RLG00000019782

Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002506
Physical Location & Seq
Forward (+)
56690814 .. 56692316
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019782

Sequence Viewer

Length: 855 bp
ATGAAGCGCGACATCGACGACCTGATATCCCAATTCGCCGCCGCCGATTCGACTCGCTTCACCGATATGAAGCAAGTCTGGCTCTCCAACAAGTTCTCCTACATCTACGACGCGCGTCCCACTTGCACCAATTCCCTCGCCCTCTTCATGCAATCCCTCTATTCCCACTCAATCAGACACCTAATCGCTCCCGATTCCTCCCTGTCACGAAGACTCGGCGGCCTCTACTGCCTCTACTGTCTCTACGAGACCCAGCCCTTCAAGCCCCCTTTCAAGGTCTACCTATCCCTCGAGGAGCTCAAGAAGCTCCGGAAGCTCGTGGCCGACGCCAAGGTCCGGGGCGTGAGTGCGGCGAGTGCCGTGGTGAAGCGGATGCTGGAGAAGAATGCGTTTCTGTTCGGGTGTGTGGAGACGAACGAGGGTTTGAAAGGGAAGGTGGATGAGTTGACGGAGCTGGAGAACGCGAGGATTAAAGCGGCGTGTAAGAAGTTGTTTGATGATACCAAGATTGAAGAGTTTATTCACATGGATTTGGGGATGGAGGTTGATTTGAGGAAGGTGAAGCAGATGTGTAGGGATTATGAGGAGTTGAAGAGGGTTGCGGCGGTGGAGGGCGGTGATGAAGAGATGAAGGGCGTTTCGGAAGGTAAGGAGTTGGTTGGGGATGCAATGGAGAAGATTGCCAAGGACAGCGAGAAGAGGAGGGAGATGATGACAGTTTCGACAAGGAACTCGAAAAAATGCTCTCTGAAGCATGATGGTGACTGTAGGTTTACCCAATGCATAAAAAGCAAGAATATGTTTGTGAAGCAGTGCTTAATGAGTTCTGAAATGATTAGGTTGTGCAGCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNAPc_SNAP43

Protein Analysis

285

Amino Acids

32.43

Weight (kDa)

