Rw2G032840

Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002506
Physical Location & Seq
Reverse (-)
53895159 .. 53899540
4382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G032840.1

Sequence Viewer

Length: 834 bp
ATGGATCTCGCTCCGATGAAGCGCGACATCGACGACCTGATATCCCAATTCGCCGCCGCCGATTCGACTCGCTTGACCGATATGAAGCAAGTCTGGCTCTCCAACAAGTTCTCCTACATCTACGACGCGCGTCCCAGTTGCACCAATTCCCTCGCCCTCTTCATGCAATCCCTCTATTCCCACTCAATCGGACACCTAATCGCTCCCGATTCCTCCCTGTCACGAAGGCTCGGCGGCCTCTACTGCCTCTACTGTCTCTACGAGACCCAGCCCTTGAAGCCCCCTTTCAAGGTCTACCTATCCCTCGGGGAGCTCAAGAAGCTCCGGAAGCTCGCGGCCGACGCCAGGGTCCGGGGCGTGAGCGCGGCGGGTGCCGTGGTGAAGCGGATGCTGGAGAAGAATGCGTTTCTGTTCGGGTGTGTGGAGACGAACGAGGGTTTGAAAGGGAAGGTGGATGAGTTGACGGAGCTGGAGAACGCCAGGATTAAAGCGGCGTGCAACAAGTTGTTTGATGATACCAAGATTGAGGAGTTTATTCACATGGATTTGGGGATGGAGGTTGATTTGAGCAAGGTGAAGCAGATGTGTAGGGATTACGAGGAGTTGAAGAGGGTTGCGGCGGTGGAGGGCCGTGATGAAGAGATGAAGAGGGTTTCGGAAGGTAAGGAGTTGGTTGGGGATGCGATGGAGAAGATTGCCAAGGAGTGGGATGCTCAGAGGGAAGTGTTTTATCGGCAGACGGGATTGAGTCAGAAACTGAATGAAGAAGAGCAGCAGCAGCAAGAAGATGACAGTTTCGACAAGGAACTCGAACAAATGCTCTCTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNAPc_SNAP43

Protein Analysis

277

Amino Acids

31.59

Weight (kDa)

