Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006014.1

Orthogroup ID

OG0002506

Physical Location & Seq

Genomic Coordinates Reverse (-)

4357 .. 5205

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006014.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atggatctcgctccgatgaagcgcgacatcgacgacctgatatcccaattcgccgccgccgattcgactcgcttgaccgatatgaagcaagtctggctctccaacaagttctcctacatctacgacgcgcgtcccagttgcaccaattccctcgccctcttcatgcaatccctctattcccactcaatcggacacctaatcgctcccgattcctccctgtcacgacggctcggcggcctctactgcctctactgtctctacgagacccagcccttgaagccccctttcaaggtctacctatccctcggggagctcaagaagctccggaagctcgcggccgacgccagggtccggggcgtgagcgcggcgagtgccgtggtgaagcggatgctggagaagaatgcgtttctgttcgggtgtgtggagacgaacgagggtttgaaagggaaggtggatgagttgacggagctggagaacgccaggattaaagcggcgtgtaagaagttgtttgatgataccaagattgaggagtttattcacatggatttggggatggaggttgatttgagcaaggtgaagcagatgtgtagggattacgaggagttgaagagggttgcggcggtggagggccgtgatgaagagatgaagagggtttcggaaggtaaggagttggttggggatgcgatggagaagattgccaaggagtgggatgctcagagggaagtgttttatcggcagacgggattgagtcagaaactgaatgaagaagagcagcagcagcagcaagaagaggagggagatgttgacagtttcgacaaggaactcgaacaaatgctctctgaagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNAPc_SNAP43

Protein Analysis

282

Amino Acids

32.18

Weight (kDa)

