pycom05g00780

Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0002506
Physical Location & Seq
Reverse (-)
975491 .. 978105
2615 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g00780.7

Sequence Viewer

Length: 852 bp
ATGGATCTCACGCCGTTCAAGCGGGACGTTGACGAGCTGATAGATGAATTTACTAAGGCTGAATCAACGAGTTTGGCTGATATGAAGAGGATATGGCTTTCCAAAAAGTTTTCTTACATTTACGAGGCTCGGCCTTCTACCAACTTAGCCTTCTTCATGCAGTCATTGTATGCACATTCGATTGGATACATAGTCGACACAGCTTCTTTATCACACAGAGTGGGTGGACTCTATTGCCTTTTCTGTCTCTATGAGACTCAACCATGCAAACCTCCTTTCAAGATTTATATATCTCTTGAAGAGCTGAAGAAACTTCGAATGCTTGTTATTGACGCAAAGGAAAACAATATAAAAGTGGTATCTTCCTTGGTAAGAAAAATGCTAGAAAAGAATACTTTCCTGTTTGGGTTCGTGGATACAAATGAAGAGTCTTTTGCGGAGACAATAAACCAACTGACACAATTACAGAATGCTCGAGTTCAAGTTGCCTACAAGGAGTTATTTGCTAATACTAAGATTGAGGACTTTCTCCACATGGACTTGGGAATGGAAGTTGACCTGAATACACTTAAGAAAATGTCAACAGAGTATGCAGAGGCCAAGAAAATAGCAATTACGGAGGCCAGCAAGGTTGTGGACGTTGGAGATATAAAGCACATTGCAGAAGGTAAGGAACTGGTTGGAGATGTAGCGGAGAAGATGGTTGGGCAATGGGATTCTCAAAGAGAAGTCTTTTATCGACAAACAGGGGTAAACCAGCGACAGCTGCAACTGATGAGTGACGATGACAATGATGACTTTGATAAGGAACTGGAACAGCTGCTATCTGGAGCAGATTATACAAGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNAPc_SNAP43

Protein Analysis

284

Amino Acids

32.48

Weight (kDa)

