, 789
AfaI	GTAC	1 cut(s)	199
AgsI	TTSAA	5 cut(s)	180, 268, 299, 482, 644
AjiI	CACGTC	1 cut(s)	131
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	8 cut(s)	37, 203, 322, 763, 799, 805, 811, 817
AluI	AGCT	8 cut(s)	37, 203, 322, 763, 799, 805, 811, 817
Alw26I	GTCTC	3 cut(s)	248, 251, 434
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	2 cut(s)	799, 820
Ama87I	CYCGRG	1 cut(s)	474
AoxI	GGCC	4 cut(s)	75, 147, 597, 621
ApeKI	GCWGC	9 cut(s)	778, 796, 799, 802, 805, 808, 811, 814, 817
ArsI	GACNNNNNNTTYG	2 cut(s)	821, 853
AseI	ATTAAT	2 cut(s)	330, 615
Asp700I	GAANNNNTTC	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	71, 382
AsuII	TTCGAA	1 cut(s)	316
AvaI	CYCGRG	1 cut(s)	474
BanII	GRGCYC	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	9 cut(s)	786, 790, 792, 798, 804, 808, 814, 820, 826
BccI	CCATC	1 cut(s)	694
BciVI	GTATCC	1 cut(s)	179
BclI	TGATCA	1 cut(s)	841
BcoDI	GTCTC	3 cut(s)	248, 251, 434
BfaI	CTAG	2 cut(s)	383, 785
BfmI	CTRYAG	4 cut(s)	411, 800, 806, 812
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	9 cut(s)	779, 797, 800, 803, 806, 809, 812, 815, 818
BlsI	GCNGC	9 cut(s)	780, 798, 801, 804, 807, 810, 813, 816, 819
BmeT110I	CYCGRG	1 cut(s)	474
BmgBI	CACGTC	1 cut(s)	131
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	4 cut(s)	34, 369, 676, 706
BmuI	ACTGGG	1 cut(s)	230
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	554
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bse1I	ACTGG	2 cut(s)	225, 681
BseGI	GGATG	3 cut(s)	384, 643, 721
BseMII	CTCAG	2 cut(s)	45, 812
BseNI	ACTGG	2 cut(s)	225, 681
BseXI	GCAGC	9 cut(s)	786, 790, 792, 798, 804, 808, 814, 820, 826
BshFI	GGCC	4 cut(s)	77, 149, 599, 623
BsiHKCI	CYCGRG	1 cut(s)	474
BsmAI	GTCTC	3 cut(s)	248, 251, 434
BsmBI	CGTCTC	1 cut(s)	434
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	4 cut(s)	77, 149, 599, 623
BsoBI	CYCGRG	1 cut(s)	474
Bsp119I	TTCGAA	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	4, 841
BspANI	GGCC	4 cut(s)	77, 149, 599, 623
BspCNI	CTCAG	2 cut(s)	46, 813
BspMAI	CTGCAG	3 cut(s)	804, 810, 816
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	225, 681
BssMI	GATC	2 cut(s)	4, 841
Bst4CI	ACNGT	2 cut(s)	445, 462
Bst6I	CTCTTC	2 cut(s)	80, 245
BstBI	TTCGAA	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	625
BstDEI	CTNAG	3 cut(s)	54, 513, 821
BstF5I	GGATG	3 cut(s)	384, 643, 721
BstKTI	GATC	2 cut(s)	7, 844
BstMAI	GTCTC	3 cut(s)	248, 251, 434
BstMBI	GATC	2 cut(s)	4, 841
BstMWI	GCNNNNNNNGC	6 cut(s)	802, 805, 808, 811, 814, 817
BstSFI	CTRYAG	4 cut(s)	411, 800, 806, 812
BstV1I	GCAGC	9 cut(s)	786, 790, 792, 798, 804, 808, 814, 820, 826
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	4 cut(s)	77, 149, 599, 623
BtrI	CACGTC	1 cut(s)	131
BtsCI	GGATG	3 cut(s)	384, 643, 721
BtsI	GCAGTG	2 cut(s)	696, 716
BtsIMutI	CAGTG	2 cut(s)	696, 716
Cac8I	GCNNGC	1 cut(s)	625
CaiI	CAGNNNCTG	2 cut(s)	799, 820
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	4 cut(s)	82, 344, 535, 873
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	3 cut(s)	54, 513, 821
DpnI	GATC	2 cut(s)	6, 843
DpnII	GATC	2 cut(s)	4, 841
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	2 cut(s)	80, 245
EarI	CTCTTC	2 cut(s)	80, 245
Eco24I	GRGCYC	1 cut(s)	231
Eco57I	CTGAAG	2 cut(s)	326, 789
Eco88I	CYCGRG	1 cut(s)	474
EcoT22I	ATGCAT	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	434
FaeI	CATG	4 cut(s)	85, 347, 538, 876
FatI	CATG	4 cut(s)	81, 343, 534, 872
FbaI	TGATCA	1 cut(s)	841
FblI	GTMKAC	2 cut(s)	414, 447
Fnu4HI	GCNGC	9 cut(s)	779, 797, 800, 803, 806, 809, 812, 815, 818
FokI	GGATG	3 cut(s)	391, 650, 728
