Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8208064.1

Orthogroup ID

OG0002506

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 695

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8208064.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 694 bp

atgaagcaagtctggctctccaacaagttctcctacatctacgacgcgcgtcccagttgcaccaattccctcgccctcttcatgcaatccctctattcccactcaatcggacacctaatcgctcccgattcctccctgtcacgacggctcggcggcctctactgcctctactgtctctacgagacccagcccttgaagccccctttcaaggtctacctatccctcggggagctcaagaagctccggaagctcgcggccgacgccagggtccggggcgtgagcgcggcgagtgccgtggtgaagcggatgctggagaagaatgcgtttctgttcgggtgtgtggagacgaacgagggtttgaaagggaaggtggatgagttgacggagctggagaacgccaggattaaagcggcgtgcaacaagttgtttgatgataccaagattgaggagtttattcacatggatttggggatggaggttgatttgagcaaggtgaagcagatgtgtagggattacgaggagttgaagagggttgcggcggtggagggccgtgatgaagagatgaagggggtttcggaaggtaaggagttggttggggatgcgatggagaagattgccaaggagtgggatgctcagagggaagtgttttatcggcagacgggattgagtcagaaactgaatgaagaagagcagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNAPc_SNAP43

Protein Analysis

231

Amino Acids

26.28

Weight (kDa)