5.14

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC1 PF09808 6 - 203 7.5e-50 Small nuclear RNA activating complex (SNAPc), subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 371
AccB7I CCANNNNNTGG 1 cut(s) 705
AccI GTMKAC 1 cut(s) 294
AccII CGCG 5 cut(s) 24, 128, 130, 335, 365
AccIII TCCGGA 1 cut(s) 324
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 342
AfiI CCNNNNNNNGG 4 cut(s) 289, 345, 351, 705
AgsI TTSAA 4 cut(s) 277, 289, 442, 607
AjnI CCWGG 2 cut(s) 344, 479
AluBI AGCT 5 cut(s) 313, 322, 331, 469, 830
AluI AGCT 5 cut(s) 313, 322, 331, 469, 830
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 3 cut(s) 257, 260, 419
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 757
Ama87I CYCGRG 1 cut(s) 305
Aor13HI TCCGGA 1 cut(s) 324
AoxI GGCC 3 cut(s) 235, 336, 628
ApeKI GCWGC 3 cut(s) 772, 775, 778
AspLEI GCGC 3 cut(s) 24, 130, 365
AspS9I GGNCC 2 cut(s) 349, 628
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 2 cut(s) 391, 586
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 3 cut(s) 784, 787, 790
BccI CCATC 2 cut(s) 547, 679
BceAI ACGGC 2 cut(s) 359, 615
BciT130I CCWGG 2 cut(s) 346, 481
BcnI CCSGG 1 cut(s) 353
BcoDI GTCTC 3 cut(s) 257, 260, 419
Bme1390I CCNGG 3 cut(s) 346, 353, 481
Bme18I GGWCC 1 cut(s) 349
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 2 cut(s) 349, 628
BmiI GGNNCC 2 cut(s) 350, 373
BmrFI CCNGG 3 cut(s) 346, 353, 481
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 3 cut(s) 378, 670, 700
BmuI ACTGGG 1 cut(s) 129
BoxI GACNNNNGTC 1 cut(s) 129
BpmI CTGGAG 2 cut(s) 413, 491
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 353
BsaHI GRCGYC 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 5 cut(s) 304, 345, 352, 375, 699
BsaWI WCCGGW 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 4 cut(s) 289, 345, 351, 705
Bse1I ACTGG 1 cut(s) 135
BseAI TCCGGA 1 cut(s) 324
BseBI CCWGG 2 cut(s) 346, 481
BseDI CCNNGG 5 cut(s) 304, 345, 352, 375, 699
BseGI GGATG 5 cut(s) 393, 460, 558, 685, 715
BseLI CCNNNNNNNGG 4 cut(s) 289, 345, 351, 705
BseMII CTCAG 1 cut(s) 728
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 2 cut(s) 542, 614
BseX3I CGGCCG 1 cut(s) 336
BseXI GCAGC 3 cut(s) 784, 787, 790
BseYI CCCAGC 1 cut(s) 267
Bsh1236I CGCG 5 cut(s) 24, 128, 130, 335, 365
Bsh1285I CGRYCG 1 cut(s) 339
BshFI GGCC 3 cut(s) 237, 338, 630
BshNI GGYRCC 1 cut(s) 371
BsiEI CGRYCG 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 2 cut(s) 325, 352
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 4 cut(s) 289, 345, 351, 705
BsmAI GTCTC 3 cut(s) 257, 260, 419
BsmBI CGTCTC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 117
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 3 cut(s) 237, 338, 630
Bso31I GGTCTC 1 cut(s) 257
BsoBI CYCGRG 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 315
Bsp13I TCCGGA 1 cut(s) 324
Bsp143I GATC 1 cut(s) 4
BspANI GGCC 3 cut(s) 237, 338, 630
BspCNI CTCAG 1 cut(s) 727
BspEI TCCGGA 1 cut(s) 324
BspFNI CGCG 5 cut(s) 24, 128, 130, 335, 365
BspLI GGNNCC 2 cut(s) 350, 373
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 762
BspT107I GGYRCC 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 5 cut(s) 304, 345, 352, 375, 699
BssMI GATC 1 cut(s) 4
BssNI GRCGYC 1 cut(s) 342
BssT1I CCWWGG 1 cut(s) 699
Bst2UI CCWGG 2 cut(s) 346, 481
Bst4CI ACNGT 2 cut(s) 254, 794
Bst6I CTCTTC 5 cut(s) 164, 602, 633, 641, 762
BstACI GRCGYC 1 cut(s) 342
BstC8I GCNNGC 2 cut(s) 333, 496
BstDEI CTNAG 1 cut(s) 714
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 5 cut(s) 393, 460, 558, 685, 715
BstFNI CGCG 5 cut(s) 24, 128, 130, 335, 365
BstHHI GCGC 3 cut(s) 24, 130, 365
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 3 cut(s) 257, 260, 419
BstMBI GATC 1 cut(s) 4
BstMCI CGRYCG 1 cut(s) 339
BstMWI GCNNNNNNNGC 8 cut(s) 94, 243, 277, 319, 328, 341, 371, 778
BstNI CCWGG 2 cut(s) 346, 481
BstPAI GACNNNNGTC 1 cut(s) 129
BstSCI CCNGG 3 cut(s) 344, 351, 479
BstUI CGCG 5 cut(s) 24, 128, 130, 335, 365
BstV1I GCAGC 3 cut(s) 784, 787, 790
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BstZI CGGCCG 1 cut(s) 336
BsuRI GGCC 3 cut(s) 237, 338, 630
BtgI CCRYGG 1 cut(s) 375
BtgZI GCGATG 1 cut(s) 698
BtsCI GGATG 5 cut(s) 393, 460, 558, 685, 715
Cac8I GCNNGC 2 cut(s) 333, 496
CaiI CAGNNNCTG 1 cut(s) 757
CfoI GCGC 3 cut(s) 24, 130, 365
Cfr13I GGNCC 2 cut(s) 349, 628
CseI GACGC 3 cut(s) 119, 134, 350
CviAII CATG 2 cut(s) 163, 541