8.75

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC1 PF09808 1 - 198 1.4e-52 Small nuclear RNA activating complex (SNAPc), subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AbsI CCTCGAGG 1 cut(s) 290
AccI GTMKAC 1 cut(s) 279
AccII CGCG 4 cut(s) 9, 113, 115, 464
AccIII TCCGGA 1 cut(s) 309
AciI CCGC 9 cut(s) 39, 42, 219, 350, 370, 476, 602, 605, 615
AcoI YGGCCR 1 cut(s) 321
AcuI CTGAAG 1 cut(s) 770
AcyI GRCGYC 1 cut(s) 327
AfiI CCNNNNNNNGG 2 cut(s) 274, 336
AgsI TTSAA 5 cut(s) 262, 274, 427, 512, 592
AluBI AGCT 4 cut(s) 298, 307, 316, 454
AluI AGCT 4 cut(s) 298, 307, 316, 454
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 3 cut(s) 242, 245, 404
Ama87I CYCGRG 1 cut(s) 290
Aor13HI TCCGGA 1 cut(s) 309
AoxI GGCC 2 cut(s) 220, 321
ApeKI GCWGC 1 cut(s) 846
AspLEI GCGC 2 cut(s) 9, 115
AspS9I GGNCC 1 cut(s) 334
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 5 cut(s) 52, 376, 571, 629, 773
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 1 cut(s) 334
BanII GRGCYC 1 cut(s) 300
BauI CACGAG 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 300
BccI CCATC 2 cut(s) 532, 752
BceAI ACGGC 1 cut(s) 344
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 3 cut(s) 242, 245, 404
BfmI CTRYAG 1 cut(s) 766
BisI GCNGC 7 cut(s) 39, 42, 220, 351, 477, 603, 847
BlsI GCNGC 7 cut(s) 40, 43, 221, 352, 478, 604, 848
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 2 cut(s) 363, 655
BoxI GACNNNNGTC 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 217
BpmI CTGGAG 2 cut(s) 398, 476
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 4 cut(s) 330, 337, 360, 684
BsaWI WCCGGW 1 cut(s) 309
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 336
Bse3DI GCAATG 1 cut(s) 675
BseAI TCCGGA 1 cut(s) 309
BseDI CCNNGG 4 cut(s) 330, 337, 360, 684
BseGI GGATG 4 cut(s) 378, 445, 543, 670
BseLI CCNNNNNNNGG 2 cut(s) 274, 336
BseMI GCAATG 1 cut(s) 675
BseRI GAGGAG 3 cut(s) 308, 599, 715
BseYI CCCAGC 1 cut(s) 252
Bsh1236I CGCG 4 cut(s) 9, 113, 115, 464
BshFI GGCC 2 cut(s) 222, 323
BsiHKAI GWGCWC 1 cut(s) 300
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 2 cut(s) 310, 337
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 274, 336
BsmAI GTCTC 3 cut(s) 242, 245, 404
BsmBI CGTCTC 1 cut(s) 404
BsmFI GGGAC 1 cut(s) 102
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 2 cut(s) 222, 323
Bso31I GGTCTC 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 300
Bsp13I TCCGGA 1 cut(s) 309
BspACI CCGC 9 cut(s) 39, 42, 219, 350, 370, 476, 602, 605, 615
BspANI GGCC 2 cut(s) 222, 323
BspEI TCCGGA 1 cut(s) 309
BspFNI CGCG 4 cut(s) 9, 113, 115, 464
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 675
BssECI CCNNGG 4 cut(s) 330, 337, 360, 684
BssNI GRCGYC 1 cut(s) 327
BssSI CACGAG 1 cut(s) 317
BssT1I CCWWGG 2 cut(s) 330, 684
Bst2BI CACGAG 1 cut(s) 317
Bst4CI ACNGT 3 cut(s) 239, 718, 767
Bst6I CTCTTC 5 cut(s) 149, 507, 587, 618, 692
BstACI GRCGYC 1 cut(s) 327
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 4 cut(s) 378, 445, 543, 670
BstFNI CGCG 4 cut(s) 9, 113, 115, 464
BstHHI GCGC 2 cut(s) 9, 115
BstMAI GTCTC 3 cut(s) 242, 245, 404
BstMWI GCNNNNNNNGC 7 cut(s) 79, 228, 262, 304, 313, 356, 789
BstPAI GACNNNNGTC 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 336
BstSFI CTRYAG 1 cut(s) 766
BstUI CGCG 4 cut(s) 9, 113, 115, 464
BstV2I GAAGAC 1 cut(s) 217
BsuRI GGCC 2 cut(s) 222, 323
BtgI CCRYGG 1 cut(s) 360
BtsCI GGATG 4 cut(s) 378, 445, 543, 670
BtsI GCAGTG 1 cut(s) 818
BtsIMutI CAGTG 1 cut(s) 818
CfoI GCGC 2 cut(s) 9, 115
Cfr13I GGNCC 1 cut(s) 334
CseI GACGC 3 cut(s) 104, 119, 335
CviAII CATG 3 cut(s) 148, 526, 755
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 5 cut(s) 149, 507, 587, 618, 692
EarI CTCTTC 5 cut(s) 149, 507, 587, 618, 692
Ecl136II GAGCTC 1 cut(s) 298
Eco130I CCWWGG 2 cut(s) 330, 684
Eco24I GRGCYC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 334
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 770
Eco88I CYCGRG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 298
