Rroxscaffold_2G00105820

Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002506
Physical Location & Seq
Forward (+)
29313858 .. 29318434
4577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00105820.1

Sequence Viewer

Length: 876 bp
ATGGATCTCGCTCCGATGAAGCGCGACATCGACGACCTGATATCCCAATTCGCCGCCGCGGATTCGACTCGCTTCACCGATATGAAGCAAGTCTGGCTCTCCAACAAGTTCTCCTACATCTACGACGCGCGTCCCACTTGCACCAATTCCCTCGCCCTCTTCATGCAATCCCTCTATTCCCACTCAATCGGACACCTAATCGCTCCCGATTCCTCCCTATCGCGACGCCTCGGCGGCCTCTACTGCCTCTACTGTCTCTACGAGACCCAGCCCTTCAAGCCCCCTTTCAAGGTCTACCTATCCCTCGAGGAGCTGAAGAAGCTCCGGAAGCTCGTGGCCGACGCCAAGGTCCGGGGCGTGAGCGCGGTGAGTGCCGTGGTGAAGCGGATGCTGGAGAAGAATGCGTTTCTGTTCGGGTGTGTGGAGACGAACGAGGGTTTGAAAGGGAAGGTGGATGAGTTGACGGAGCTGGAGAACGCGAGGATTAAAGCGGCGTGTAAGAAGTTGTTTGATGATACCAAGATTGAGGAGTTTATTCACATGGATTTGGGGATGGAGGTTGATTTGAGGAAGGTGAAGCAGATGTGTAGGGATTACGAGGAGTTGAAGAGGGTTGCGGCGGTGGAGGGCGGTGATGAAGAGATGAAGGGGGTTTCGGAAGGTAAGGAGTTGGTTGGGGATGCAATGGAGAAGATTGCCAAGGAGTGGGATGCTCAGATGGAAGTGTTTTATCGACAGACGGGATTGAGTCAGAAACTGAATGAAGAAGAGCAGCAGCAAGAAGAGGAGGAGATAATGACAGTTTCGACAAGGAACTCGAACAAATGCTCTCTGAAGCATGATGGTGACTCTACTGTAGGTTTACCCAACGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNAPc_SNAP43

Protein Analysis

291

Amino Acids

33.02

Weight (kDa)