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	9 cut(s)	779, 797, 800, 803, 806, 809, 812, 815, 818
FspBI	CTAG	2 cut(s)	383, 785
GluI	GCNGC	9 cut(s)	779, 797, 800, 803, 806, 809, 812, 815, 818
HaeIII	GGCC	4 cut(s)	77, 149, 599, 623
Hin1II	CATG	4 cut(s)	85, 347, 538, 876
HincII	GTYRAC	2 cut(s)	556, 582
HindII	GTYRAC	2 cut(s)	556, 582
HinfI	GANTC	2 cut(s)	62, 256
HphI	GGTGA	2 cut(s)	71, 382
Hpy166II	GTNNAC	4 cut(s)	415, 448, 556, 582
Hpy188I	TCNGA	3 cut(s)	664, 759, 868
Hpy188III	TCNNGA	4 cut(s)	296, 571, 644, 845
Hpy8I	GTNNAC	4 cut(s)	415, 448, 556, 582
HpyAV	CCTTC	4 cut(s)	144, 160, 419, 764
HpyCH4III	ACNGT	2 cut(s)	445, 462
HpyCH4IV	ACGT	1 cut(s)	130
HpyCH4V	TGCA	9 cut(s)	47, 160, 335, 488, 593, 689, 802, 808, 814
HpyF10VI	GCNNNNNNNGC	6 cut(s)	802, 805, 808, 811, 814, 817
HpyF3I	CTNAG	3 cut(s)	54, 513, 821
HpySE526I	ACGT	1 cut(s)	130
Hsp92II	CATG	4 cut(s)	85, 347, 538, 876
Ksp22I	TGATCA	1 cut(s)	841
Kzo9I	GATC	2 cut(s)	4, 841
LmnI	GCTCC	2 cut(s)	749, 768
LpnPI	CCDG	9 cut(s)	206, 308, 413, 572, 637, 662, 732, 780, 830
Lsp1109I	GCAGC	9 cut(s)	786, 790, 792, 798, 804, 808, 814, 820, 826
LweI	GCATC	4 cut(s)	34, 369, 676, 706
MaeI	CTAG	2 cut(s)	383, 785
MaeII	ACGT	1 cut(s)	130
MaeIII	GTNAC	2 cut(s)	23, 462
MalI	GATC	2 cut(s)	6, 843
MboI	GATC	2 cut(s)	4, 841
MboII	GAAGA	6 cut(s)	97, 232, 311, 319, 677, 709
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	3 cut(s)	180, 612, 848
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	661
MnlI	CCTC	7 cut(s)	49, 118, 248, 282, 514, 589, 613
Mph1103I	ATGCAT	1 cut(s)	49
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	4 cut(s)	18, 279, 330, 615
MspA1I	CMGCKG	4 cut(s)	799, 805, 811, 817
MunI	CAATTG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	475
MwoI	GCNNNNNNNGC	6 cut(s)	802, 805, 808, 811, 814, 817
NdeII	GATC	2 cut(s)	4, 841
NlaIII	CATG	4 cut(s)	85, 347, 538, 876
NmuCI	GTSAC	1 cut(s)	23
NsiI	ATGCAT	1 cut(s)	49
NspV	TTCGAA	1 cut(s)	316
PaeR7I	CTCGAG	1 cut(s)	474
PctI	GAATGC	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	9 cut(s)	780, 798, 801, 804, 807, 810, 813, 816, 819
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PshBI	ATTAAT	2 cut(s)	330, 615
PspXI	VCTCGAGB	1 cut(s)	474
PstI	CTGCAG	3 cut(s)	804, 810, 816
PstNI	CAGNNNCTG	2 cut(s)	799, 820
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	4 cut(s)	799, 805, 811, 817
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SaqAI	TTAA	4 cut(s)	18, 279, 330, 615
SatI	GCNGC	9 cut(s)	779, 797, 800, 803, 806, 809, 812, 815, 818
Sau3AI	GATC	2 cut(s)	4, 841
SchI	GAGTC	1 cut(s)	250
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	4 cut(s)	34, 369, 676, 706
SfcI	CTRYAG	4 cut(s)	411, 800, 806, 812
Sfr274I	CTCGAG	1 cut(s)	474
SfuI	TTCGAA	1 cut(s)	316
SlaI	CTCGAG	1 cut(s)	474
SmlI	CTYRAG	2 cut(s)	474, 569
SmoI	CTYRAG	2 cut(s)	474, 569
Sse9I	AATT	3 cut(s)	180, 612, 848
SspMI	CTAG	2 cut(s)	383, 785
TaaI	ACNGT	2 cut(s)	445, 462
TaiI	ACGT	1 cut(s)	133
TaqI	TCGA	2 cut(s)	316, 475
TasI	AATT	3 cut(s)	180, 612, 848
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	4 cut(s)	18, 279, 330, 615
Tru9I	TTAA	4 cut(s)	18, 279, 330, 615
TscAI	CASTG	2 cut(s)	696, 716
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	9 cut(s)	778, 796, 799, 802, 805, 808, 811, 814, 817
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	98, 438
TspRI	CASTG	2 cut(s)	696, 716
VspI	ATTAAT	2 cut(s)	330, 615
XcmI	CCANNNNNNNNNTGG	1 cut(s)	631
XhoI	CTCGAG	1 cut(s)	474
XmiI	GTMKAC	2 cut(s)	414, 447
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	2 cut(s)	383, 785
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.