6.37

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53270 AT3G53270 AT3G53270 AT3G53270 AT3G53270 AT3G53270 AT3G53270 AT3G53270 AT3G53270
fragaria_vesca	FvH4_6g31820
malus_domestica	MD05G1013300.v1.1 MD15G1345500.v1.1
prunus_persica	Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1
pyrus_communis	pycom05g00780
rosa_chinensis	RchiOBHm_Chr2g0138971
rosa_laevigata	RLG00000019772 RLG00000019777 RLG00000019782 RLG00000024840 RLG00000024842
rosa_multiflora	Rmu_co8208064.1_g000001 Rmu_sc0006014.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105820
rosa_rugosa	Rorug02G0353700
rosa_samantha	Rh2AG403600 Rh2AG403800 Rh2AG404000 Rh2BG414000 Rh2CG389700 Rh2CG389900 Rh2CG390100 Rh2DG423800
rosa_wichuraiana	Rw2G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AccB7I	CCANNNNNTGG	1 cut(s)	624
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	4 cut(s)	47, 49, 254, 284
AccIII	TCCGGA	1 cut(s)	243
AciI	CCGC	7 cut(s)	153, 254, 284, 304, 410, 536, 539
AcoI	YGGCCR	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	261
AfiI	CCNNNNNNNGG	4 cut(s)	208, 264, 270, 624
AgsI	TTSAA	4 cut(s)	196, 208, 361, 526
AjnI	CCWGG	2 cut(s)	263, 398
AluBI	AGCT	4 cut(s)	232, 241, 250, 388
AluI	AGCT	4 cut(s)	232, 241, 250, 388
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	3 cut(s)	176, 179, 338
AlwNI	CAGNNNCTG	1 cut(s)	676
Ama87I	CYCGRG	1 cut(s)	224
Aor13HI	TCCGGA	1 cut(s)	243
AoxI	GGCC	3 cut(s)	154, 255, 547
ApeKI	GCWGC	1 cut(s)	691
AspLEI	GCGC	2 cut(s)	49, 284
AspS9I	GGNCC	2 cut(s)	268, 547
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	310, 505
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	234
BccI	CCATC	2 cut(s)	466, 598
BceAI	ACGGC	3 cut(s)	161, 278, 534
BciT130I	CCWGG	2 cut(s)	265, 400
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	3 cut(s)	176, 179, 338
BisI	GCNGC	6 cut(s)	154, 255, 285, 411, 537, 692
BlsI	GCNGC	6 cut(s)	155, 256, 286, 412, 538, 693
Bme1390I	CCNGG	3 cut(s)	265, 272, 400
Bme18I	GGWCC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	268, 547
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	3 cut(s)	265, 272, 400
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	3 cut(s)	297, 589, 619
BmuI	ACTGGG	1 cut(s)	48
BoxI	GACNNNNGTC	1 cut(s)	48
BpmI	CTGGAG	2 cut(s)	332, 410
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	5 cut(s)	223, 264, 271, 294, 618
BsaWI	WCCGGW	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 264, 270, 624
Bse1I	ACTGG	1 cut(s)	54
BseAI	TCCGGA	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	265, 400
BseDI	CCNNGG	5 cut(s)	223, 264, 271, 294, 618
BseGI	GGATG	5 cut(s)	312, 379, 477, 604, 634
BseLI	CCNNNNNNNGG	4 cut(s)	208, 264, 270, 624
BseMII	CTCAG	1 cut(s)	647
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	2 cut(s)	461, 533
BseX3I	CGGCCG	1 cut(s)	255
BseYI	CCCAGC	1 cut(s)	186
Bsh1236I	CGCG	4 cut(s)	47, 49, 254, 284
Bsh1285I	CGRYCG	1 cut(s)	258
BshFI	GGCC	3 cut(s)	156, 257, 549
BsiEI	CGRYCG	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	2 cut(s)	244, 271
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	4 cut(s)	208, 264, 270, 624
BsmAI	GTCTC	3 cut(s)	176, 179, 338
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	3 cut(s)	156, 257, 549
Bso31I	GGTCTC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp13I	TCCGGA	1 cut(s)	243
BspACI	CCGC	7 cut(s)	153, 254, 284, 304, 410, 536, 539
BspANI	GGCC	3 cut(s)	156, 257, 549
BspCNI	CTCAG	1 cut(s)	646
BspEI	TCCGGA	1 cut(s)	243
BspFNI	CGCG	4 cut(s)	47, 49, 254, 284
BspLI	GGNNCC	1 cut(s)	269
BspQI	GCTCTTC	1 cut(s)	681
BspTNI	GGTCTC	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	5 cut(s)	223, 264, 271, 294, 618
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	618
Bst2UI	CCWGG	2 cut(s)	265, 400
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	4 cut(s)	83, 521, 552, 681
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	252, 415
BstDEI	CTNAG	1 cut(s)	633
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	5 cut(s)	312, 379, 477, 604, 634
BstFNI	CGCG	4 cut(s)	47, 49, 254, 284
BstHHI	GCGC	2 cut(s)	49, 284
BstMAI	GTCTC	3 cut(s)	176, 179, 338
BstMCI	CGRYCG	1 cut(s)	258
BstMWI	GCNNNNNNNGC	7 cut(s)	13, 162, 196, 238, 247, 260, 290
BstNI	CCWGG	2 cut(s)	265, 400
BstPAI	GACNNNNGTC	1 cut(s)	48
BstSCI	CCNGG	3 cut(s)	263, 270, 398
BstUI	CGCG	4 cut(s)	47, 49, 254, 284