5.09

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53270 AT3G53270 AT3G53270 AT3G53270 AT3G53270 AT3G53270 AT3G53270 AT3G53270 AT3G53270
fragaria_vesca	FvH4_6g31820
malus_domestica	MD05G1013300.v1.1 MD15G1345500.v1.1
prunus_persica	Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1 Prupe.1G493600_v2.0.a1
pyrus_communis	pycom05g00780
rosa_chinensis	RchiOBHm_Chr2g0138971
rosa_laevigata	RLG00000019772 RLG00000019777 RLG00000019782 RLG00000024840 RLG00000024842
rosa_multiflora	Rmu_co8208064.1_g000001 Rmu_sc0006014.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105820
rosa_rugosa	Rorug02G0353700
rosa_samantha	Rh2AG403600 Rh2AG403800 Rh2AG404000 Rh2BG414000 Rh2CG389700 Rh2CG389900 Rh2CG390100 Rh2DG423800
rosa_wichuraiana	Rw2G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	705
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	5 cut(s)	24, 128, 130, 335, 365
AccIII	TCCGGA	1 cut(s)	324
AciI	CCGC	9 cut(s)	54, 57, 234, 335, 365, 385, 491, 617, 620
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	342
AfiI	CCNNNNNNNGG	4 cut(s)	289, 345, 351, 705
AgsI	TTSAA	4 cut(s)	277, 289, 442, 607
AjnI	CCWGG	2 cut(s)	344, 479
AluBI	AGCT	4 cut(s)	313, 322, 331, 469
AluI	AGCT	4 cut(s)	313, 322, 331, 469
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	3 cut(s)	257, 260, 419
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	757
Ama87I	CYCGRG	1 cut(s)	305
Aor13HI	TCCGGA	1 cut(s)	324
AoxI	GGCC	3 cut(s)	235, 336, 628
ApeKI	GCWGC	4 cut(s)	772, 775, 778, 781
AspLEI	GCGC	3 cut(s)	24, 130, 365
AspS9I	GGNCC	2 cut(s)	349, 628
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	391, 586
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	4 cut(s)	784, 787, 790, 793
BccI	CCATC	2 cut(s)	547, 679
BceAI	ACGGC	3 cut(s)	242, 359, 615
BciT130I	CCWGG	2 cut(s)	346, 481
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	3 cut(s)	257, 260, 419
Bme1390I	CCNGG	3 cut(s)	346, 353, 481
Bme18I	GGWCC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	349, 628
BmiI	GGNNCC	1 cut(s)	350
BmrFI	CCNGG	3 cut(s)	346, 353, 481
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	3 cut(s)	378, 670, 700
BmuI	ACTGGG	1 cut(s)	129
BoxI	GACNNNNGTC	1 cut(s)	129
BpmI	CTGGAG	2 cut(s)	413, 491
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	5 cut(s)	304, 345, 352, 375, 699
BsaWI	WCCGGW	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 345, 351, 705
Bse1I	ACTGG	1 cut(s)	135
BseAI	TCCGGA	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	346, 481
BseDI	CCNNGG	5 cut(s)	304, 345, 352, 375, 699
BseGI	GGATG	5 cut(s)	393, 460, 558, 685, 715
BseLI	CCNNNNNNNGG	4 cut(s)	289, 345, 351, 705
BseMII	CTCAG	1 cut(s)	728
BseNI	ACTGG	1 cut(s)	135
BseRI	GAGGAG	3 cut(s)	542, 614, 806
BseX3I	CGGCCG	1 cut(s)	336
BseXI	GCAGC	4 cut(s)	784, 787, 790, 793
BseYI	CCCAGC	1 cut(s)	267
Bsh1236I	CGCG	5 cut(s)	24, 128, 130, 335, 365
Bsh1285I	CGRYCG	1 cut(s)	339
BshFI	GGCC	3 cut(s)	237, 338, 630
BsiEI	CGRYCG	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	2 cut(s)	325, 352
BslFI	GGGAC	1 cut(s)	117
BslI	CCNNNNNNNGG	4 cut(s)	289, 345, 351, 705
BsmAI	GTCTC	3 cut(s)	257, 260, 419
BsmBI	CGTCTC	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	3 cut(s)	237, 338, 630
Bso31I	GGTCTC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp13I	TCCGGA	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	9 cut(s)	54, 57, 234, 335, 365, 385, 491, 617, 620
BspANI	GGCC	3 cut(s)	237, 338, 630
BspCNI	CTCAG	1 cut(s)	727
BspEI	TCCGGA	1 cut(s)	324
BspFNI	CGCG	5 cut(s)	24, 128, 130, 335, 365
BspLI	GGNNCC	1 cut(s)	350
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	762
BspTNI	GGTCTC	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	5 cut(s)	304, 345, 352, 375, 699
BssMI	GATC	1 cut(s)	4
BssNI	GRCGYC	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	699
Bst2UI	CCWGG	2 cut(s)	346, 481
Bst4CI	ACNGT	2 cut(s)	254, 809
Bst6I	CTCTTC	6 cut(s)	164, 602, 633, 641, 762, 783
BstACI	GRCGYC	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	714
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	5 cut(s)	393, 460, 558, 685, 715
BstFNI	CGCG	5 cut(s)	24, 128, 130, 335, 365
BstHHI	GCGC	3 cut(s)	24, 130, 365
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	3 cut(s)	257, 260, 419
BstMBI	GATC	1 cut(s)	4
BstMCI	CGRYCG	1 cut(s)	339
BstMWI	GCNNNNNNNGC	9 cut(s)	94, 243, 277, 319, 328, 341, 371, 778, 781
BstNI	CCWGG	2 cut(s)	346, 481
BstPAI	GACNNNNGTC	1 cut(s)	129
BstSCI	CCNGG	3 cut(s)	344, 351, 479
BstUI	CGCG	5 cut(s)	24, 128, 130, 335, 365
BstV1I	GCAGC	4 cut(s)	784, 787, 790, 793
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	336
BsuRI	GGCC	3 cut(s)	237, 338, 630
BtgI	CCRYGG	1 cut(s)	375
BtgZI	GCGATG	1 cut(s)	698
BtsCI	GGATG	5 cut(s)	393, 460, 558, 685, 715