4.94

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 195
AciI CCGC 3 cut(s) 22, 437, 692
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 326
AdeI CACNNNGTG 1 cut(s) 220
AflII CTTAAG 1 cut(s) 569
AgsI TTSAA 4 cut(s) 19, 280, 299, 482
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 5 cut(s) 37, 203, 304, 766, 820
AluI AGCT 5 cut(s) 37, 203, 304, 766, 820
Alw26I GTCTC 3 cut(s) 248, 251, 434
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 474
AoxI GGCC 3 cut(s) 131, 597, 621
ApeKI GCWGC 2 cut(s) 766, 820
ApoI RAATTY 1 cut(s) 47
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
Asp700I GAANNNNTTC 1 cut(s) 395
AsuII TTCGAA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 474
BbvI GCAGC 2 cut(s) 753, 807
BccI CCATC 1 cut(s) 694
BciVI GTATCC 2 cut(s) 179, 409
BcoDI GTCTC 3 cut(s) 248, 251, 434
BfaI CTAG 1 cut(s) 383
BfrI CTTAAG 1 cut(s) 569
BfuI GTATCC 2 cut(s) 179, 409
BisI GCNGC 2 cut(s) 767, 821
BlsI GCNGC 2 cut(s) 768, 822
BmeT110I CYCGRG 1 cut(s) 474
BpmI CTGGAG 1 cut(s) 849
Bpu14I TTCGAA 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 366
Bse1I ACTGG 2 cut(s) 681, 816
Bse3DI GCAATG 2 cut(s) 657, 716
BseDI CCNNGG 1 cut(s) 366
BseMI GCAATG 2 cut(s) 657, 716
BseNI ACTGG 2 cut(s) 681, 816
BseXI GCAGC 2 cut(s) 753, 807
BshFI GGCC 3 cut(s) 133, 599, 623
BsiHKCI CYCGRG 1 cut(s) 474
BslFI GGGAC 1 cut(s) 38
BsmAI GTCTC 3 cut(s) 248, 251, 434
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 2 cut(s) 324, 475
BsnI GGCC 3 cut(s) 133, 599, 623
BsoBI CYCGRG 1 cut(s) 474
Bsp119I TTCGAA 1 cut(s) 316
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 3 cut(s) 22, 437, 692
BspANI GGCC 3 cut(s) 133, 599, 623
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 294
BspT104I TTCGAA 1 cut(s) 316
BspTI CTTAAG 1 cut(s) 569
BsrDI GCAATG 2 cut(s) 657, 716
BsrI ACTGG 2 cut(s) 681, 816
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 1 cut(s) 4
BssT1I CCWWGG 1 cut(s) 366
Bst6I CTCTTC 3 cut(s) 80, 294, 420
BstAFI CTTAAG 1 cut(s) 569
BstBI TTCGAA 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 3 cut(s) 54, 145, 513
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 3 cut(s) 248, 251, 434
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 2 cut(s) 19, 766
BstV1I GCAGC 2 cut(s) 753, 807
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 2 cut(s) 179, 409
BsuRI GGCC 3 cut(s) 133, 599, 623
Cac8I GCNNGC 1 cut(s) 625
CseI GACGC 1 cut(s) 341
CviAII CATG 3 cut(s) 157, 264, 535
DdeI CTNAG 3 cut(s) 54, 145, 513
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraIII CACNNNGTG 1 cut(s) 220
Eam1104I CTCTTC 3 cut(s) 80, 294, 420
EarI CTCTTC 3 cut(s) 80, 294, 420
Eco130I CCWWGG 1 cut(s) 366
Eco57I CTGAAG 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 474
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 3 cut(s) 160, 267, 538
FaqI GGGAC 1 cut(s) 38
FatI CATG 3 cut(s) 156, 263, 534
FauI CCCGC 1 cut(s) 15
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 767, 821
Fsp4HI GCNGC 2 cut(s) 767, 821
FspBI CTAG 1 cut(s) 383
GluI GCNGC 2 cut(s) 767, 821
GsuI CTGGAG 1 cut(s) 849
HaeIII GGCC 3 cut(s) 133, 599, 623
HgaI GACGC 1 cut(s) 341
Hin1II CATG 3 cut(s) 160, 267, 538
HincII GTYRAC 4 cut(s) 31, 196, 556, 582
HindII GTYRAC 4 cut(s) 31, 196, 556, 582
HinfI GANTC 5 cut(s) 62, 228, 256, 428, 716
Hpy166II GTNNAC 7 cut(s) 31, 196, 227, 556, 582, 637, 754
Hpy188III TCNNGA 3 cut(s) 280, 296, 828
Hpy8I GTNNAC 7 cut(s) 31, 196, 227, 556, 582, 637, 754
HpyAV CCTTC 3 cut(s) 144, 160, 659
HpyCH4IV ACGT 2 cut(s) 27, 639
HpyCH4V TGCA 6 cut(s) 160, 173, 267, 593, 662, 769
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 766
HpyF3I CTNAG 3 cut(s) 54, 145, 513
HpySE526I ACGT 2 cut(s) 27, 639
Hsp92II CATG 3 cut(s) 160, 267, 538
Kzo9I GATC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 294
LmnI GCTCC 1 cut(s) 830
LpnPI CCDG 8 cut(s) 413, 572, 637, 662, 732, 770, 797, 813
Lsp1109I GCAGC 2 cut(s) 753, 807
MaeI CTAG 1 cut(s) 383
MaeII ACGT 2 cut(s) 27, 639
MaeIII GTNAC 1 cut(s) 779
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 7 cut(s) 97, 145, 311, 319, 354, 437, 709
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 47, 461, 612
MlyI GAGTC 3 cut(s) 222, 250, 437
MmeI TCCRAC 2 cut(s) 622, 661
MnlI CCTC 6 cut(s) 81, 118, 282, 514, 589, 613
MroXI GAANNNNTTC 1 cut(s) 395
MseI TTAA 1 cut(s) 570
MspA1I CMGCKG 2 cut(s) 766, 820
MspCI CTTAAG 1 cut(s) 569
Mva1269I GAATGC 2 cut(s) 324, 475
MwoI GCNNNNNNNGC 2 cut(s) 19, 766
NdeII GATC 1 cut(s) 4
NlaIII CATG 3 cut(s) 160, 267, 538
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 779
NspV TTCGAA 1 cut(s) 316
PaeR7I CTCGAG 1 cut(s) 474
PciSI GCTCTTC 1 cut(s) 294
PctI GAATGC 2 cut(s) 324, 475
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 2 cut(s) 62, 716
PkrI GCNGC 2 cut(s) 768, 822
PleI GAGTC 3 cut(s) 222, 250, 436
PpsI GAGTC 3 cut(s) 222, 250, 436
PspXI VCTCGAGB 1 cut(s) 474
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 2 cut(s) 766, 820
SalI GTCGAC 1 cut(s) 194
SapI GCTCTTC 1 cut(s) 294
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 2 cut(s) 767, 821
Sau3AI GATC 1 cut(s) 4
SchI GAGTC 3 cut(s) 222, 250, 437
Sfr274I CTCGAG 1 cut(s) 474
SfuI TTCGAA 1 cut(s) 316
SlaI CTCGAG 1 cut(s) 474
SmlI CTYRAG 2 cut(s) 474, 569
SmoI CTYRAG 2 cut(s) 474, 569
Sse9I AATT 3 cut(s) 47, 461, 612
SsiI CCGC 3 cut(s) 22, 437, 692
SspMI CTAG 1 cut(s) 383
StyI CCWWGG 1 cut(s) 366
TaiI ACGT 2 cut(s) 30, 642
TaqI TCGA 5 cut(s) 179, 195, 316, 475, 739
TasI AATT 3 cut(s) 47, 461, 612
TfiI GAWTC 2 cut(s) 62, 716
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TseFI GTSAC 1 cut(s) 779
TseI GCWGC 2 cut(s) 766, 820
Tsp45I GTSAC 1 cut(s) 779
TspDTI ATGAA 4 cut(s) 60, 98, 145, 438
TspGWI ACGGA 1 cut(s) 632
Vha464I CTTAAG 1 cut(s) 569
XapI RAATTY 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XhoI CTCGAG 1 cut(s) 474
XmiI GTMKAC 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.