5.3

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC1 PF09808 6 - 203 1.2e-52 Small nuclear RNA activating complex (SNAPc), subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AbsI CCTCGAGG 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 705
AccI GTMKAC 1 cut(s) 294
AccII CGCG 7 cut(s) 24, 59, 128, 130, 223, 365, 479
AccIII TCCGGA 1 cut(s) 324
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 336
AcuI CTGAAG 2 cut(s) 335, 854
AcyI GRCGYC 2 cut(s) 226, 342
AfiI CCNNNNNNNGG 3 cut(s) 289, 351, 705
AgsI TTSAA 4 cut(s) 277, 289, 442, 607
AluBI AGCT 4 cut(s) 313, 322, 331, 469
AluI AGCT 4 cut(s) 313, 322, 331, 469
Alw26I GTCTC 3 cut(s) 257, 260, 419
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 757
Ama87I CYCGRG 1 cut(s) 305
Aor13HI TCCGGA 1 cut(s) 324
AoxI GGCC 2 cut(s) 235, 336
ApeKI GCWGC 2 cut(s) 772, 775
AspLEI GCGC 3 cut(s) 24, 130, 365
AspS9I GGNCC 1 cut(s) 349
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 6 cut(s) 67, 379, 391, 586, 644, 857
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 1 cut(s) 349
BauI CACGAG 1 cut(s) 332
BbvI GCAGC 2 cut(s) 784, 787
BccI CCATC 3 cut(s) 547, 712, 836
BceAI ACGGC 1 cut(s) 359
BcnI CCSGG 1 cut(s) 353
BcoDI GTCTC 3 cut(s) 257, 260, 419
BfmI CTRYAG 1 cut(s) 855
BglI GCCNNNNNGGC 1 cut(s) 234
BisI GCNGC 7 cut(s) 54, 57, 235, 492, 618, 773, 776
BlsI GCNGC 7 cut(s) 55, 58, 236, 493, 619, 774, 777
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 1 cut(s) 349
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 3 cut(s) 378, 670, 700
BoxI GACNNNNGTC 1 cut(s) 129
BpmI CTGGAG 2 cut(s) 413, 491
BpuMI CCSGG 1 cut(s) 353
BsaHI GRCGYC 2 cut(s) 226, 342
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 6 cut(s) 57, 229, 345, 352, 375, 699
BsaWI WCCGGW 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 351, 705
Bse3DI GCAATG 1 cut(s) 690
BseAI TCCGGA 1 cut(s) 324
BseDI CCNNGG 6 cut(s) 57, 229, 345, 352, 375, 699
BseGI GGATG 5 cut(s) 393, 460, 558, 685, 715
BseLI CCNNNNNNNGG 3 cut(s) 289, 351, 705
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 1 cut(s) 728
BseRI GAGGAG 5 cut(s) 323, 542, 614, 800, 803
BseXI GCAGC 2 cut(s) 784, 787
BseYI CCCAGC 1 cut(s) 267
Bsh1236I CGCG 7 cut(s) 24, 59, 128, 130, 223, 365, 479
BshFI GGCC 2 cut(s) 237, 338
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 2 cut(s) 325, 352
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 3 cut(s) 289, 351, 705
BsmAI GTCTC 3 cut(s) 257, 260, 419
BsmBI CGTCTC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 117
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 2 cut(s) 237, 338
Bso31I GGTCTC 1 cut(s) 257
BsoBI CYCGRG 1 cut(s) 305
Bsp13I TCCGGA 1 cut(s) 324
Bsp143I GATC 1 cut(s) 4
Bsp68I TCGCGA 1 cut(s) 223
BspANI GGCC 2 cut(s) 237, 338
BspCNI CTCAG 1 cut(s) 727
BspEI TCCGGA 1 cut(s) 324
BspFNI CGCG 7 cut(s) 24, 59, 128, 130, 223, 365, 479
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 762
BspTNI GGTCTC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 690
BssECI CCNNGG 6 cut(s) 57, 229, 345, 352, 375, 699
BssMI GATC 1 cut(s) 4
BssNI GRCGYC 2 cut(s) 226, 342
BssSI CACGAG 1 cut(s) 332
BssT1I CCWWGG 2 cut(s) 345, 699
Bst2BI CACGAG 1 cut(s) 332
Bst4CI ACNGT 3 cut(s) 254, 802, 856
Bst6I CTCTTC 5 cut(s) 164, 602, 633, 762, 777
BstACI GRCGYC 2 cut(s) 226, 342
BstDEI CTNAG 1 cut(s) 714
BstDSI CCRYGG 2 cut(s) 57, 375
BstF5I GGATG 5 cut(s) 393, 460, 558, 685, 715
BstFNI CGCG 7 cut(s) 24, 59, 128, 130, 223, 365, 479
BstHHI GCGC 3 cut(s) 24, 130, 365
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 3 cut(s) 257, 260, 419
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 7 cut(s) 94, 234, 243, 277, 319, 328, 371
BstPAI GACNNNNGTC 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 351
BstSFI CTRYAG 1 cut(s) 855
BstUI CGCG 7 cut(s) 24, 59, 128, 130, 223, 365, 479
BstV1I GCAGC 2 cut(s) 784, 787
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 237, 338
BtgI CCRYGG 2 cut(s) 57, 375
BtsCI GGATG 5 cut(s) 393, 460, 558, 685, 715
BtuMI TCGCGA 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 757
CfoI GCGC 3 cut(s) 24, 130, 365
Cfr13I GGNCC 1 cut(s) 349
Cfr42I CCGCGG 1 cut(s) 60
CseI GACGC 4 cut(s) 119, 134, 234, 350
CviAII CATG 3 cut(s) 163, 541, 839
CviJI RGCY 9 cut(s) 97, 237, 271, 280, 313, 322, 331, 338, 469
CviKI_1 RGCY 9 cut(s) 97, 237, 271, 280, 313, 322, 331, 338, 469
DdeI CTNAG 1 cut(s) 714
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 5 cut(s) 164, 602, 633, 762, 777