DdeI CTNAG 1 cut(s) 714
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
EaeI YGGCCR 1 cut(s) 336
EagI CGGCCG 1 cut(s) 336
Eam1104I CTCTTC 5 cut(s) 164, 602, 633, 641, 762
EarI CTCTTC 5 cut(s) 164, 602, 633, 641, 762
Ecl136II GAGCTC 1 cut(s) 313
EclXI CGGCCG 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 699
Eco24I GRGCYC 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 257
Eco32I GATATC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 349
Eco52I CGGCCG 1 cut(s) 336
Eco53kI GAGCTC 1 cut(s) 313
Eco88I CYCGRG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 344, 479
EcoRV GATATC 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 699
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 699
Esp3I CGTCTC 1 cut(s) 419
FaeI CATG 2 cut(s) 166, 544
FaiI YATR 3 cut(s) 83, 164, 542
FaqI GGGAC 1 cut(s) 117
FatI CATG 2 cut(s) 162, 540
FauI CCCGC 1 cut(s) 361
FblI GTMKAC 1 cut(s) 294
FokI GGATG 5 cut(s) 400, 467, 565, 692, 722
FriOI GRGCYC 1 cut(s) 315
GlaI GCGC 3 cut(s) 23, 129, 364
GsaI CCCAGC 1 cut(s) 271
GsuI CTGGAG 2 cut(s) 413, 491
HaeIII GGCC 3 cut(s) 237, 338, 630
HapII CCGG 2 cut(s) 325, 352
HgaI GACGC 3 cut(s) 119, 134, 350
HhaI GCGC 3 cut(s) 24, 130, 365
Hin1I GRCGYC 1 cut(s) 342
Hin1II CATG 2 cut(s) 166, 544
Hin6I GCGC 3 cut(s) 22, 128, 363
HinP1I GCGC 3 cut(s) 22, 128, 363
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HindIII AAGCTT 1 cut(s) 828
HinfI GANTC 4 cut(s) 62, 67, 209, 748
HpaII CCGG 2 cut(s) 325, 352
HphI GGTGA 2 cut(s) 391, 586
Hpy166II GTNNAC 2 cut(s) 295, 462
Hpy188I TCNGA 6 cut(s) 15, 191, 658, 717, 753, 826
Hpy188III TCNNGA 4 cut(s) 206, 222, 316, 325
Hpy8I GTNNAC 2 cut(s) 295, 462
Hpy99I CGWCG 3 cut(s) 35, 128, 344
HpyAV CCTTC 3 cut(s) 219, 442, 653
HpyCH4III ACNGT 2 cut(s) 254, 794
HpyCH4V TGCA 3 cut(s) 141, 166, 498
HpyF10VI GCNNNNNNNGC 8 cut(s) 94, 243, 277, 319, 328, 341, 371, 778
HpyF3I CTNAG 1 cut(s) 714
Hsp92I GRCGYC 1 cut(s) 342
Hsp92II CATG 2 cut(s) 166, 544
HspAI GCGC 3 cut(s) 22, 128, 363
Kpn2I TCCGGA 1 cut(s) 324
Kzo9I GATC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 762
LmnI GCTCC 5 cut(s) 16, 208, 310, 327, 466
Lsp1109I GCAGC 3 cut(s) 784, 787, 790
LweI GCATC 3 cut(s) 378, 670, 700
MaeIII GTNAC 1 cut(s) 219
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 9 cut(s) 151, 409, 619, 650, 658, 703, 776, 779, 797
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 2 cut(s) 47, 145
MlyI GAGTC 2 cut(s) 61, 757
MmeI TCCRAC 1 cut(s) 126
MroI TCCGGA 1 cut(s) 324
MseI TTAA 1 cut(s) 486
MspI CCGG 2 cut(s) 325, 352
MspR9I CCNGG 3 cut(s) 346, 353, 481
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 2 cut(s) 346, 481
MvnI CGCG 5 cut(s) 24, 128, 130, 335, 365
MwoI GCNNNNNNNGC 8 cut(s) 94, 243, 277, 319, 328, 341, 371, 778
NciI CCSGG 1 cut(s) 353
NdeII GATC 1 cut(s) 4
NlaIII CATG 2 cut(s) 166, 544
NlaIV GGNNCC 2 cut(s) 350, 373
NmeAIII GCCGAG 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 219
PciSI GCTCTTC 1 cut(s) 762
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 2 cut(s) 62, 209
PflMI CCANNNNNTGG 1 cut(s) 705
PleI GAGTC 2 cut(s) 61, 756
PpsI GAGTC 2 cut(s) 61, 756
PshAI GACNNNNGTC 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 344, 479
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 2 cut(s) 344, 479
PspN4I GGNNCC 2 cut(s) 350, 373
PspPI GGNCC 2 cut(s) 349, 628
PstNI CAGNNNCTG 1 cut(s) 757
PsuI RGATCY 1 cut(s) 4
SacI GAGCTC 1 cut(s) 315
SapI GCTCTTC 1 cut(s) 762
SaqAI TTAA 1 cut(s) 486
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 2 cut(s) 349, 628
SchI GAGTC 2 cut(s) 61, 757
ScrFI CCNGG 3 cut(s) 346, 353, 481
SduI GDGCHC 1 cut(s) 315
SfaNI GCATC 3 cut(s) 378, 670, 700
SinI GGWCC 1 cut(s) 349
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 2 cut(s) 47, 145
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 3 cut(s) 344, 351, 479
StyI CCWWGG 1 cut(s) 699
TaaI ACNGT 2 cut(s) 254, 794
TaqI TCGA 4 cut(s) 30, 65, 798, 810
TaqII GACCGA 1 cut(s) 92
TasI AATT 2 cut(s) 47, 145
TauI GCSGC 7 cut(s) 56, 59, 237, 338, 368, 494, 620
TfiI GAWTC 2 cut(s) 62, 209
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TseFI GTSAC 1 cut(s) 219
TseI GCWGC 3 cut(s) 772, 775, 778
Tsp45I GTSAC 1 cut(s) 219
TspDTI ATGAA 6 cut(s) 32, 98, 151, 651, 659, 777
TspGWI ACGGA 1 cut(s) 479
Van91I CCANNNNNTGG 1 cut(s) 705
VpaK11BI GGWCC 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.