EcoRV GATATC 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 330, 684
EcoT22I ATGCAT 1 cut(s) 785
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 2 cut(s) 330, 684
Esp3I CGTCTC 1 cut(s) 404
FaeI CATG 3 cut(s) 151, 529, 758
FaiI YATR 8 cut(s) 68, 149, 527, 582, 756, 785, 800, 853
FalI AAGNNNNNCTT 2 cut(s) 800, 832
FaqI GGGAC 1 cut(s) 102
FatI CATG 3 cut(s) 147, 525, 754
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 7 cut(s) 39, 42, 220, 351, 477, 603, 847
FokI GGATG 4 cut(s) 385, 452, 550, 677
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 7 cut(s) 39, 42, 220, 351, 477, 603, 847
GlaI GCGC 2 cut(s) 8, 114
GluI GCNGC 7 cut(s) 39, 42, 220, 351, 477, 603, 847
GsaI CCCAGC 1 cut(s) 256
GsuI CTGGAG 2 cut(s) 398, 476
HaeIII GGCC 2 cut(s) 222, 323
HapII CCGG 2 cut(s) 310, 337
HgaI GACGC 3 cut(s) 104, 119, 335
HhaI GCGC 2 cut(s) 9, 115
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 3 cut(s) 151, 529, 758
Hin6I GCGC 2 cut(s) 7, 113
HinP1I GCGC 2 cut(s) 7, 113
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HinfI GANTC 4 cut(s) 47, 52, 194, 213
HpaII CCGG 2 cut(s) 310, 337
HphI GGTGA 5 cut(s) 52, 376, 571, 629, 773
Hpy166II GTNNAC 3 cut(s) 280, 447, 774
Hpy188I TCNGA 4 cut(s) 176, 643, 750, 829
Hpy188III TCNNGA 4 cut(s) 191, 207, 301, 310
Hpy8I GTNNAC 3 cut(s) 280, 447, 774
Hpy99I CGWCG 3 cut(s) 20, 113, 329
HpyAV CCTTC 5 cut(s) 268, 427, 550, 625, 638
HpyCH4III ACNGT 3 cut(s) 239, 718, 767
HpyCH4V TGCA 5 cut(s) 126, 151, 668, 783, 846
HpyF10VI GCNNNNNNNGC 7 cut(s) 79, 228, 262, 304, 313, 356, 789
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 3 cut(s) 151, 529, 758
HspAI GCGC 2 cut(s) 7, 113
Kpn2I TCCGGA 1 cut(s) 309
LmnI GCTCC 4 cut(s) 193, 295, 312, 451
LpnPI CCDG 8 cut(s) 35, 64, 215, 266, 323, 350, 362, 440
LweI GCATC 2 cut(s) 363, 655
MaeIII GTNAC 2 cut(s) 204, 761
MboII GAAGA 8 cut(s) 136, 222, 394, 524, 604, 635, 688, 709
MhlI GDGCHC 1 cut(s) 300
MluCI AATT 2 cut(s) 32, 130
MlyI GAGTC 2 cut(s) 46, 207
MmeI TCCRAC 1 cut(s) 111
Mph1103I ATGCAT 1 cut(s) 785
MroI TCCGGA 1 cut(s) 309
MseI TTAA 2 cut(s) 471, 818
MslI CAYNNNNRTG 2 cut(s) 65, 759
MspI CCGG 2 cut(s) 310, 337
MspR9I CCNGG 1 cut(s) 338
Mva1269I GAATGC 1 cut(s) 391
MvnI CGCG 4 cut(s) 9, 113, 115, 464
MwoI GCNNNNNNNGC 7 cut(s) 79, 228, 262, 304, 313, 356, 789
NciI CCSGG 1 cut(s) 338
NlaIII CATG 3 cut(s) 151, 529, 758
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 2 cut(s) 204, 761
NsiI ATGCAT 1 cut(s) 785
PaeR7I CTCGAG 1 cut(s) 290
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 2 cut(s) 47, 194
PkrI GCNGC 7 cut(s) 40, 43, 221, 352, 478, 604, 848
PleI GAGTC 2 cut(s) 46, 207
PpsI GAGTC 2 cut(s) 46, 207
PshAI GACNNNNGTC 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 334
PspXI VCTCGAGB 1 cut(s) 290
RseI CAYNNNNRTG 2 cut(s) 65, 759
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 2 cut(s) 471, 818
SatI GCNGC 7 cut(s) 39, 42, 220, 351, 477, 603, 847
Sau96I GGNCC 1 cut(s) 334
SchI GAGTC 2 cut(s) 46, 207
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 1 cut(s) 300
SfaNI GCATC 2 cut(s) 363, 655
SfcI CTRYAG 1 cut(s) 766
Sfr274I CTCGAG 1 cut(s) 290
SinI GGWCC 1 cut(s) 334
SlaI CTCGAG 1 cut(s) 290
SmiMI CAYNNNNRTG 2 cut(s) 65, 759
SmlI CTYRAG 2 cut(s) 290, 299
SmoI CTYRAG 2 cut(s) 290, 299
Sse9I AATT 2 cut(s) 32, 130
SsiI CCGC 9 cut(s) 39, 42, 219, 350, 370, 476, 602, 605, 615
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 2 cut(s) 330, 684
TaaI ACNGT 3 cut(s) 239, 718, 767
TaqI TCGA 5 cut(s) 15, 50, 291, 722, 734
TasI AATT 2 cut(s) 32, 130
TauI GCSGC 6 cut(s) 41, 44, 222, 353, 479, 605
TfiI GAWTC 2 cut(s) 47, 194
Tru1I TTAA 2 cut(s) 471, 818
Tru9I TTAA 2 cut(s) 471, 818
TscAI CASTG 1 cut(s) 818
TseFI GTSAC 2 cut(s) 204, 761
TseI GCWGC 1 cut(s) 846
Tsp45I GTSAC 2 cut(s) 204, 761
TspDTI ATGAA 5 cut(s) 17, 83, 136, 636, 644
TspGWI ACGGA 1 cut(s) 464
TspRI CASTG 1 cut(s) 818
VpaK11BI GGWCC 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 290
XmiI GTMKAC 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.