BstZI	CGGCCG	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	156, 257, 549
BtgI	CCRYGG	1 cut(s)	294
BtgZI	GCGATG	1 cut(s)	617
BtsCI	GGATG	5 cut(s)	312, 379, 477, 604, 634
Cac8I	GCNNGC	2 cut(s)	252, 415
CaiI	CAGNNNCTG	1 cut(s)	676
CfoI	GCGC	2 cut(s)	49, 284
Cfr13I	GGNCC	2 cut(s)	268, 547
CseI	GACGC	3 cut(s)	38, 53, 269
CviAII	CATG	2 cut(s)	82, 460
DdeI	CTNAG	1 cut(s)	633
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	1 cut(s)	255
EagI	CGGCCG	1 cut(s)	255
Eam1104I	CTCTTC	4 cut(s)	83, 521, 552, 681
EarI	CTCTTC	4 cut(s)	83, 521, 552, 681
Ecl136II	GAGCTC	1 cut(s)	232
EclXI	CGGCCG	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	618
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	268
Eco52I	CGGCCG	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	263, 398
EcoT14I	CCWWGG	1 cut(s)	618
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	618
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	2 cut(s)	85, 463
FaiI	YATR	2 cut(s)	83, 461
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	2 cut(s)	81, 459
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	6 cut(s)	154, 255, 285, 411, 537, 692
FokI	GGATG	5 cut(s)	319, 386, 484, 611, 641
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	6 cut(s)	154, 255, 285, 411, 537, 692
GlaI	GCGC	2 cut(s)	48, 283
GluI	GCNGC	6 cut(s)	154, 255, 285, 411, 537, 692
GsaI	CCCAGC	1 cut(s)	190
GsuI	CTGGAG	2 cut(s)	332, 410
HaeIII	GGCC	3 cut(s)	156, 257, 549
HapII	CCGG	2 cut(s)	244, 271
HgaI	GACGC	3 cut(s)	38, 53, 269
HhaI	GCGC	2 cut(s)	49, 284
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	85, 463
Hin6I	GCGC	2 cut(s)	47, 282
HinP1I	GCGC	2 cut(s)	47, 282
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	2 cut(s)	128, 667
HpaII	CCGG	2 cut(s)	244, 271
HphI	GGTGA	2 cut(s)	310, 505
Hpy166II	GTNNAC	2 cut(s)	214, 381
Hpy188I	TCNGA	4 cut(s)	110, 577, 636, 672
Hpy188III	TCNNGA	4 cut(s)	125, 141, 235, 244
Hpy8I	GTNNAC	2 cut(s)	214, 381
Hpy99I	CGWCG	3 cut(s)	47, 147, 263
HpyAV	CCTTC	3 cut(s)	361, 559, 572
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	3 cut(s)	60, 85, 417
HpyF10VI	GCNNNNNNNGC	7 cut(s)	13, 162, 196, 238, 247, 260, 290
HpyF3I	CTNAG	1 cut(s)	633
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	85, 463
HspAI	GCGC	2 cut(s)	47, 282
Kpn2I	TCCGGA	1 cut(s)	243
LguI	GCTCTTC	1 cut(s)	681
LmnI	GCTCC	4 cut(s)	127, 229, 246, 385
LweI	GCATC	3 cut(s)	297, 589, 619
MaeIII	GTNAC	1 cut(s)	138
MboII	GAAGA	5 cut(s)	70, 328, 538, 569, 622
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	1 cut(s)	64
MlyI	GAGTC	1 cut(s)	676
MmeI	TCCRAC	1 cut(s)	45
MroI	TCCGGA	1 cut(s)	243
MseI	TTAA	1 cut(s)	405
MspI	CCGG	2 cut(s)	244, 271
MspR9I	CCNGG	3 cut(s)	265, 272, 400
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	2 cut(s)	265, 400
MvnI	CGCG	4 cut(s)	47, 49, 254, 284
MwoI	GCNNNNNNNGC	7 cut(s)	13, 162, 196, 238, 247, 260, 290
NciI	CCSGG	1 cut(s)	272
NlaIII	CATG	2 cut(s)	85, 463
NlaIV	GGNNCC	1 cut(s)	269
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	681
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	128
PflMI	CCANNNNNTGG	1 cut(s)	624
PkrI	GCNGC	6 cut(s)	155, 256, 286, 412, 538, 693
PleI	GAGTC	1 cut(s)	675
PpsI	GAGTC	1 cut(s)	675
PshAI	GACNNNNGTC	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	263, 398
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	263, 398
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	2 cut(s)	268, 547
PstNI	CAGNNNCTG	1 cut(s)	676
SacI	GAGCTC	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	681
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	6 cut(s)	154, 255, 285, 411, 537, 692
Sau96I	GGNCC	2 cut(s)	268, 547
SchI	GAGTC	1 cut(s)	676
ScrFI	CCNGG	3 cut(s)	265, 272, 400
SduI	GDGCHC	1 cut(s)	234
SfaNI	GCATC	3 cut(s)	297, 589, 619
SinI	GGWCC	1 cut(s)	268
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	1 cut(s)	64
SsiI	CCGC	7 cut(s)	153, 254, 284, 304, 410, 536, 539
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	3 cut(s)	263, 270, 398
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	1 cut(s)	173
TasI	AATT	1 cut(s)	64
TauI	GCSGC	5 cut(s)	156, 257, 287, 413, 539
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	1 cut(s)	691
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	4 cut(s)	17, 70, 570, 578
TspGWI	ACGGA	1 cut(s)	398
Van91I	CCANNNNNTGG	1 cut(s)	624
VpaK11BI	GGWCC	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.