EarI CTCTTC 5 cut(s) 164, 602, 633, 762, 777
Eco130I CCWWGG 2 cut(s) 345, 699
Eco31I GGTCTC 1 cut(s) 257
Eco32I GATATC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 349
Eco57I CTGAAG 2 cut(s) 335, 854
Eco88I CYCGRG 1 cut(s) 305
EcoRV GATATC 1 cut(s) 42
EcoT14I CCWWGG 2 cut(s) 345, 699
ErhI CCWWGG 2 cut(s) 345, 699
Esp3I CGTCTC 1 cut(s) 419
FaeI CATG 3 cut(s) 166, 544, 842
FaiI YATR 5 cut(s) 83, 164, 542, 840, 874
FaqI GGGAC 1 cut(s) 117
FatI CATG 3 cut(s) 162, 540, 838
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 7 cut(s) 54, 57, 235, 492, 618, 773, 776
FokI GGATG 5 cut(s) 400, 467, 565, 692, 722
Fsp4HI GCNGC 7 cut(s) 54, 57, 235, 492, 618, 773, 776
GlaI GCGC 3 cut(s) 23, 129, 364
GluI GCNGC 7 cut(s) 54, 57, 235, 492, 618, 773, 776
GsaI CCCAGC 1 cut(s) 271
GsuI CTGGAG 2 cut(s) 413, 491
HaeIII GGCC 2 cut(s) 237, 338
HapII CCGG 2 cut(s) 325, 352
HgaI GACGC 4 cut(s) 119, 134, 234, 350
HhaI GCGC 3 cut(s) 24, 130, 365
Hin1I GRCGYC 2 cut(s) 226, 342
Hin1II CATG 3 cut(s) 166, 544, 842
Hin6I GCGC 3 cut(s) 22, 128, 363
HinP1I GCGC 3 cut(s) 22, 128, 363
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HinfI GANTC 5 cut(s) 62, 67, 209, 748, 848
HpaII CCGG 2 cut(s) 325, 352
HphI GGTGA 6 cut(s) 67, 379, 391, 586, 644, 857
Hpy166II GTNNAC 3 cut(s) 295, 462, 863
Hpy188I TCNGA 6 cut(s) 15, 191, 658, 717, 753, 834
Hpy188III TCNNGA 3 cut(s) 206, 222, 325
Hpy8I GTNNAC 3 cut(s) 295, 462, 863
Hpy99I CGWCG 4 cut(s) 35, 128, 228, 344
HpyAV CCTTC 5 cut(s) 283, 442, 565, 640, 653
HpyCH4III ACNGT 3 cut(s) 254, 802, 856
HpyCH4V TGCA 3 cut(s) 141, 166, 683
HpyF10VI GCNNNNNNNGC 7 cut(s) 94, 234, 243, 277, 319, 328, 371
HpyF3I CTNAG 1 cut(s) 714
Hsp92I GRCGYC 2 cut(s) 226, 342
Hsp92II CATG 3 cut(s) 166, 544, 842
HspAI GCGC 3 cut(s) 22, 128, 363
Kpn2I TCCGGA 1 cut(s) 324
KspI CCGCGG 1 cut(s) 60
Kzo9I GATC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 762
LmnI GCTCC 5 cut(s) 16, 208, 310, 327, 466
LpnPI CCDG 7 cut(s) 50, 79, 281, 338, 365, 377, 455
Lsp1109I GCAGC 2 cut(s) 784, 787
LweI GCATC 3 cut(s) 378, 670, 700
MaeIII GTNAC 1 cut(s) 845
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 9 cut(s) 151, 328, 409, 619, 650, 703, 776, 779, 794
MflI RGATCY 1 cut(s) 4
MluCI AATT 2 cut(s) 47, 145
MlyI GAGTC 3 cut(s) 61, 757, 842
MmeI TCCRAC 1 cut(s) 126
MroI TCCGGA 1 cut(s) 324
MseI TTAA 1 cut(s) 486
MslI CAYNNNNRTG 2 cut(s) 80, 843
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 2 cut(s) 325, 352
MspR9I CCNGG 1 cut(s) 353
Mva1269I GAATGC 1 cut(s) 406
MvnI CGCG 7 cut(s) 24, 59, 128, 130, 223, 365, 479
MwoI GCNNNNNNNGC 7 cut(s) 94, 234, 243, 277, 319, 328, 371
NciI CCSGG 1 cut(s) 353
NdeII GATC 1 cut(s) 4
NlaIII CATG 3 cut(s) 166, 544, 842
NmeAIII GCCGAG 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 845
NruI TCGCGA 1 cut(s) 223
PaeR7I CTCGAG 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 762
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 2 cut(s) 62, 209
PflMI CCANNNNNTGG 1 cut(s) 705
PkrI GCNGC 7 cut(s) 55, 58, 236, 493, 619, 774, 777
PleI GAGTC 3 cut(s) 61, 756, 842
PpsI GAGTC 3 cut(s) 61, 756, 842
PshAI GACNNNNGTC 1 cut(s) 129
PspFI CCCAGC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 349
PspXI VCTCGAGB 1 cut(s) 305
PstNI CAGNNNCTG 1 cut(s) 757
PsuI RGATCY 1 cut(s) 4
RruI TCGCGA 1 cut(s) 223
RseI CAYNNNNRTG 2 cut(s) 80, 843
SacII CCGCGG 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 762
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 7 cut(s) 54, 57, 235, 492, 618, 773, 776
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 349
SchI GAGTC 3 cut(s) 61, 757, 842
ScrFI CCNGG 1 cut(s) 353
SfaNI GCATC 3 cut(s) 378, 670, 700
SfcI CTRYAG 1 cut(s) 855
Sfr274I CTCGAG 1 cut(s) 305
Sfr303I CCGCGG 1 cut(s) 60
SgrBI CCGCGG 1 cut(s) 60
SinI GGWCC 1 cut(s) 349
SlaI CTCGAG 1 cut(s) 305
SmiMI CAYNNNNRTG 2 cut(s) 80, 843
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 2 cut(s) 47, 145
StyD4I CCNGG 1 cut(s) 351
StyI CCWWGG 2 cut(s) 345, 699
TaaI ACNGT 3 cut(s) 254, 802, 856
TaqI TCGA 6 cut(s) 30, 65, 306, 733, 806, 818
TasI AATT 2 cut(s) 47, 145
TauI GCSGC 5 cut(s) 56, 59, 237, 494, 620
TfiI GAWTC 2 cut(s) 62, 209
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TseFI GTSAC 1 cut(s) 845
TseI GCWGC 2 cut(s) 772, 775
Tsp45I GTSAC 1 cut(s) 845
TspDTI ATGAA 6 cut(s) 32, 98, 151, 651, 659, 777
TspGWI ACGGA 1 cut(s) 479
Van91I CCANNNNNTGG 1 cut(s) 705
VpaK11BI GGWCC 1 cut(s) 349
XhoI CTCGAG 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.