Cac8I	GCNNGC	1 cut(s)	333
CaiI	CAGNNNCTG	1 cut(s)	757
CfoI	GCGC	3 cut(s)	24, 130, 365
Cfr13I	GGNCC	2 cut(s)	349, 628
CseI	GACGC	3 cut(s)	119, 134, 350
CviAII	CATG	3 cut(s)	163, 541, 846
DdeI	CTNAG	1 cut(s)	714
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
DrdI	GACNNNNNNGTC	1 cut(s)	347
DseDI	GACNNNNNNGTC	1 cut(s)	347
EaeI	YGGCCR	1 cut(s)	336
EagI	CGGCCG	1 cut(s)	336
Eam1104I	CTCTTC	6 cut(s)	164, 602, 633, 641, 762, 783
EarI	CTCTTC	6 cut(s)	164, 602, 633, 641, 762, 783
Ecl136II	GAGCTC	1 cut(s)	313
EclXI	CGGCCG	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	699
Eco24I	GRGCYC	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	257
Eco32I	GATATC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	349
Eco52I	CGGCCG	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	313
Eco88I	CYCGRG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	344, 479
EcoRV	GATATC	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	699
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	699
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	3 cut(s)	166, 544, 849
FaiI	YATR	4 cut(s)	83, 164, 542, 847
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	3 cut(s)	162, 540, 845
FblI	GTMKAC	1 cut(s)	294
FokI	GGATG	5 cut(s)	400, 467, 565, 692, 722
FriOI	GRGCYC	1 cut(s)	315
GlaI	GCGC	3 cut(s)	23, 129, 364
GsaI	CCCAGC	1 cut(s)	271
GsuI	CTGGAG	2 cut(s)	413, 491
HaeIII	GGCC	3 cut(s)	237, 338, 630
HapII	CCGG	2 cut(s)	325, 352
HgaI	GACGC	3 cut(s)	119, 134, 350
HhaI	GCGC	3 cut(s)	24, 130, 365
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	3 cut(s)	166, 544, 849
Hin6I	GCGC	3 cut(s)	22, 128, 363
HinP1I	GCGC	3 cut(s)	22, 128, 363
HincII	GTYRAC	2 cut(s)	462, 805
HindII	GTYRAC	2 cut(s)	462, 805
HinfI	GANTC	4 cut(s)	62, 67, 209, 748
HpaII	CCGG	2 cut(s)	325, 352
HphI	GGTGA	2 cut(s)	391, 586
Hpy166II	GTNNAC	3 cut(s)	295, 462, 805
Hpy188I	TCNGA	6 cut(s)	15, 191, 658, 717, 753, 841
Hpy188III	TCNNGA	4 cut(s)	206, 222, 316, 325
Hpy8I	GTNNAC	3 cut(s)	295, 462, 805
Hpy99I	CGWCG	4 cut(s)	35, 128, 228, 344
HpyAV	CCTTC	2 cut(s)	442, 653
HpyCH4III	ACNGT	2 cut(s)	254, 809
HpyCH4V	TGCA	2 cut(s)	141, 166
HpyF10VI	GCNNNNNNNGC	9 cut(s)	94, 243, 277, 319, 328, 341, 371, 778, 781
HpyF3I	CTNAG	1 cut(s)	714
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	3 cut(s)	166, 544, 849
HspAI	GCGC	3 cut(s)	22, 128, 363
Kpn2I	TCCGGA	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	4
LguI	GCTCTTC	1 cut(s)	762
LmnI	GCTCC	5 cut(s)	16, 208, 310, 327, 466
Lsp1109I	GCAGC	4 cut(s)	784, 787, 790, 793
LweI	GCATC	3 cut(s)	378, 670, 700
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	9 cut(s)	151, 409, 619, 650, 658, 703, 776, 779, 800
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	2 cut(s)	47, 145
MlyI	GAGTC	2 cut(s)	61, 757
MmeI	TCCRAC	1 cut(s)	126
MroI	TCCGGA	1 cut(s)	324
MseI	TTAA	1 cut(s)	486
MspI	CCGG	2 cut(s)	325, 352
MspR9I	CCNGG	3 cut(s)	346, 353, 481
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	2 cut(s)	346, 481
MvnI	CGCG	5 cut(s)	24, 128, 130, 335, 365
MwoI	GCNNNNNNNGC	9 cut(s)	94, 243, 277, 319, 328, 341, 371, 778, 781
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	166, 544, 849
NlaIV	GGNNCC	1 cut(s)	350
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	762
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	62, 209
PflMI	CCANNNNNTGG	1 cut(s)	705
PleI	GAGTC	2 cut(s)	61, 756
PpsI	GAGTC	2 cut(s)	61, 756
PshAI	GACNNNNGTC	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	2 cut(s)	344, 479
PspFI	CCCAGC	1 cut(s)	267
PspGI	CCWGG	2 cut(s)	344, 479
PspN4I	GGNNCC	1 cut(s)	350
PspPI	GGNCC	2 cut(s)	349, 628
PstNI	CAGNNNCTG	1 cut(s)	757
PsuI	RGATCY	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	315
SapI	GCTCTTC	1 cut(s)	762
SaqAI	TTAA	1 cut(s)	486
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	2 cut(s)	349, 628
SchI	GAGTC	2 cut(s)	61, 757
ScrFI	CCNGG	3 cut(s)	346, 353, 481
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	3 cut(s)	378, 670, 700
SinI	GGWCC	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	47, 145
SsiI	CCGC	9 cut(s)	54, 57, 234, 335, 365, 385, 491, 617, 620
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	3 cut(s)	344, 351, 479
StyI	CCWWGG	1 cut(s)	699
TaaI	ACNGT	2 cut(s)	254, 809
TaqI	TCGA	4 cut(s)	30, 65, 813, 825
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	2 cut(s)	47, 145
TauI	GCSGC	7 cut(s)	56, 59, 237, 338, 368, 494, 620
TfiI	GAWTC	2 cut(s)	62, 209
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	4 cut(s)	772, 775, 778, 781
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	6 cut(s)	32, 98, 151, 651, 659, 777
TspGWI	ACGGA	1 cut(s)	479
Van91I	CCANNNNNTGG	1 cut(s)	705
VpaK11BI	GGWCC	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.